Simplify to new esdglider paths defaults

deployment-configs/2018/amlr01-20181216.yml

@@ -1,4 +1,5 @@
 metadata:
+  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
   acknowledgment: This work was supported by funding from NOAA.
   comment: ' '
   contributor_name: Christian Reiss, George Watters, Jennifer Walsh, Anthony Cossio,
@@ -8,8 +9,9 @@ metadata:
   creator_email: nmfs.swfsc.esd-gliders@noaa.gov
   creator_name: Christian Reiss
   creator_url: https://www.fisheries.noaa.gov/about/southwest-fisheries-science-center
-  deployment_id: '1'
   deployment_name: amlr01-20181216
+  disclaimer: This data may be redistributed and used without restriction.  Data provided
+    as is with no expressed or implied assurance of quality assurance or quality control
   format_version: IOOS_Glider_NetCDF_v2.0.nc
   glider_instrument_name: slocum
   glider_model: Teledyne Webb Research Slocum G3 glider
@@ -23,9 +25,10 @@ metadata:
     > Salinity, In Situ Ocean-based platforms > Seaglider, glider, Slocum, trajectory,
     underwater glider, water, wmo
   keywords_vocabulary: GCMD Science Keywords
-  license: This data may be redistributed and used without restriction. Data provided
-    as is with no expressed or implied assurance of quality assurance or quality control.
-  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
+  license: These data were produced by NOAA and are not subject to copyright protection
+    in the United States. NOAA waives any potential copyright and related rights in
+    thse data worldwide through the Creative Commons Zero 1.0 Universal Public Domain
+    Dedication (CC0-1.0, https://creativecommons.org/publicdomain/zero/1.0/).
   metadata_link: https://swfsc.github.io/glider-lab-manual/
   naming_authority: gov.noaa.fisheries
   platform_type: Slocum Glider
@@ -48,6 +51,17 @@ metadata:
   transmission_system: IRIDIUM
   wmo_id: ' '
 glider_devices:
+  instrument_azfp:
+    _FillValue: -999
+    make_model: ASL Environmental Sciences AZFP 3 Frequency
+    long_name: Acoustic Zooplankton Fish Profiler
+    serial_number: '59009'
+    calibration_date: '2017-12-12'
+    factory_calibrated: '2017-12-12'
+    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
+    comment: ''
+    platform: platform
+    type: instrument
   instrument_ctd:
     _FillValue: -999
     long_name: Conductivity, Temperature, Depth (CTD) Sensor
@@ -81,17 +95,6 @@ glider_devices:
     comment: ''
     platform: platform
     type: instrument
-  instrument_azfp:
-    _FillValue: -999
-    make_model: ASL Environmental Sciences AZFP 3 Frequency
-    long_name: Acoustic Zooplankton Fish Profiler
-    serial_number: '59009'
-    calibration_date: '2017-12-12'
-    factory_calibrated: '2017-12-12'
-    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
-    comment: ''
-    platform: platform
-    type: instrument
 netcdf_variables:
   time:
     source: sci_m_present_time
@@ -195,11 +198,13 @@ netcdf_variables:
     long_name: CDOM
     units: ppb
     instrument: instrument_flbbcd
+    valid_min: 0.0
   backscatter_700:
     source: sci_flbbcd_bb_units
     long_name: 700 nm wavelength backscatter
     units: m-1 sr-1
     instrument: instrument_flbbcd
+    valid_min: 0.0
   oxygen_concentration:
     source: sci_oxy4_oxygen
     long_name: oxygen concentration
@@ -216,6 +221,8 @@ netcdf_variables:
     units: percent
     observation_type: measured
     instrument: instrument_oxygen
+    valid_min: 0.0
+    valid_max: 120.0
   water_velocity_eastward:
     source: m_final_water_vx
     long_name: mean eastward water velocity in segment
@@ -332,3 +339,5 @@ profile_variables:
     calendar: gregorian
     units: seconds since 1970-01-01T00:00:00Z
     observation_type: calculated
+  instrument_ctd:
+    comment: placeholder for pyglider profile extraction

deployment-configs/2022/amlr08-20220513.yml

@@ -1,4 +1,5 @@
 metadata:
+  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
   acknowledgment: This work was supported by funding from NOAA.
   comment: ' '
   contributor_name: Christian Reiss, George Watters, Jennifer Walsh, Anthony Cossio,
@@ -8,9 +9,9 @@ metadata:
   creator_email: nmfs.swfsc.esd-gliders@noaa.gov
   creator_name: Christian Reiss
   creator_url: https://www.fisheries.noaa.gov/about/southwest-fisheries-science-center
-  deployment_id: '11'
   deployment_name: amlr08-20220513
-  deployment_min_dt: 2022-05-13 18:57
+  disclaimer: This data may be redistributed and used without restriction.  Data provided
+    as is with no expressed or implied assurance of quality assurance or quality control
   format_version: IOOS_Glider_NetCDF_v2.0.nc
   glider_instrument_name: slocum
   glider_model: Teledyne Webb Research Slocum G3 glider
@@ -24,9 +25,10 @@ metadata:
     > Salinity, In Situ Ocean-based platforms > Seaglider, glider, Slocum, trajectory,
     underwater glider, water, wmo
   keywords_vocabulary: GCMD Science Keywords
-  license: This data may be redistributed and used without restriction. Data provided
-    as is with no expressed or implied assurance of quality assurance or quality control.
-  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
+  license: These data were produced by NOAA and are not subject to copyright protection
+    in the United States. NOAA waives any potential copyright and related rights in
+    thse data worldwide through the Creative Commons Zero 1.0 Universal Public Domain
+    Dedication (CC0-1.0, https://creativecommons.org/publicdomain/zero/1.0/).
   metadata_link: https://swfsc.github.io/glider-lab-manual/
   naming_authority: gov.noaa.fisheries
   os_version: '10.6'
@@ -40,6 +42,7 @@ metadata:
   sea_name: Coastal Waters of California
   source: Observational data from a profiling glider
   standard_name_vocabulary: CF Standard Name Table v72
+  start_date: 20220513T185655
   summary: This was a test deployment by the NOAA SWFSC Ecosystem Science Division
     to test a new WASSOC shadowgraph and Nortek compact echosounder.
   transmission_system: IRIDIUM
@@ -57,6 +60,18 @@ glider_devices:
     description: Pumped, Continuous Profile Unit Version 2, G-1451
     platform: platform
     type: instrument
+  instrument_echosounder:
+    _FillValue: -999
+    make_model: Nortek Signature 100 Compact Echosounder
+    serial_number: '1778'
+    calibration_date: ''
+    factory_calibrated: ''
+    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
+    comment: ''
+    description: Signature 100 compact echosounder for gliders
+    platform: platform
+    type: instrument
+    long_name: Nortek Sig 100 Compact Echosounder
   instrument_flbbcd:
     _FillValue: -999
     long_name: Optical Backscatter, Chlorophyll, and CDOM Fluorescence Sensor
@@ -93,18 +108,6 @@ glider_devices:
     platform: platform
     type: instrument
     long_name: Wassoc Shadowgraph Camera
-  instrument_echosounder:
-    _FillValue: -999
-    make_model: Nortek Signature 100 Compact Echosounder
-    serial_number: '1778'
-    calibration_date: ''
-    factory_calibrated: ''
-    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
-    comment: ''
-    description: Signature 100 compact echosounder for gliders
-    platform: platform
-    type: instrument
-    long_name: Nortek Sig 100 Compact Echosounder
 netcdf_variables:
   time:
     source: sci_m_present_time
@@ -196,13 +199,15 @@ netcdf_variables:
     units: ppb
     observation_type: calculated
     instrument: instrument_flbbcd
+    valid_min: 0.0
   backscatter_700:
     source: sci_flbbcd_bb_units
     long_name: 700 nm wavelength backscatter
     standard_name: volume_backwards_scattering_coefficient_of_radiative_flux_in_sea_water
     units: m-1 sr-1
     observation_type: calculated
     instrument: instrument_flbbcd
+    valid_min: 0.0
   oxygen_concentration:
     source: sci_oxy4_oxygen
     long_name: oxygen concentration
@@ -352,3 +357,5 @@ profile_variables:
     calendar: gregorian
     units: seconds since 1970-01-01T00:00:00Z
     observation_type: calculated
+  instrument_ctd:
+    comment: placeholder for pyglider profile extraction

deployment-configs/2023/amlr03-20231128.yml

@@ -1,4 +1,5 @@
 metadata:
+  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
   acknowledgment: This work was supported by funding from NOAA.
   comment: ' '
   contributor_name: Christian Reiss, George Watters, Jennifer Walsh, Anthony Cossio,
@@ -8,9 +9,9 @@ metadata:
   creator_email: nmfs.swfsc.esd-gliders@noaa.gov
   creator_name: Christian Reiss
   creator_url: https://www.fisheries.noaa.gov/about/southwest-fisheries-science-center
-  deployment_id: '1029'
-  deployment_min_dt: 2023-11-28 20:46
   deployment_name: amlr03-20231128
+  disclaimer: This data may be redistributed and used without restriction.  Data provided
+    as is with no expressed or implied assurance of quality assurance or quality control
   format_version: IOOS_Glider_NetCDF_v2.0.nc
   glider_instrument_name: slocum
   glider_model: Teledyne Webb Research Slocum G3 glider
@@ -24,9 +25,10 @@ metadata:
     > Salinity, In Situ Ocean-based platforms > Seaglider, glider, Slocum, trajectory,
     underwater glider, water, wmo
   keywords_vocabulary: GCMD Science Keywords
-  license: This data may be redistributed and used without restriction. Data provided
-    as is with no expressed or implied assurance of quality assurance or quality control.
-  Metadata_Conventions: Unidata Dataset Discovery v1.0, COARDS, CF-1.8
+  license: These data were produced by NOAA and are not subject to copyright protection
+    in the United States. NOAA waives any potential copyright and related rights in
+    thse data worldwide through the Creative Commons Zero 1.0 Universal Public Domain
+    Dedication (CC0-1.0, https://creativecommons.org/publicdomain/zero/1.0/).
   metadata_link: https://swfsc.github.io/glider-lab-manual/
   naming_authority: gov.noaa.fisheries
   os_version: '8.6'
@@ -40,6 +42,7 @@ metadata:
   sea_name: Southern Ocean
   source: Observational data from a profiling glider
   standard_name_vocabulary: CF Standard Name Table v72
+  start_date: 2023-11-28 20:46
   summary: These data are part of the U.S. Antarctic Marine Living Resources (AMLR)
     Program Operation FREEBYRD. FREEBYRD is a long term program to replace ship-based
     surveys with autonomous vehicles to estimate Antarctic krill biomass in support
@@ -62,6 +65,18 @@ glider_devices:
     description: Pumped, Continuous Profile Unit Version 2, G-1451
     platform: platform
     type: instrument
+  instrument_echosounder:
+    _FillValue: -999
+    make_model: Nortek Signature 100 Compact Echosounder
+    serial_number: '1783'
+    calibration_date: ''
+    factory_calibrated: ''
+    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
+    comment: ''
+    description: Signature 100 compact echosounder for gliders
+    platform: platform
+    type: instrument
+    long_name: Nortek Sig 100 Compact Echosounder
   instrument_flbbcd:
     _FillValue: -999
     long_name: Optical Backscatter, Chlorophyll, and CDOM Fluorescence Sensor
@@ -74,18 +89,6 @@ glider_devices:
     description: flurometer, scattering meter, and cdom 301771
     platform: platform
     type: instrument
-  instrument_oxygen:
-    _FillValue: -999
-    long_name: Oxygen Optode
-    make_model: Aanderaa Oxygen Optode 4831
-    serial_number: '668'
-    calibration_date: '2016-11-20'
-    factory_calibrated: '2016-11-20'
-    calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
-    comment: ''
-    description: ''
-    platform: platform
-    type: instrument
   instrument_glidercam:
     _FillValue: -999
     make_model: Williamson and Associates Glidercam
@@ -99,18 +102,18 @@ glider_devices:
     platform: platform
     type: instrument
     long_name: Wassoc Glidercam
-  instrument_echosounder:
+  instrument_oxygen:
     _FillValue: -999
-    make_model: Nortek Signature 100 Compact Echosounder
-    serial_number: '1783'
-    calibration_date: ''
-    factory_calibrated: ''
+    long_name: Oxygen Optode
+    make_model: Aanderaa Oxygen Optode 4831
+    serial_number: '668'
+    calibration_date: '2016-11-20'
+    factory_calibrated: '2016-11-20'
     calibration_report: https://github.com/SWFSC/glider-lab/tree/main/calibration-docs
     comment: ''
-    description: Signature 100 compact echosounder for gliders
+    description: ''
     platform: platform
     type: instrument
-    long_name: Nortek Sig 100 Compact Echosounder
 netcdf_variables:
   time:
     source: sci_m_present_time
@@ -202,13 +205,15 @@ netcdf_variables:
     units: ppb
     observation_type: calculated
     instrument: instrument_flbbcd
+    valid_min: 0.0
   backscatter_700:
     source: sci_flbbcd_bb_units
     long_name: 700 nm wavelength backscatter
     standard_name: volume_backwards_scattering_coefficient_of_radiative_flux_in_sea_water
     units: m-1 sr-1
     observation_type: calculated
     instrument: instrument_flbbcd
+    valid_min: 0.0
   oxygen_concentration:
     source: sci_oxy4_oxygen
     long_name: oxygen concentration
@@ -225,6 +230,8 @@ netcdf_variables:
     units: percent
     observation_type: measured
     instrument: instrument_oxygen
+    valid_min: 0.0
+    valid_max: 120.0
   heading:
     source: m_heading
     long_name: glider heading angle
@@ -356,3 +363,5 @@ profile_variables:
     calendar: gregorian
     units: seconds since 1970-01-01T00:00:00Z
     observation_type: calculated
+  instrument_ctd:
+    comment: placeholder for pyglider profile extraction