Issues

• Draft: Base Level NIST Certificate Training

  NVIDIA-Genomics-Research/GenomeWorks#672 · Filter by author mcingram2 opened on Aug 5, 2025

• IRNA.io

  NVIDIA-Genomics-Research/GenomeWorks#671 · Filter by author iAmiRNA opened on Jan 21, 2025

• #include "seqio.h" //TODO add this to 3rdparty

  NVIDIA-Genomics-Research/GenomeWorks#670 · Filter by author CTForGitHub opened on Jun 29, 2024

• GenomeWorks fails to compile with CUDA 12

  NVIDIA-Genomics-Research/GenomeWorks#668 · Filter by author quim0 opened on Aug 30, 2023
  2

• [cudapoa] Kernel error

  NVIDIA-Genomics-Research/GenomeWorks#666 · Filter by author rvaser opened on Feb 26, 2022

• [cudamapper] compared to minimap2

  NVIDIA-Genomics-Research/GenomeWorks#665 · Filter by author wzboy1984 opened on Sep 23, 2021

• cudamapper terminates while doing an all-vs-all mapping

  NVIDIA-Genomics-Research/GenomeWorks#664 · Filter by author alanorth opened on Sep 20, 2021

• Floating Point Exception in Racon

  NVIDIA-Genomics-Research/GenomeWorks#662 · Filter by author schorlton opened on Sep 9, 2021

• cudamapper error using bam output

  NVIDIA-Genomics-Research/GenomeWorks#656 · Filter by author RichardCorbett opened on Jul 5, 2021
  2

• [pygenomeworks] logger chatter.

  bugcudapoa
  NVIDIA-Genomics-Research/GenomeWorks#648 · Filter by author iiSeymour opened on May 8, 2021
  2

  

• format.h is broken and breaks CUDA compile

  bugsdk
  NVIDIA-Genomics-Research/GenomeWorks#637 · Filter by author cement-head opened on Feb 24, 2021 · v0.6.0
  3

  

• [cudaaligner] Disabled caching device-allocator may trigger OOM in cudaaligner

  bugcudaaligner
  NVIDIA-Genomics-Research/GenomeWorks#630 · Filter by author ahehn-nv opened on Feb 16, 2021

• [logging] reduce logging overhead

  enhancementsdk
  NVIDIA-Genomics-Research/GenomeWorks#616 · Filter by author tijyojwad opened on Dec 10, 2020

• [cudapoa] make maximum number of edges per node configurable

  cudapoaenhancement
  NVIDIA-Genomics-Research/GenomeWorks#607 · Filter by author r-mafi opened on Nov 30, 2020

• terminate called after throwing an instance of 'std::runtime_error'

  NVIDIA-Genomics-Research/GenomeWorks#603 · Filter by author bellstwohearted opened on Nov 26, 2020
  1

• How to install GenomeWorks on local machine?

  documentation
  NVIDIA-Genomics-Research/GenomeWorks#593 · Filter by author kountaydwivedi opened on Oct 28, 2020
  10

• [cudapoa] overlapping vertical/diagonal update of score matrix with horizontal update

  cudapoaenhancement
  NVIDIA-Genomics-Research/GenomeWorks#587 · Filter by author r-mafi opened on Oct 15, 2020
  

• [Documentation] Add code blocks instructions for dependencies setup

  documentation
  NVIDIA-Genomics-Research/GenomeWorks#583 · Filter by author ohadmo opened on Oct 6, 2020
  

• [cudaextender] Performance analysis

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#580 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Kernel optimizations

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#579 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Make output compression async

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#578 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Explore configurability of kernel launch parameters.

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#577 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Calculate memory limits based on datastructures used.

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#576 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Check if entropy calculation can be done using a float.

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#575 · Filter by author atadkase opened on Oct 1, 2020

• [cudaextender] Replace cudaextender's hardcoded encoding scheme with cudasequence

  cudaextender
  NVIDIA-Genomics-Research/GenomeWorks#574 · Filter by author atadkase opened on Oct 1, 2020