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Rename save_pdf→save_file, Europe PMC PDF + anydoc Markdown - #4

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cursor/pnas-pdf-download-attempts-c740
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Rename save_pdf→save_file, Europe PMC PDF + anydoc Markdown#4
MoonDavid wants to merge 7 commits into
mainfrom
cursor/pnas-pdf-download-attempts-c740

Fix CI: allow Europe PMC PDF for Science DOI; soft-fail Codecov

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