Chen DZ, Roshandel D, Wang Z, Sun L, Paterson AD (2023). Comprehensive whole-genome analyses of the UK Biobank reveal significant sex differences in both genotype missingness and allele frequency on the X chromosome. Human Molecular Genetics.
Code used to compute sdMAF for axiom array genotyped, axiom array imputed, and whole exome sequenced data. Only genotyped data were computed using R, while imputed and WES were computed using R based command-line tool developed by our lab. Details of the tool can be found here.