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Add files via upload #4

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Merged
TravisBeckwith merged 1 commit into from
Jul 17, 2026
Merged

Add files via upload #4

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2 changes: 1 addition & 1 deletion bids_convert.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -1052,7 +1052,7 @@ fixup_run_numbers() {
else
local run_tag
run_tag="run-$(printf '%02d' "$run_num")"
local new_pattern="${pattern%_${suffix}}_${run_tag}_${suffix}"
local new_pattern="${pattern%_"${suffix}"}_${run_tag}_${suffix}"

for ext in .nii.gz .json .bval .bvec; do
local old="${search_dir}/${pattern}${ext}"
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10 changes: 7 additions & 3 deletions tests/test_bids_convert.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -95,9 +95,13 @@ test_dry_run_creates_no_files() {
# then reports the pipeline as failed even though grep did match.
local out
out="$(bash "$SCRIPT" -i "$input_dir" -o "$output_dir" -n 2>&1)" || true
echo "$out" | grep -q "DRY-RUN" && \
echo " ✅ PASS: dry-run mode activated" && { ((PASS++)) || true; } || \
{ echo " ❌ FAIL: dry-run mode not detected"; ((FAIL++)) || true; }
if echo "$out" | grep -q "DRY-RUN"; then
echo " ✅ PASS: dry-run mode activated"
((PASS++)) || true
else
echo " ❌ FAIL: dry-run mode not detected"
((FAIL++)) || true
fi

teardown_tmp
}
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