Add CI and unit tests for Python utilities - #242

Closed

philippmuench wants to merge 10 commits into

Commits on Mar 31, 2026

add CI smoke test workflow and status badge
philippmuench
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4ab0843
trigger CI on add_tests branch
philippmuench
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f98d65a
split CI into smoke test and unit test workflows with separate badges
philippmuench
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c156619
improve README with quick start, parameters, and project structure
philippmuench
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1306ad2
expand unit tests to cover distribution, taxonomy, CIGAR, and strain utilities
philippmuench
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2feda86
expand test coverage to 13 of 17 scripts with ~130 unit tests
philippmuench
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e750b23
fix two failing test assertions
philippmuench
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aa66910
expand to 200 unit tests covering file I/O, CIGAR profiles, taxonomy parsing
philippmuench
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292a499
skip get_genomes tests when biom module not available
philippmuench
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973d903
extend to 247 tests covering config conversion, strain simulation, and file
philippmuench
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fd6645e