Switch from yamlfix to google-yamlfmt

.github/workflows/pr-checks.yml

@@ -20,14 +20,14 @@ jobs:
           python-version: '3.13'
       - name: Install deps
         run: |
-          pip install yamllint yamlfix
+          pip install yamllint
       - name: Add yamllint annotator
         uses: pr-annotators/yamllint-pr-annotator@v1.0.0
       - name: Run yamllint
         run: |-
           yamllint -f parsable TranslatorReasonerAPI.yaml
   format_check:
-    name: Check Yamlfix
+    name: Check Yamlfmt
     runs-on: ubuntu-latest
     steps:
       - name: Checkout the repository
@@ -41,10 +41,10 @@ jobs:
           python-version: '3.13'
       - name: Install deps
         run: |
-          pip install yamllint yamlfix
-      - name: Run yamlfix
+          pip install google-yamlfmt
+      - name: Run yamlfmt
         run: |-
-          yamlfix TranslatorReasonerAPI.yaml
+          yamlfmt TranslatorReasonerAPI.yaml
       - name: Verify no format changes
         uses: tj-actions/verify-changed-files@v20.0.4
         id: verify-changed-files

.yamlfmt.yaml

@@ -0,0 +1,6 @@
+---
+formatter:
+  type: basic
+  include_document_start: true
+  trim_trailing_whitespace: true # Prevents weird multiline block squashing
+  scan_folded_as_literal: true # Prevents folded style (>-) multiline blocks from being squashed

.yamllint.yml

@@ -9,3 +9,5 @@ rules:
   quoted-strings:
     quote-type: single
     required: only-when-needed
+    extra-allowed:
+      - "^.*:.*$"

TranslatorReasonerAPI.yaml

@@ -853,7 +853,8 @@ components:
         - nodes
     QNode:
       type: object
-      description: A node in the QueryGraph used to represent an entity in a
+      description: >-
+        A node in the QueryGraph used to represent an entity in a
         query. If no CURIEs are not specified, any nodes matching the category
         of the QNode will be returned in the Results.
       properties:
@@ -863,7 +864,7 @@ components:
             $ref: '#/components/schemas/CURIE'
           minItems: 1
           examples:
-            - [OMIM:603903]
+            - ['OMIM:603903']
           description: >-
             A list of one or more CURIE identifiers for this node.
             The 'ids' property will hold a list of CURIEs only in the case of
@@ -1747,7 +1748,7 @@ components:
             retrieved from both the automat-mychem-info and molepro KPs,
             which both provided it with records of this single fact.
           examples:
-            - [infores:automat-mychem-info, infores:molepro]
+            - ['infores:automat-mychem-info', 'infores:molepro']
         source_record_urls:
           type: array
           minItems: 1