Project for PHY426 Course! Web-Based Biochemical kinetics editor.
Backend Simulation Engine for BioBuilder.
This is the repo for the BACKEND for the BioBuilder App (built for PHY426). The frontend is accessible HERE.
- run
pip install -r requirements.txt - run
fastapi dev - Go on a web browser and go to the website
localhost:8000/api/health
You can view docs at: localhost:8000/docs
curl -d "{ 'Species': [], 'Reactions': [], 'Simulation': {'t_end': 300, 'dt': 1, 'method': 'Euler'}}" -X POST localhost:8000/api/simulate/v02
curl -X GET localhost:8000/api/health
curl -X 'POST' 'localhost:8000/api/simulate/v02' -H 'accept: application/json' -H 'Content-Type: application/json' -d '{ "Species": [{"id": "string", "initial": 0 }], "Reactions": [{"id": "string", "Reactants": ["string"], "Products": ["string"], "rate_law": "string", "Parameters": { "additionalProp1": 0, "additionalProp2": 0, "additionalProp3": 0 } }], "Simulation": {"t_end": 0, "dt": 0, "method": "string"}}'
From uniprot https://www.uniprot.org/uniprotkb/P00724/entry Go to Brenda Database https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.1.26&UniProtAcc=P00724&OrganismID=984 (Look for Km values) Or SabioRK Database
Look at enzyme in diff conditions, extrapolate some relation between them?