30 ecoli review performance and validation - #31

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30-ecoli-review-performance-and-validation

Feb 3, 2026

Commits on Jan 30, 2026

Created notebook to report performance
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Validation set for loss fine-tuning
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Commits on Feb 2, 2026

Performance recording mock example.
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First results on performance for ABaCo.
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Plot performance of first run.
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Created notebook for IBD data
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IBD dataset at genus level.
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Reconstructed dataset with ABaCo.
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Per-taxon multi-run variability stats on IBD dataset.
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Stable/unstable taxons reported.
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Performance metrics over several iterations.
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Plotting of performance on different sample x taxa
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Commits on Feb 3, 2026

Tidy up document.
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Added full description of ABaCo computational cost estimation.
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