Exercises - #5

Merged

nanophyto merged 98 commits into

mainfrom

May 22, 2026

Commits on May 13, 2026

initial container instructions
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235ecb4
initial docker container
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981be36

Commits on May 14, 2026

fix julia setup and hide suggestions
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c7aa767
fancy vs code settings
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ec70db5
docs and initial test script
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ecc8b22
fix UID
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add gitignore
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rename folder
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naming
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f59dc7e

Commits on May 16, 2026

update to ignore model outputs and plots
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add oceanBiome and Oceananigans.jl to deps
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toml for docs
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install julia packages from project.toml
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initial diffusivity example
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more realistic diffusivity
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initial sensitivity example
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7d0d70a

Commits on May 17, 2026

some diagnostic plots
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ab0c3e4

Commits on May 18, 2026

Merge remote-tracking branch 'origin/main' into exercises
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updates from main
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match main
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initial schedule
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wording
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371a3a7
bump agate version
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1a37a86
initial allometric scaling example
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0b2db3a

Commits on May 19, 2026

change schedule
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brain storming
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e5ad016
initial allometric examples
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63a58d9
re-org
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6cf5a21
start adding slides
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add background to title slide
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c06dd35
text and image alignment
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rename
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d07930b
update to ignore quarto outputs
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48fd771
place holders
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some workshop tools
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old page
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WIP
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c7cd9a1
placeholders plus re=org
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8c845fa
set julia version to 1.10
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WIP
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Commits on May 20, 2026

add captions and improve formatting
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initial WIP slides
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background image
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embed quarto slides into docs
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add welcome slide
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update gitignore for quarto
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fix paths
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figure for welcome slide
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4973c5a
add slides to index
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update to ignore .quarto
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wip figures
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wip text
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b5f69fd
papers
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update diags
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ignore generated slides
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re-org figures
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include figs in doc page
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fix links
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update
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wip slides
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outline ideas
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add living vs dead contributions + pretty cbars
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f1ddbed
fix diffusivity warning (?)
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f79b078

Commits on May 21, 2026

include figure save
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only export tracers (fix turbulence bug?)
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8c763e0
.tracers not supported for boxmodel
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maybe?
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strip warnings from docs
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re-org examples
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WIP slide images
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start embedding images
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add cbars
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714c2f3
add column plots for irradiance
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fd7866b
update make for new format
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3fc29e9
fix typo
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re-org
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WIP slides
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improve cbars
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update tools
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tidy helpers
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new diagnostics
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2c361a1
pretty stacked plot
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7ab1c36
one generic time series plotting function
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generic cwm size plot that also works for comparison
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shared legends
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simplify contribution plots
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fc1b6b9
pretty colors
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fix page titles
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0bc565c
add palatability example
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e311dd2
add default initial conditions function
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1ca45ee
update examples
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7b81b27
nicer colors
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add closure term example
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use helper plots
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fudge to avoid size warning
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84d1da5

Commits on May 22, 2026

Apply suggestion from @nanophyto
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tidy slides and examples
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add display() to show figures in vscode
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