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SteveBronderSteveBronder
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update to 5.0
2 parents 7a9601d + 00314f3 commit d45dff2

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‎doxygen/contributor_help_pages/distribution_tests.md‎

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@@ -28,7 +28,7 @@ Here, I'm just going to describe the steps that are taken to run the tests. Deta
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1. `make generate-tests` is called.
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1. This first builds the `test/prob/generate_tests` executable from `test/prob/generate_tests.cpp`.
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2. For each test file inside `test/prob/*/*`, it will call the executable with the test file as the first argument and the number of template instantiations per file within the second argument. For example, for testing the `bernoulli_log()` function, make will call: `test/prob/generate_tests test/prob/bernoulli/bernoulli_test.hpp 100`
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2. For each test file inside `test/prob/*/*`, it will call the executable with the test file as the first argument and the number of template instantiations per file within the second argument. For example, for testing the `bernoulli_lpmf()` function, make will call: `test/prob/generate_tests test/prob/bernoulli/bernoulli_test.hpp 100`
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The call to the executable will generate 5 different test files, all within the `test/prob/bernoulli/` folder:
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- bernoulli\_00000\_generated\_fd\_test.cpp
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- bernoulli\_00000\_generated\_ffd\_test.cpp

‎runTests.py‎

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allowed_paths_with_jumbo = [
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"test/unit/math/prim/",
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"test/unit/math/prim/constraint",
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"test/unit/math/",
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"test/unit/math/rev/",
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"test/unit/math/rev/constraint",
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"test/unit/math/fwd/",
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"test/unit/math/fwd/constraint",
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"test/unit/math/mix/",
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"test/unit/math/mix/fun/",
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"test/unit/math/opencl/",
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"test/unit/",
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]
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jumbo_folders = [
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"test/unit/math/prim/constraint",
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"test/unit/math/prim/core",
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"test/unit/math/prim/err",
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"test/unit/math/prim/fun",
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"test/unit/math/prim/functor",
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"test/unit/math/prim/meta",
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"test/unit/math/prim/prob",
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"test/unit/math/rev/constraint",
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"test/unit/math/rev/core",
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"test/unit/math/rev/err",
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"test/unit/math/rev/fun",
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"test/unit/math/rev/functor",
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"test/unit/math/rev/meta",
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"test/unit/math/rev/prob",
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"test/unit/math/fwd/constraint",
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"test/unit/math/fwd/core",
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"test/unit/math/fwd/fun",
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"test/unit/math/fwd/functor",
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"test/unit/math/opencl/device_functions",
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"test/unit/math/opencl/kernel_generator",
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"test/unit/math/opencl/prim",
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"test/unit/math/opencl/prim/constraint",
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"test/unit/math/opencl/rev",
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"test/unit/math/opencl/rev/constraint",
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]
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‎stan/math/fwd.hpp‎

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#ifdef STAN_OPENCL
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#include <stan/math/opencl/prim.hpp>
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#include <stan/math/opencl/prim_constraint.hpp>
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#endif
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#include <stan/math/fwd/constraint.hpp>
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#include <stan/math/fwd/core.hpp>
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#include <stan/math/fwd/meta.hpp>
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#include <stan/math/fwd/fun.hpp>

‎stan/math/fwd/constraint.hpp‎

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#ifndef STAN_MATH_FWD_CONSTRAINT_HPP
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#define STAN_MATH_FWD_CONSTRAINT_HPP
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#include <stan/math/prim/fun/Eigen.hpp>
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#include <stan/math/fwd/fun/Eigen_NumTraits.hpp>
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#include <stan/math/fwd/constraint/unit_vector_constrain.hpp>
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#endif

stan/math/fwd/fun/unit_vector_constrain.hpp renamed to stan/math/fwd/constraint/unit_vector_constrain.hpp

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#ifndef STAN_MATH_FWD_FUN_UNIT_VECTOR_CONSTRAIN_HPP
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#define STAN_MATH_FWD_FUN_UNIT_VECTOR_CONSTRAIN_HPP
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#ifndef STAN_MATH_FWD_CONSTRAINT_UNIT_VECTOR_CONSTRAIN_HPP
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#define STAN_MATH_FWD_CONSTRAINT_UNIT_VECTOR_CONSTRAIN_HPP
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#include <stan/math/fwd/core.hpp>
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#include <stan/math/fwd/fun/tcrossprod.hpp>
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#include <stan/math/prim/fun/dot_self.hpp>
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#include <stan/math/prim/fun/Eigen.hpp>
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#include <stan/math/prim/fun/inv.hpp>
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#include <stan/math/prim/fun/unit_vector_constrain.hpp>
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#include <stan/math/prim/constraint/unit_vector_constrain.hpp>
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#include <stan/math/prim/fun/tcrossprod.hpp>
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#include <cmath>
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‎stan/math/fwd/fun.hpp‎

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#include <stan/math/fwd/fun/trigamma.hpp>
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#include <stan/math/fwd/fun/trunc.hpp>
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#include <stan/math/fwd/fun/typedefs.hpp>
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#include <stan/math/fwd/fun/unit_vector_constrain.hpp>
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#include <stan/math/fwd/constraint/unit_vector_constrain.hpp>
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#include <stan/math/fwd/fun/value_of.hpp>
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#include <stan/math/fwd/fun/value_of_rec.hpp>
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‎stan/math/mix.hpp‎

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#include <stan/math/mix/fun.hpp>
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#include <stan/math/mix/functor.hpp>
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#include <stan/math/fwd/constraint.hpp>
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#include <stan/math/fwd/core.hpp>
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#include <stan/math/fwd/meta.hpp>
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#include <stan/math/fwd/fun.hpp>
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#ifdef STAN_OPENCL
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#include <stan/math/opencl/rev.hpp>
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#include <stan/math/opencl/rev_constraint.hpp>
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#endif
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#include <stan/math/rev/constraint.hpp>
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#include <stan/math/rev/core.hpp>
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#include <stan/math/rev/meta.hpp>
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#include <stan/math/rev/fun.hpp>

‎stan/math/opencl/prim.hpp‎

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#include <stan/math/opencl/zeros_strict_tri.hpp>
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#include <stan/math/opencl/qr_decomposition.hpp>
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#include <stan/math/opencl/prim_constraint.hpp>
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#include <stan/math/opencl/prim/add_diag.hpp>
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#include <stan/math/opencl/prim/append_array.hpp>
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#include <stan/math/opencl/prim/bernoulli_cdf.hpp>
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#include <stan/math/opencl/prim/inv_cloglog.hpp>
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#include <stan/math/opencl/prim/inv_gamma_lpdf.hpp>
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#include <stan/math/opencl/prim/inv_sqrt.hpp>
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#include <stan/math/opencl/prim/lb_constrain.hpp>
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#include <stan/math/opencl/prim/log_mix.hpp>
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#include <stan/math/opencl/prim/log_softmax.hpp>
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#include <stan/math/opencl/prim/logistic_cdf.hpp>
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#include <stan/math/opencl/prim/lognormal_lccdf.hpp>
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#include <stan/math/opencl/prim/lognormal_lcdf.hpp>
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#include <stan/math/opencl/prim/lognormal_lpdf.hpp>
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#include <stan/math/opencl/prim/lub_constrain.hpp>
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#include <stan/math/opencl/prim/matrix_power.hpp>
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#include <stan/math/opencl/prim/mdivide_left_tri_low.hpp>
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#include <stan/math/opencl/prim/mdivide_right_tri_low.hpp>
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#include <stan/math/opencl/prim/normal_lcdf.hpp>
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#include <stan/math/opencl/prim/normal_lpdf.hpp>
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#include <stan/math/opencl/prim/num_elements.hpp>
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#include <stan/math/opencl/prim/offset_multiplier_constrain.hpp>
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#include <stan/math/opencl/prim/ordered_logistic_glm_lpmf.hpp>
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#include <stan/math/opencl/prim/ordered_logistic_lpmf.hpp>
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#include <stan/math/opencl/prim/pareto_cdf.hpp>
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#include <stan/math/opencl/prim/to_row_vector.hpp>
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#include <stan/math/opencl/prim/to_vector.hpp>
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#include <stan/math/opencl/prim/trace.hpp>
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#include <stan/math/opencl/prim/ub_constrain.hpp>
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#include <stan/math/opencl/prim/uniform_cdf.hpp>
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#include <stan/math/opencl/prim/uniform_lccdf.hpp>
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#include <stan/math/opencl/prim/uniform_lcdf.hpp>
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#include <stan/math/opencl/prim/uniform_lpdf.hpp>
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#include <stan/math/opencl/prim/unit_vector_constrain.hpp>
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#include <stan/math/opencl/prim/variance.hpp>
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#include <stan/math/opencl/prim/weibull_cdf.hpp>
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#include <stan/math/opencl/prim/weibull_lccdf.hpp>

stan/math/opencl/prim/lb_constrain.hpp renamed to stan/math/opencl/prim/constraint/lb_constrain.hpp

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#ifndef STAN_MATH_OPENCL_PRIM_LB_CONSTRAIN_HPP
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#define STAN_MATH_OPENCL_PRIM_LB_CONSTRAIN_HPP
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#ifndef STAN_MATH_OPENCL_PRIM_CONSTRAINT_LB_CONSTRAIN_HPP
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#define STAN_MATH_OPENCL_PRIM_CONSTRAINT_LB_CONSTRAIN_HPP
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#ifdef STAN_OPENCL
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#include <stan/math/opencl/prim/sum.hpp>

stan/math/opencl/prim/lub_constrain.hpp renamed to stan/math/opencl/prim/constraint/lub_constrain.hpp

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#ifndef STAN_MATH_OPENCL_PRIM_LUB_CONSTRAIN_HPP
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#define STAN_MATH_OPENCL_PRIM_LUB_CONSTRAIN_HPP
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#ifndef STAN_MATH_OPENCL_PRIM_CONSTRAINT_LUB_CONSTRAIN_HPP
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#define STAN_MATH_OPENCL_PRIM_CONSTRAINT_LUB_CONSTRAIN_HPP
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#ifdef STAN_OPENCL
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#include <stan/math/opencl/prim/sum.hpp>

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