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Pull requests: NVIDIA-BioNeMo/bionemo-framework

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Pull requests list

Bump jupyter-server from 2.16.0 to 2.18.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1653 opened Jun 17, 2026 by dependabot Bot Loading…
1
Bump starlette from 0.48.0 to 1.3.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1651 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump tornado from 6.5.1 to 6.5.7 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1650 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump python-multipart from 0.0.20 to 0.0.31 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1649 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump bleach from 6.2.0 to 6.4.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1648 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump python-multipart from 0.0.20 to 0.0.31 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1646 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump the all-dependencies group across 1 directory with 206 updates dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1644 opened Jun 15, 2026 by dependabot Bot Loading…
2
Bump the all-dependencies group across 1 directory with 206 updates dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1643 opened Jun 15, 2026 by dependabot Bot Loading…
2
Bump esbuild, @vitejs/plugin-react and vite in /bionemo-recipes/interpretability/sparse_autoencoders/recipes/codonfm/codon_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1641 opened Jun 12, 2026 by dependabot Bot Loading…
2
Bump esbuild, @vitejs/plugin-react and vite in /bionemo-recipes/interpretability/sparse_autoencoders/recipes/esm2/protein_dashboard dependencies Pull requests that update a dependency file javascript Pull requests that update javascript code
#1640 opened Jun 12, 2026 by dependabot Bot Loading…
2
Bump tornado from 6.5.1 to 6.5.6 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1639 opened Jun 12, 2026 by dependabot Bot Loading…
2
Bump pyo3 from 0.18.3 to 0.29.0 in /sub-packages/bionemo-noodles dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#1638 opened Jun 12, 2026 by dependabot Bot Loading…
2
evo2 SAE serve: FastAPI server + CLI (on the engine)
#1637 opened Jun 12, 2026 by polinabinder1 Collaborator Loading…
8
evo2 SAE eval (2/2): probing harness + CLI (on #1630)
#1636 opened Jun 12, 2026 by polinabinder1 Collaborator Loading…
25
evo2 SAE steering analysis: dose-response / selectivity harness + tested metrics
#1635 opened Jun 12, 2026 by polinabinder1 Collaborator Loading…
11
evo2 SAE eval (1/2): label producers — imported by #1636
#1630 opened Jun 11, 2026 by polinabinder1 Collaborator Loading…
22
sae: shared probing primitives (eval metrics + ActivationBuffer)
#1629 opened Jun 11, 2026 by polinabinder1 Collaborator Loading…
5
Bump torch from 2.9.1 to 2.12.0 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1627 opened Jun 11, 2026 by dependabot Bot Loading…
2
sae recipe skill: streaming extract + launch step + gotchas
#1625 opened Jun 10, 2026 by polinabinder1 Collaborator Loading…
7
evo2 SAE recipe: feature-explorer dashboard (viz)
#1623 opened Jun 10, 2026 by polinabinder1 Collaborator Loading…
25
evo2 SAE recipe: live inference engine + steering server + CLI
#1622 opened Jun 10, 2026 by polinabinder1 Collaborator Loading…
25
Bump torch from 2.6.0a0+ecf3bae40a.nv25.01 to 2.8.0 in /bionemo-recipes/models/amplify dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1620 opened Jun 10, 2026 by dependabot Bot Loading…
2
Jwilber/nemotron sae recipe
#1614 opened Jun 6, 2026 by jwilber Collaborator Loading…
@jwilber
2
Bump pyarrow from 23.0.0 to 23.0.1 in /bionemo-recipes/interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1612 opened Jun 5, 2026 by dependabot Bot Loading…
2
Bump pyarrow from 21.0.0 to 23.0.1 in /bionemo-recipes/recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1611 opened Jun 5, 2026 by dependabot Bot Loading…
2
ProTip! Exclude everything labeled bug with -label:bug.