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Add ShatterSeek chromothripsis calling with PCAWG confidence tiers - #222

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feat/shatterseek

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Add ShatterSeek chromothripsis calling with PCAWG confidence tiers#222
robert-a-forsyth wants to merge 7 commits into
devfrom
feat/shatterseek

Commits on Oct 14, 2026
- Express SAVANA _2 breakends from the _1 side before collapsing mates
  
  robert-a-forsyth
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  claude
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  30ac555
- Add ShatterSeek chromothripsis calling with PCAWG confidence tiers
  
  robert-a-forsyth
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  claude
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  0cecbfe
- Link the ShatterSeek CHANGELOG entries to #222
  
  robert-a-forsyth
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  86e74d5
Commits on Oct 30, 2026
- Run upstream ShatterSeek with PCAWG high-confidence tiers only
  
  robert-a-forsyth
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  claude
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  23dc8b2
- Merge origin/dev into feat/shatterseek
  
  robert-a-forsyth
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  claude
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  92c81a7
Commits on Nov 3, 2026
- Merge dev (cab487f) into feat/shatterseek
  
  ljwharbers
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- Move SHATTERSEEK_CHROMOTHRIPSIS to subworkflows/local/<name>/main.nf (follows #227)
  
  ljwharbers
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  b25bf2b