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BEELINE v1.2

Status: Open.

#137 In Murali-group/Beeline;

· alexmorinvt opened on Mar 10, 2026

Typo in Zenodo config files: SCINGE vs SINGE causes KeyError in BLRunner

Status: Open.

#134 In Murali-group/Beeline;

· Kimi-chuheng opened on Feb 9, 2026

BEELINE v2.0

Status: Open.

#133 In Murali-group/Beeline;

· alexmorinvt opened on Nov 24, 2025

Reproducing figure 5

Status: Open.

#131 In Murali-group/Beeline;

· anbjork opened on Feb 14, 2025

how to get refNetwork.csv of scRNA-seq data with type

Status: Open.

#129 In Murali-group/Beeline;

· xuerouli opened on Dec 1, 2024

Python & R versions specified in setupAnacondaVENV.sh are not available

Status: Open.

#128 In Murali-group/Beeline;

· nekonekko opened on Sep 5, 2024

Faster way of performing AUC Evaluations on larger datasets.

Status: Open.

#126 In Murali-group/Beeline;

· FaizalJnu opened on Aug 25, 2024

Automatic generation of reference networks

Status: Open.

#125 In Murali-group/Beeline;

· yiqisu opened on Aug 10, 2024

Reference networks

Status: Open.

#124 In Murali-group/Beeline;

· yiqisu opened on Aug 10, 2024

Data download

Status: Open.

#121 In Murali-group/Beeline;

· yiqisu opened on Aug 9, 2024

Preprocessing for scRNA-seq and scATAC-seq data

Status: Open.

#120 In Murali-group/Beeline;

· yiqisu opened on Aug 9, 2024

Check the consistency of TFEdges and selfEdges

Status: Open.

#119 In Murali-group/Beeline;

· yiqisu opened on Aug 9, 2024