Issues

• License clarification for pretrained model weights (release1.pt)

  HeliXonProtein/OmegaFold#80 · Filter by author yakomaxa opened on Sep 4, 2025

• Numpy 2 issue

  HeliXonProtein/OmegaFold#79 · Filter by author e-osipov opened on Mar 23, 2025

• torch.cross without specifying the dim arg is deprecated, use torch.linalg.cross

  HeliXonProtein/OmegaFold#78 · Filter by author fnachon opened on Mar 22, 2025

• Unable to run setup.py on M1 Mac

  HeliXonProtein/OmegaFold#77 · Filter by author rofessori opened on Nov 20, 2024
  1

• Primary sequence

  HeliXonProtein/OmegaFold#76 · Filter by author drdoppio opened on Nov 15, 2024

• OmegaFold weights for Mac / apple silicon

  HeliXonProtein/OmegaFold#75 · Filter by author linkerst opened on Jul 23, 2024
  2

• Google collab error

  HeliXonProtein/OmegaFold#74 · Filter by author irinasspider opened on Jan 29, 2024
  6

• Difference between model 1 and 2

  HeliXonProtein/OmegaFold#73 · Filter by author mcn3159 opened on Jan 24, 2024
  2

• Next Omegafold

  HeliXonProtein/OmegaFold#72 · Filter by author smilenaderi opened on Dec 19, 2023
  3

• Geoformer implementation is different from EdgeAttention described in paper

  HeliXonProtein/OmegaFold#71 · Filter by author jimmieliu opened on Nov 22, 2023

• Exporting model to ONNX format

  HeliXonProtein/OmegaFold#70 · Filter by author elephantpanda opened on Oct 27, 2023

• Exception: Python 3.11.4 (tags/v3.11.4:d2340ef, Jun 7 2023, 05:45:37) [MSC v.1934 64 bit (AMD64)] is not supported.

  HeliXonProtein/OmegaFold#69 · Filter by author Herutriana44 opened on Sep 28, 2023
  7

• ModuleNotFoundError: No module named 'torch'

  HeliXonProtein/OmegaFold#68 · Filter by author ana1878 opened on Jul 15, 2023

• Model 2 error

  HeliXonProtein/OmegaFold#67 · Filter by author vvishwesh opened on Jun 25, 2023
  1

• CUDA error: unknown error

  HeliXonProtein/OmegaFold#66 · Filter by author puddleglum56 opened on Apr 18, 2023

• Why does the edges produced in OmegaPLM become shape (PLM_layers, n , n) instead of (Layers, batch size, n , n)

  HeliXonProtein/OmegaFold#65 · Filter by author WBennett003 opened on Apr 15, 2023

• Model 2 subbatch_size not working

  HeliXonProtein/OmegaFold#64 · Filter by author smilenaderi opened on Apr 12, 2023
  3

• Broken prolines ?

  HeliXonProtein/OmegaFold#63 · Filter by author Lotirador opened on Mar 29, 2023

• Issues with running model2

  HeliXonProtein/OmegaFold#62 · Filter by author s-kyungyong opened on Feb 24, 2023
  2

• OmegaFold - Masking specific residues in input FASTA?

  HeliXonProtein/OmegaFold#61 · Filter by author amorehead opened on Feb 19, 2023

• Can omegaFold be used to predict the composite structure of the heavy and light chains of the antibody

  HeliXonProtein/OmegaFold#60 · Filter by author Licko0909 opened on Feb 15, 2023

• About the possibility of creating decoys (low quality models)

  HeliXonProtein/OmegaFold#59 · Filter by author imabio opened on Jan 30, 2023

• 2nd model release - is 7KPJ part of the train set in this model ?

  HeliXonProtein/OmegaFold#58 · Filter by author YoelShoshan opened on Jan 16, 2023

• where is 3DPorjection function implemented in the ./decoder/StructureModule?

  HeliXonProtein/OmegaFold#57 · Filter by author Kewei2023 opened on Jan 6, 2023

• Where can I find the confidence value of a Prediction on Omegafold ?

  HeliXonProtein/OmegaFold#55 · Filter by author PierrePaillard opened on Dec 1, 2022
  2