⚡ Bolt: Optimize ifelse() overhead in llcont with vectorized subsetting

[seonghobae]

💡 What: Replaced multiple ifelse() calls in llcont.glm and llcont.hurdle with preallocation and vectorized subsetting.
🎯 Why: ifelse() evaluates both branches entirely before subsetting, causing unnecessary expensive computations (e.g., log(1 - exp(loglik0))) for non-applicable elements.
📊 Impact: Eliminates redundant branch evaluations and ifelse() attribute overhead, improving execution speed for individual log-likelihood calculations.
🔬 Measurement: Verify by profiling llcont() on hurdle or glm model fits with large datasets to observe reduced execution time.

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PR created automatically by Jules for task 11123263841262122999 started by @seonghobae

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[opencode-agent]

Pull request overview

OpenCode cannot approve yet because required coverage evidence did not pass.

Review outcome

1. HIGH .github/workflows/opencode-review.yml:1 - Coverage evidence did not prove required test/docstring evidence

• Problem: The required coverage-evidence job result was failure, so OpenCode cannot establish approval sufficiency for this head.

• Root cause: Automated approval is only valid when the same-head coverage-evidence job proves supported repository test suites passed and configured docstring gates passed or were advisory, or reports not applicable because no supported source files or package manifests exist. Missing, failed, skipped, unavailable, or unsupported-tooling test evidence is a blocker.

• Fix: Install or configure the repository test/docstring evidence tooling when source files or package manifests exist, rerun the current-head coverage-evidence job, and approve only after it reports success with required evidence or explicit no-source not-applicable evidence.

• Regression test: Keep the approval branch checking needs.coverage-evidence.result == success before posting APPROVE, and publish REQUEST_CHANGES when coverage-evidence blocker states such as cancelled, skipped, failed, unsupported-tooling, or below-100 evidence are present.

• Result: REQUEST_CHANGES

• Reason: coverage-evidence result was failure, so required test/docstring evidence was not proven for current head 856320d3cae6bc26061fb182c3b8103418c1900d.

• Head SHA: 856320d3cae6bc26061fb182c3b8103418c1900d

• Workflow run: 29554908795

• Workflow attempt: 1

Coverage evidence

Coverage Decision

• Result: FAIL
• Test evidence: not proven passing
• Docstring evidence: not proven passing when configured
• Failure count: 1

Changed-File Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Changed file (2 files)"]
  S1 --> I1["repository behavior"]
  I1 --> R1["Review risk: Changed file (2 files)"]
  R1 --> V1["required checks"]

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[opencode-agent]

OpenCode Review Overview

• Head SHA: 856320d3cae6bc26061fb182c3b8103418c1900d
• Workflow run: 29554908795
• Workflow attempt: 1
• Gate result: REQUEST_CHANGES (approval step)

Pull request overview

OpenCode cannot approve yet because required coverage evidence did not pass.

Review outcome

1. HIGH .github/workflows/opencode-review.yml:1 - Coverage evidence did not prove required test/docstring evidence

• Problem: The required coverage-evidence job result was failure, so OpenCode cannot establish approval sufficiency for this head.

• Root cause: Automated approval is only valid when the same-head coverage-evidence job proves supported repository test suites passed and configured docstring gates passed or were advisory, or reports not applicable because no supported source files or package manifests exist. Missing, failed, skipped, unavailable, or unsupported-tooling test evidence is a blocker.

• Fix: Install or configure the repository test/docstring evidence tooling when source files or package manifests exist, rerun the current-head coverage-evidence job, and approve only after it reports success with required evidence or explicit no-source not-applicable evidence.

• Regression test: Keep the approval branch checking needs.coverage-evidence.result == success before posting APPROVE, and publish REQUEST_CHANGES when coverage-evidence blocker states such as cancelled, skipped, failed, unsupported-tooling, or below-100 evidence are present.

• Result: REQUEST_CHANGES

• Reason: coverage-evidence result was failure, so required test/docstring evidence was not proven for current head 856320d3cae6bc26061fb182c3b8103418c1900d.

• Head SHA: 856320d3cae6bc26061fb182c3b8103418c1900d

• Workflow run: 29554908795

• Workflow attempt: 1

Coverage evidence

Coverage Decision

• Result: FAIL
• Test evidence: not proven passing
• Docstring evidence: not proven passing when configured
• Failure count: 1

Changed-File Evidence Map

flowchart LR
  PR["PR changed files"] --> Evidence["OpenCode bounded evidence"]
  Evidence --> S1["Changed file (2 files)"]
  S1 --> I1["repository behavior"]
  I1 --> R1["Review risk: Changed file (2 files)"]
  R1 --> V1["required checks"]

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