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Docs: run artifacts, attribution columns, prefilter opt-in - #77

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Docs: run artifacts, attribution columns, prefilter opt-in#77
Airwhale wants to merge 6 commits into
feat/trackb-run-snapshotsfrom
docs/run-artifacts

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Documentation catch-up for the stack below it — no code changes.

  • README: prefilter marked opt-in in the classification steps; attribution / drug_source added to the treatment_reports column table; note that genuine neutrals are written; Run traceability now covers runs/run_<run_id>/ (the classify_audit.jsonl sidecar + snapshotted inputs) and what extraction_runs.config records.
  • variable_extraction/README: new Outputs entry for output/runs/run_<n>/ snapshots and run_manifest.json.

Stacked on #70 because the Track B paragraph documents #70's feature; everything else describes #73/#74.

🤖 Generated with Claude Code

Shaun and others added 5 commits July 23, 2026 12:07
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
…fault

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
… pairs

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
@Airwhale
Airwhale force-pushed the feat/trackb-run-snapshots branch from 0ffcbea to bdaa2e0 Compare July 23, 2026 19:08
@Airwhale
Airwhale force-pushed the docs/run-artifacts branch from 708c3f7 to c8be287 Compare July 23, 2026 19:08

@Ely-S Ely-S left a comment

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Good documentation, not good PR Description

@Ely-S

Ely-S commented Jul 23, 2026

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Documentation catch-up for the stack below it — no code changes.

  • README: prefilter marked opt-in in the classification steps; attribution / drug_source added to the treatment_reports column table; note that genuine neutrals are written; Run traceability now covers runs/run_<run_id>/ (the classify_audit.jsonl sidecar + snapshotted inputs) and what extraction_runs.config records.
  • variable_extraction/README: new Outputs entry for output/runs/run_<n>/ snapshots and run_manifest.json.

Stacked on #70 because the Track B paragraph documents #70's feature; everything else describes #73/#74.

🤖 Generated with Claude Code

This language does clearly explain this PR

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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