yolanfery · Oct 6, 2026 · Oct 6, 2026
diff --git a/README.md b/README.md
@@ -18,13 +18,13 @@ OpenHEXA is an open-source data integration platform developed by [Bluesquare](h
 Its goal is to facilitate data integration and analysis workflows, in particular in the context of public health
 projects.
 
-Please refer to the [OpenHEXA wiki](https://github.com/BLSQ/openhexa/wiki/Home) for more information about OpenHEXA.
+Please refer to the [OpenHEXA documentation](https://docs.openhexa.com/) for more information about OpenHEXA.
 
 This repository contains the code of the OpenHEXA SDK, a library allows you to write code for the OpenHEXA platform.
 It is particularly useful to write OpenHEXA data pipelines, but can also be used in the OpenHEXA notebooks environment.
 
-The OpenHEXA wiki has a section dedicated to the SDK:
-[Using the OpenHEXA SDK](https://github.com/BLSQ/openhexa/wiki/Using-the-OpenHEXA-SDK).
+The OpenHEXA documentation has a section dedicated to the SDK:
+[Using the OpenHEXA SDK](https://docs.openhexa.com/sdk/).
 
 Requirements
 ------------
@@ -116,7 +116,7 @@ pip install -e ".[dev]"  # Necessary to be able to run the openhexa CLI
 
 While it is possible to run pipelines locally using only the SDK, if you want to run OpenHEXA in a more realistic
 setting you will need to install the OpenHEXA app and frontend components. Please refer to the
-[installation instructions](https://github.com/BLSQ/openhexa/wiki/Installation-instructions) for more information.
+[installation instructions](https://docs.openhexa.com/installation/) for more information.
 
 You can then configure the OpenHEXA CLI to connect to your local backend:
 

diff --git a/openhexa/cli/cli.py b/openhexa/cli/cli.py
@@ -628,7 +628,7 @@ def pipelines_run(
 
             click.secho("Open your pipeline directory with VSCode and start the debugging session")
             click.secho(
-                "Visit the wiki for more information: https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#debugging-and-troubleshooting-your-pipelines",
+                "Visit the documentation for more information: https://docs.openhexa.com/writing-pipelines/#debugging-and-troubleshooting-your-pipelines",
                 fg="blue",
             )
 

diff --git a/openhexa/sdk/datasets/__init__.py b/openhexa/sdk/datasets/__init__.py
@@ -1,7 +1,7 @@
 """Datasets package.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#datasets and
-https://github.com/BLSQ/openhexa/wiki/Using-the-OpenHEXA-SDK#working-with-datasets for more information about OpenHEXA
+See https://docs.openhexa.com/datasets/ and
+https://docs.openhexa.com/sdk/#working-with-datasets for more information about OpenHEXA
 dataset.
 """
 

diff --git a/openhexa/sdk/datasets/dataset.py b/openhexa/sdk/datasets/dataset.py
@@ -1,7 +1,7 @@
 """Dataset-related classes and functions.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#datasets and
-https://github.com/BLSQ/openhexa/wiki/Using-the-OpenHEXA-SDK#working-with-datasets for more information about datasets.
+See https://docs.openhexa.com/datasets/ and
+https://docs.openhexa.com/sdk/#working-with-datasets for more information about datasets.
 """
 
 import base64
@@ -425,7 +425,7 @@ def raise_dataset_file_creation_exception(self, errors):
 class Dataset:
     """Datasets are versioned, documented files.
 
-    See https://github.com/BLSQ/openhexa/wiki/Using-the-OpenHEXA-SDK#working-with-datasets for more information.
+    See https://docs.openhexa.com/sdk/#working-with-datasets for more information.
     """
 
     _latest_version = None

diff --git a/openhexa/sdk/files/__init__.py b/openhexa/sdk/files/__init__.py
@@ -1,6 +1,6 @@
 """Files package.
 
-See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#using-file-parameters
+See https://docs.openhexa.com/writing-pipelines/#using-file-parameters
 """
 
 from .file import File

diff --git a/openhexa/sdk/files/file.py b/openhexa/sdk/files/file.py
@@ -1,13 +1,13 @@
 """File-related classes and functions.
 
-See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#using-file-parameters
+See https://docs.openhexa.com/writing-pipelines/#using-file-parameters
 """
 
 
 class File:
     """File class.
 
-    See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#using-file-parameters
+    See https://docs.openhexa.com/writing-pipelines/#using-file-parameters
     """
 
     def __init__(

diff --git a/openhexa/sdk/pipelines/__init__.py b/openhexa/sdk/pipelines/__init__.py
@@ -1,7 +1,7 @@
 """Pipelines package.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#using-pipelines and
-https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines for more information about OpenHEXA pipelines.
+See https://docs.openhexa.com/pipelines/ and
+https://docs.openhexa.com/writing-pipelines/ for more information about OpenHEXA pipelines.
 """
 
 from .parameter import parameter

diff --git a/openhexa/sdk/pipelines/parameter/__init__.py b/openhexa/sdk/pipelines/parameter/__init__.py
@@ -1,6 +1,6 @@
 """Pipeline parameters classes and functions.
 
-See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#pipeline-parameters for more information.
+See https://docs.openhexa.com/writing-pipelines/#pipeline-parameters for more information.
 """
 
 from openhexa.sdk.pipelines.exceptions import InvalidParameterError, ParameterValueError

diff --git a/openhexa/sdk/pipelines/pipeline.py b/openhexa/sdk/pipelines/pipeline.py
@@ -1,7 +1,7 @@
 """Main pipeline module containing the building blocks for OpenHEXA pipelines.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#using-pipelines and
-https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines for more information about OpenHEXA pipelines.
+See https://docs.openhexa.com/pipelines/ and
+https://docs.openhexa.com/writing-pipelines/ for more information about OpenHEXA pipelines.
 """
 
 import argparse

diff --git a/openhexa/sdk/pipelines/task.py b/openhexa/sdk/pipelines/task.py
@@ -1,6 +1,6 @@
 """Classes and functions related to pipeline tasks.
 
-See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#pipelines-and-tasks for more information.
+See https://docs.openhexa.com/writing-pipelines/#pipelines-and-tasks for more information.
 """
 
 from __future__ import annotations
@@ -26,7 +26,7 @@ def __init__(self, task):
 class Task:
     """Tasks are pipeline data processing code units.
 
-    See https://github.com/BLSQ/openhexa/wiki/Writing-OpenHEXA-pipelines#pipelines-and-tasks for more information.
+    See https://docs.openhexa.com/writing-pipelines/#pipelines-and-tasks for more information.
     """
 
     def __init__(self, function: typing.Callable):

diff --git a/openhexa/sdk/workspaces/__init__.py b/openhexa/sdk/workspaces/__init__.py
@@ -1,6 +1,6 @@
 """Workspaces package.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#about-workspaces for more information about OpenHEXA workspaces.
+See https://docs.openhexa.com/workspaces/ for more information about OpenHEXA workspaces.
 """
 
 from .current_workspace import CurrentWorkspace

diff --git a/openhexa/sdk/workspaces/current_workspace.py b/openhexa/sdk/workspaces/current_workspace.py
@@ -1,6 +1,6 @@
 """Workspace-related classes and functions.
 
-See https://github.com/BLSQ/openhexa/wiki/User-manual#about-workspaces for more information.
+See https://docs.openhexa.com/workspaces/ for more information.
 """
 
 import os