Predict Causal Genes at GWAS Loci using Machine Learning algorithm
This directory stores codes to implement:
- how to build summarized genemic features (required by EI) from genomic annotations matrix (provided by users).
- how to get gene causality predictions using corresponding summarized genomic features (input of EI) and our EI model (previously trained on all 12 traits).
Files:
creatX.r: creat summarized gene features.
pred.r: perform prediction on test genes (created by creatX.r) using EI models (previously trained on 12 traits).