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Active Dev Branch#794
kdorheim wants to merge 13 commits into
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@kdorheim

@kdorheim kdorheim commented Oct 27, 2025

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Hector V3.5.5 Release PR

This PR documents the various bug fixes and relatively minor model development included in the V3.5.5 release. While there have been some changes to the structure of the ini files that will cause incompatibility with older ini files much of the hector structure and behavior remains the same, hence only the minor semantic version upgrade.

PRs Dev Type Old-New Test Update? Description
--- minor no documentation changes only
#798 patch no bug fix in the csv output stream visitor to close #795 related to rh_ch4
#799 patch no bug fix in csv output stream, use consistent precision level
#800 patch no use a more robust parser when reading the input csv table
#802 major-ish no changes in the ini file may lead to code breaking, increase the earth c size & remove the initiation of the atmos_co2 pool from the ini file
#810 major-ish no removes the NBP constraint, which is a capability that is not typically used but does change the structure of the ini files, which can be considered code breaking
#806 minor yes update the halocarbon component parameter files, improved documentation, and added halocarbon R helper functions

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Use an explicit csv parser when reading in the input table header
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* Increase the initial earth pool c size for idealized runs 
* Remove the unused initial atmos co2 c pool definition from the ini files
Remove the current implementation of the NBP constraint.
* Update the halocarbon parameter values and fix the units used internally to calculate the emissions-to-concentration conversion factor. 
* Resolve the ambiguity between the unadjusted vs adjusted RF 
* Add missing CH3CCl3 concentration constraint to the example input files and fix the typo in the HFC245fa concentration constraint column missing
* Add the following helper functions: ALL_HALOCARBON_CONCENTRATIONS(), ALL_HALOCARBON_CONSTRAINTS(), ALL_HALOCARBON_EMISSIONS(), ALL_HALOCARBON_RF() to return the strings for all the halocarbon related hector variables
@JGCRI JGCRI deleted a comment from codecov-commenter Sep 1, 2026
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@JGCRI JGCRI deleted a comment from github-actions Bot Sep 1, 2026
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Codecov Report

❌ Patch coverage is 77.57009% with 24 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.25%. Comparing base (662e6ca) to head (c8eb41e).

Files with missing lines Patch % Lines
src/csv_outputstream_visitor.cpp 0.00% 18 Missing ⚠️
R/fxns.R 69.23% 4 Missing ⚠️
src/csv_table_reader.cpp 93.33% 1 Missing ⚠️
src/halocarbon_component.cpp 93.75% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #794      +/-   ##
==========================================
- Coverage   80.39%   80.25%   -0.15%     
==========================================
  Files          61       61              
  Lines        6025     5941      -84     
==========================================
- Hits         4844     4768      -76     
+ Misses       1181     1173       -8     

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rh_ch4 bug(s)

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