host_predict/environment.yaml at master · superphy/host_predict · GitHub

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name: salmonella_kmer
channels:
  - anaconda
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - ca-certificates=2018.03.07=0
  - freetype=2.8=hab7d2ae_1
  - intel-openmp=2018.0.0=8
  - jpeg=9b=h024ee3a_2
  - libedit=3.1.20170329=h6b74fdf_2
  - libffi=3.2.1=hd88cf55_4
  - libgcc-ng=7.2.0=hdf63c60_3
  - libgfortran-ng=7.2.0=hdf63c60_3
  - libpng=1.6.34=hb9fc6fc_0
  - libstdcxx-ng=7.2.0=hdf63c60_3
  - libtiff=4.0.9=he85c1e1_1
  - mkl=2018.0.2=1
  - msgpack-python=0.5.6=py35h6bb024c_0
  - ncurses=6.1=hf484d3e_0
  - numpy=1.12.1=py35hca0bb5e_1
  - olefile=0.45.1=py35_0
  - openssl=1.0.2o=h20670df_0
  - pandas=0.23.0=py35h637b7d7_0
  - pillow=5.1.0=py35h3deb7b8_0
  - pip=10.0.1=py35_0
  - python=3.5.5=hc3d631a_4
  - python-dateutil=2.7.3=py35_0
  - python-lmdb=0.94=py35h14c3975_0
  - pytz=2018.4=py35_0
  - readline=7.0=ha6073c6_4
  - reportlab=3.4.0=py35_0
  - setuptools=39.1.0=py35_0
  - sqlite=3.23.1=he433501_0
  - tk=8.6.7=hc745277_3
  - wheel=0.31.1=py35_0
  - xlrd=1.1.0=py35h45a0a2a_1
  - xz=5.2.4=h14c3975_4
  - zlib=1.2.11=ha838bed_2
  - biopython=1.70=np112py35_1
  - dropbox=5.2.1=py35_0
  - filechunkio=1.6=py35_0
  - ftputil=3.2=py35_0
  - jellyfish=2.2.6=0
  - mmtf-python=1.0.2=py35_0
  - pysftp=0.2.9=py35_0
  - snakemake=3.13.3=py35_0
  - urllib3=1.12=py35_0
  - asciitree=0.3.3=py35_1
  - click=6.7=py_1
  - fasteners=0.14.1=py35_2
  - monotonic=1.5=py_0
  - numcodecs=0.5.5=py35_0
  - python-dotenv=0.8.2=py35_0
  - six=1.11.0=py35_1
  - zarr=2.2.0=py_1
  - asn1crypto=0.24.0=py35_0
  - bcrypt=3.1.4=py35ha35c455_0
  - certifi=2018.4.16=py35_0
  - cffi=1.11.5=py35h9745a5d_0
  - cryptography=2.2.2=py35h14c3975_0
  - docutils=0.14=py35hd11081d_0
  - idna=2.6=py35h8605a33_1
  - libgcc=7.2.0=h69d50b8_2
  - libsodium=1.0.16=h1bed415_0
  - paramiko=2.4.1=py35_0
  - psutil=5.4.5=py35h14c3975_0
  - pyasn1=0.4.3=py35_0
  - pycparser=2.18=py35h61b3040_1
  - pynacl=1.2.1=py35h14c3975_0
  - pyyaml=3.12=py35h46ef4ae_1
  - requests=2.14.2=py35_0
  - scikit-learn=0.19.1=py35hbf1f462_0
  - scipy=1.1.0=py35hfc37229_0
  - wrapt=1.10.11=py35hfdafd39_0
  - yaml=0.1.7=had09818_2
  - pip:
    - lmdb==0.94
prefix: /home/jan/miniconda3/envs/salmonella_kmer