This repository contains the training materials for the NL-BI Advanced Image Analysis course
Organized from 21-24 September 2026 at Erasmus MC in Rotterdam
Course website: https://courses.microscopie.nl/?event_id=527
The materials can be read as Jupyter book at: https://nl-bioimaging.github.io/NL-BioImageAnalysis-course2026/
Check out the preparation documentation for the course here. If you already have git and conda installed.
git clone https://github.com/NL-BioImaging/NL-BioImageAnalysis-course2026.git
No Python/git installed? Check out the preparations page first!
It is possible to build the jupyter book locally. If you have cloned this repository you can use uv to install the dependencies to run Jupyter book. Don't have uv yet? See the uv installation page.
Just run in the repository folder.Create a .venv based onpyproject.toml`
uv sync
uv run jupyter book start
The course content (text, notebooks, images) in this repository is licensed as CC-BY 4.0 by the contributors of this repository unless mentioned otherwise. Code (scripts, code cells) is licensed under the BSD 3-Clause License.