From 9724b0572663498163ba52de04fc6b318c4c5244 Mon Sep 17 00:00:00 2001 From: "Tapabrata \"Topo\" Pal" Date: Mon, 12 Oct 2026 08:02:04 -0400 Subject: [PATCH 1/2] deps: grove v0.63.6 (Go and TypeScript compiler-declared symbols) Co-Authored-By: Claude Opus 5.5 Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX --- go.mod | 2 +- go.sum | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/go.mod b/go.mod index ce738e0..3b2cf8b 100644 --- a/go.mod +++ b/go.mod @@ -4,7 +4,7 @@ go 1.26 require ( github.com/fsnotify/fsnotify v1.10.1 - github.com/provasign/grove v0.63.5 + github.com/provasign/grove v0.63.6 modernc.org/sqlite v1.59.0 ) diff --git a/go.sum b/go.sum index 8f9afae..3695247 100644 --- a/go.sum +++ b/go.sum @@ -18,8 +18,8 @@ github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 h1:Jamvg5psRI github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4= github.com/provasign/astkit v0.16.1 h1:4r3aPO8KiJSpU5OcVl2xGO804v/OHa86P4cDfSRMTBM= github.com/provasign/astkit v0.16.1/go.mod h1:uSQxIxw3dVpK/6KmHvqIE8+DK/nhxDuPklKv7g96Jr4= -github.com/provasign/grove v0.63.5 h1:RpaE0udpPQpQLPaSH8Czvdt4j0UpT+7ldE0k/UJloeU= -github.com/provasign/grove v0.63.5/go.mod h1:pZlx48HT4boUnCaFpItMl7poPbVZ08L7bcvrfmKAj9o= +github.com/provasign/grove v0.63.6 h1:dUNR5Vt1/K/mMGtvTuKl3hA1xlApZjCBWDnPKirNusA= +github.com/provasign/grove v0.63.6/go.mod h1:pZlx48HT4boUnCaFpItMl7poPbVZ08L7bcvrfmKAj9o= github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec h1:W09IVJc94icq4NjY3clb7Lk8O1qJ8BdBEF8z0ibU0rE= github.com/remyoudompheng/bigfft v0.0.0-20230129092748-24d4a6f8daec/go.mod h1:qqbHyh8v60DhA7CoWK5oRCqLrMHRGoxYCSS9EjAz6Eo= github.com/smacker/go-tree-sitter v0.0.0-20240827094217-dd81d9e9be82 h1:6C8qej6f1bStuePVkLSFxoU22XBS165D3klxlzRg8F4= From efe3b0d217b7b7f326d996ee5255e3f6c771fc41 Mon Sep 17 00:00:00 2001 From: "Tapabrata \"Topo\" Pal" Date: Mon, 12 Oct 2026 08:02:04 -0400 Subject: [PATCH 2/2] chore(shale): session evidence --- ...98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4.yaml | 76 + .../b078ae73-7c6b-4498-a9f7-eeada0292d5a.yaml | 2041 +++++++++++++++++ 2 files changed, 2117 insertions(+) create mode 100644 .shale/1d98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4.yaml create mode 100644 .shale/b078ae73-7c6b-4498-a9f7-eeada0292d5a.yaml diff --git a/.shale/1d98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4.yaml b/.shale/1d98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4.yaml new file mode 100644 index 0000000..7da4a99 --- /dev/null +++ b/.shale/1d98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4.yaml @@ -0,0 +1,76 @@ +shale_version: "0" +id: 1d98ffa0-a6f9-4e00-a1df-8929a0eb1923-c4 +created_at: 2026-10-12T03:38:05.291672Z +finalized_at: 2026-10-12T12:02:04.437667Z +agent: + tool: "" + adapter_version: 0.1.0 +repo: + root_hint: prism + branch: deps/grove-compiler-declared-go-ts +privacy: redacted +commands: + - cmd: 'git diff --stat 49f8f450 HEAD -- . '':(exclude).shale'' | tail -1; echo "(only .shale differs from the gated candidate if empty)"; git tag -a v0.87.9 -m "v0.87.9: change_impact is compiler-backed for Java declarations the parser missed (grove v0.63.5: javac declarations; gson TypeAdapter.write family 6->31 overrides in TypeAdapters.java, ''closed'' now true); bare names never resolve silently (chi URLParam retry loop, hono request, jackson serializeWithType families); one-time re-index after upgrade (extractor version bump)" 2fdb1e1d && git push -q origin v0.87.9 2>&1 | tail -1; git ls-remote --tags origin v0.87.9' + at: 2026-10-12T03:38:05.291672Z + classified: other + - cmd: 'until [ "$(gh run list --branch v0.87.9 --limit 3 --json status -q ''length'')" -gt 0 ] && [ "$(gh run list --branch v0.87.9 --limit 3 --json status -q ''[.[]|select(.status!="completed")]|length'')" = "0" ]; do sleep 20; done; gh run list --branch v0.87.9 --limit 3 --json name,conclusion -q ''.[]|.name+": "+.conclusion''; gh release view v0.87.9 --json assets -q ''[.assets[].name]|join(" ")''; S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/1d98ffa0-a6f9-4e00-a1df-8929a0eb1923/scratchpad; cd $S && gh release download v0.87.9 -R provasign/prism -p ''prism-v0.87.9-darwin-arm64'' -p checksums.txt --clobber && grep darwin-arm64 checksums.txt | shasum -a 256 -c - && chmod +x prism-v0.87.9-darwin-arm64 && ./prism-v0.87.9-darwin-arm64 --version && gh workflow run "Refresh formulae" -R provasign/homebrew-shale && echo tap-dispatched' + at: 2026-10-12T03:38:20.159332Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bdjja98b1.output + at: 2026-10-12T03:40:35.462214Z + classified: other + - cmd: |- + until [ "$(gh run view 38200683107 -R provasign/homebrew-shale --json status -q .status)" = completed ]; do sleep 15; done; gh run view 38200683107 -R provasign/homebrew-shale --json conclusion -q '"tap: "+.conclusion'; gh api repos/provasign/homebrew-shale/contents/Formula/prism.rb -q .content | base64 -d | grep -m1 version; until [ "$(gh run list --branch main --limit 5 --json headSha,status -q '[.[]|select(.headSha|startswith("2fdb1e1d"))|select(.status!="completed")]|length')" = "0" ] && [ "$(gh run list --branch main --limit 5 --json headSha -q '[.[]|select(.headSha|startswith("2fdb1e1d"))]|length')" -gt 0 ]; do sleep 20; done; gh run list --branch main --limit 5 --json headSha,name,conclusion -q '.[]|select(.headSha|startswith("2fdb1e1d"))|"main "+.name+": "+.conclusion'; brew update -q >/dev/null 2>&1; brew upgrade provasign/shale/prism 2>&1 | tail -1; prism --version; wt=~/prism-ab-bins/nbreplay/wt/deephard__gson__TypeAdapter_writeValue_swap; cd $wt && rm -rf .grove && prism change-impact TypeAdapter.write --format json . 2>/dev/null | python3 -c " + import json,sys; d=json.load(sys.stdin); f=d['family'] + print('smoke: family',len(f),'| TypeAdapters.java overrides',sum(x['filePath'].endswith('bind/TypeAdapters.java') for x in f),'|',d['completeness'],'safe',d['safeToClaimComplete'])" + at: 2026-10-12T03:40:44.1536Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && git status --short | head -10; git branch --show-current + at: 2026-10-12T03:40:47.214202Z + classified: other + - cmd: "cd /Users/tapabratapal/Projects/provasign/research && git checkout -q -b ci/family-size-invariant && git add harness/scoring/ci_invariants.py harness/tasks/gson-typeadapter-write.json && git commit -q -F - <<'EOF'\nci_invariants: family-size invariant (gson TypeAdapter.write == Spoon oracle 55)\n\nThe ceiling tasks score change-impact sites at file:name granularity, so 25\noverrides collapsing into one file cannot move them. gson's TypeAdapters.java\ndeclares 25 TypeAdapter.write overrides as anonymous classes in static field\ninitializers; prism <= v0.87.8 indexed 6 of 31 and still reported the family\nclosed. New check: declarations + family under gson/src/main must equal the\nSpoon oracle's count (55). v0.87.8 on a fresh index: 29 (fails); v0.87.9\n(grove v0.63.5, astkit v0.16.1): 55. Adds the gson corpus (pin dae37cf0).\n\nCo-Authored-By: Claude Opus 5.5 \nClaude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX\nEOF\ngit push -q -u origin ci/family-size-invariant 2>&1 | grep -v \"^remote:\\|^$\" | tail -1; gh pr create --base main --head ci/family-size-invariant --title \"ci_invariants: family-size invariant (gson TypeAdapter.write == Spoon oracle 55)\" --body \"The ceiling tasks score change-impact sites at file:name granularity, so 25 overrides collapsing into one file can't move them. This adds a count check: gson \\`TypeAdapter.write\\` declarations plus family under \\`gson/src/main\\` must equal the Spoon oracle's 55. On a fresh index, prism v0.87.8 gives 29 and fails. v0.87.9 gives 55. Adds the gson corpus, pinned at dae37cf0.\n\n\U0001F916 Generated with [Claude Code](https://claude.com/claude-code)\n\nhttps://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX\"" + at: 2026-10-12T03:41:02.698315Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && until [ "$(gh pr checks 1 --json bucket 2>/dev/null | jq 'length' 2>/dev/null || echo 0)" != "" ]; do sleep 10; done; gh pr checks 1 2>&1 | tail -5 + at: 2026-10-12T03:41:07.796552Z + classified: other + - cmd: 'cd /Users/tapabratapal/Projects/provasign/research && until gh pr checks 1 --json bucket 2>/dev/null | jq -e ''length>0 and all(.bucket!="pending")'' >/dev/null; do sleep 30; done; gh pr checks 1 --json name,bucket -q ''.[]|.name+": "+.bucket''; run=$(gh pr checks 1 --json link -q ''.[0].link'' | sed ''s#.*/runs/\([0-9]*\)/.*#\1#''); gh run view $run --log 2>/dev/null | grep -E "prism v|Family-size|gson |All invariants|REGRESSION" | sed ''s/^.*Z //'' | head -6' + at: 2026-10-12T03:41:13.420691Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/b14a8az5y.output + at: 2026-10-12T03:43:45.299949Z + classified: other + - cmd: 'cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bx703ar2x.output 2>/dev/null; cd /Users/tapabratapal/Projects/provasign/research && gh pr checks 1 --json name,bucket -q ''.[]|.name+": "+.bucket''; cd ../prism && git branch --show-current; git status --short | grep -v __pycache__ | head -3; ls ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory/ | grep -i "handoff"' + at: 2026-10-12T03:47:16.591623Z + classified: other + - cmd: |- + cd /Users/tapabratapal/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && python3 - <<'EOF' + import re + p="MEMORY.md"; s=open(p).read() + line="- [START HERE — handoff 2026-10-12](project_handoff_2026_10_12.md) — v0.87.9 RELEASED (grove v0.63.5, astkit v0.16.1); open: research PR #1 merge, Topo decision on #22/#49 (recommend close), Windows runtime crash, sentence->graph router next\n" + s=s.replace("# Memory Index\n\n","# Memory Index\n\n"+line,1) + s=re.sub(r"^- \[Release prep v0.87.9 2026-10-12\].*$","- [Release v0.87.9 2026-10-12](project_release_prep_0879_2026_10_12.md) — RELEASED: name resolution (grove #21, prism #48) + compiler declarations; background compiler pass built but OFF (grove #22, prism #49 drafts, measured slower)",s,flags=re.M) + s=re.sub(r"^- \[Compiler declarations 2026-10-12\].*$","- [Compiler declarations 2026-10-12](project_compiler_declarations_2026_10_12.md) — RELEASED in grove v0.63.5/astkit v0.16.1: javac declarations as Java universe; gson TypeAdapter.write 6->31 overrides; family-size invariant = research PR #1",s,flags=re.M) + open(p,"w").write(s) + p="project_release_prep_0879_2026_10_12.md"; s=open(p).read() + s=s.replace('description: "2026-10-12 Topo: fix the rest then release.','description: "RELEASED 2026-10-12 as prism v0.87.9 / grove v0.63.5 / astkit v0.16.1. Topo: fix the rest then release.') + s+="\nRELEASED 2026-10-12: astkit #5 -> v0.16.1; grove #21, #20 (+astkit bump, eval module bump) -> v0.63.5 (12 assets);\nprism #48 (+grove bump) -> v0.87.9; Windows CI crash on #48 was the known runtime family, rerun passed; tap 0.87.9.\n" + open(p,"w").write(s) + EOF + head -3 MEMORY.md | cut -c1-150 + at: 2026-10-12T03:47:43.382081Z + classified: other + - cmd: |- + cd /Users/tapabratapal/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && python3 - <<'EOF' + p="project_release_prep_0879_2026_10_12.md"; s=open(p).read() + s=s.replace("because it measured slower; all PRs open, nothing merged or released; integration branches local\"","because it measured slower (#22/#49 still open drafts awaiting Topo); integration branches local\"") + s=s.replace("Research family-size invariant still uncommitted (commit after release).","Research family-size invariant: research PR #1 (opened after release).") + open(p,"w").write(s) + EOF + grep -c "nothing merged or released" project_release_prep_0879_2026_10_12.md + at: 2026-10-12T03:47:48.661683Z + classified: other +notes: + - text: continuation of session 1d98ffa0-a6f9-4e00-a1df-8929a0eb1923 — events captured after its evidence was finalized + at: 2026-10-12T03:38:05.291672Z +redactions: 0 diff --git a/.shale/b078ae73-7c6b-4498-a9f7-eeada0292d5a.yaml b/.shale/b078ae73-7c6b-4498-a9f7-eeada0292d5a.yaml new file mode 100644 index 0000000..b787a37 --- /dev/null +++ b/.shale/b078ae73-7c6b-4498-a9f7-eeada0292d5a.yaml @@ -0,0 +1,2041 @@ +shale_version: "0" +id: b078ae73-7c6b-4498-a9f7-eeada0292d5a +created_at: 2026-10-12T03:49:26.951552Z +finalized_at: 2026-10-12T12:02:04.437667Z +agent: + tool: claude-code + model: claude-opus-5-5 + adapter_version: 0.1.0 +repo: + root_hint: prism + branch: deps/grove-compiler-declared-go-ts +privacy: redacted +commands: + - cmd: gh pr view 1 -R provasign/research --json state,mergeable,statusCheckRollup --jq '{state,mergeable,checks:[.statusCheckRollup[]|{name,conclusion}]}' 2>&1 | head -30; gh pr list -R provasign/grove --state open --json number,title,isDraft; gh pr list -R provasign/prism --state open --json number,title,isDraft + at: 2026-10-12T03:49:41.955785Z + classified: other + - cmd: git branch -vv && echo ---GROVE && git -C ../grove branch -vv && git -C ../grove stash list | head + at: 2026-10-12T03:51:25.90447Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign && for r in prism grove; do echo "=== $r"; git -C $r fetch --prune -q origin; git -C $r worktree list; for b in $(git -C $r for-each-ref --format='%(refname:short)' refs/heads); do + if git -C $r merge-base --is-ancestor $b origin/main 2>/dev/null; then s=merged; elif [ -n "$(git -C $r branch -r --contains $b 2>/dev/null)" ]; then s=on-remote; else s=LOCAL-ONLY; fi; echo "$s $b"; done | sort; done + at: 2026-10-12T03:51:37.978048Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign && git -C prism branch | wc -l; git -C grove branch | wc -l; git -C prism tag -l 'archive/*'; git -C grove tag -l 'archive/*' + at: 2026-10-12T03:52:08.776832Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign && for r in prism grove; do echo "== $r"; git -C $r branch; git -C $r tag -l 'archive/*'; done + at: 2026-10-12T03:53:04.780821Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign && keep=" main exp/task-sentence feat/compiler-provisional feat/deferred-native investigate/windows-crash fix/regex-recovery-comments "; for r in prism grove; do for b in $(git -C $r for-each-ref --format='%(refname:short)' refs/heads); do case "$keep" in *" $b "*) continue;; esac; if git -C $r merge-base --is-ancestor $b origin/main || [ -n "$(git -C $r branch -r --contains $b)" ]; then git -C $r branch -D -q $b; else git -C $r tag archive/$b $b && git -C $r branch -D -q $b && echo "archived $r $b"; fi; done; done; for r in prism grove; do echo "== $r"; git -C $r branch; done; git -C grove stash list | wc -l + at: 2026-10-12T03:53:22.184985Z + classified: other + - cmd: cd ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && cat project_issue5_run_2026_10_11.md project_issue42_run_2026_10_11.md project_issue_bed_pairs_2026_10_11.md | head -150 + at: 2026-10-12T03:58:56.186447Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && ls; ls results | grep -i manifest; ls results | grep bench-v087 ; git -C .. log --oneline -5; git -C .. status --short | head + at: 2026-10-12T03:59:00.87694Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && python3 -c " + import json + for f in ['compiled8-manifest.json','issue5-manifest.json']: + m=json.load(open(f)); print(f, type(m).__name__, json.dumps(m)[:600]) + "; ls bench-v0877-compiled8-2026-10-11 | head; cat bench-v0877-compiled8-2026-10-11/*.md 2>/dev/null | head -40; grep -l compiled8 ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory/*.md + at: 2026-10-12T03:59:05.64208Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && python3 - <<'EOF' + import json,glob,os + for f in ['deephard-manifest.json','deephard12-task-manifest.json','deephard-rerun3-manifest.json']: + m=json.load(open(f)); print(f, [t for t in m if any(k in t for k in ('gson','jackson','dubbo','java','spring','guava','commons'))]) + for p in sorted(glob.glob('bench-v0877-compiled8-2026-10-11/*.json')): + d=json.load(open(p)) + keys=[k for k in d if k in('resolved','passed','score','cost_usd','total_cost_usd','num_turns','status')] + print(os.path.basename(p), {k:d[k] for k in keys}) + EOF + at: 2026-10-12T03:59:11.997202Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && ls bench-v0877-compiled8-2026-10-11 2>/dev/null; ls results/bench-v0877-compiled8-2026-10-11 | grep jackson; ls tasks | head; ls tasks | wc -l + at: 2026-10-12T03:59:17.930574Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && ls tasks/e2e | head -5; ls tasks/e2e | wc -l; f=$(ls tasks/e2e/*.json 2>/dev/null | head -1); [ -n "$f" ] && python3 -c "import json,sys;d=json.load(open('$f'));print(list(d.keys()) if isinstance(d,dict) else type(d))" + at: 2026-10-12T03:59:21.745598Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 -c " + import json;d=json.load(open('tasks/e2e/apache__commons-collections__pr700.json'));print(type(d), (d[:3] if isinstance(d,list) else ''))"; ls tasks/e2e | grep -v json | head + at: 2026-10-12T03:59:35.8427Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 - <<'EOF' + import json,glob,re,os + res={} + for p in glob.glob('results/bench-v0877-*/*.json'): + b=os.path.basename(p) + try: d=json.load(open(p)) + except: continue + if not isinstance(d,dict) or 'resolved' not in d: continue + res.setdefault(b.split('.claude')[0],{})[b.split('.')[-2]]=d['resolved'] + post=set(json.load(open('results/issue-post-cutoff-manifest.json'))) + rows=[] + for f in glob.glob('tasks/e2e/*.json'): + d=json.load(open(f)) + if not isinstance(d,dict) or d.get('lang')!='java' or not d.get('valid',True) or 'patch' not in d: continue + p=d['patch'] + files=[x for x in re.findall(r'^\+\+\+ b/(\S+)',p,re.M) if not re.search(r'[Tt]est',x)] + hunks=len(re.findall(r'^@@',p,re.M)) + ov=len(re.findall(r'^[+-].*@Override',p,re.M)) + anon=len(re.findall(r'^[+-].*new \w+(<[^>]*>)?\([^)]*\)\s*\{',p,re.M)) + rows.append((len(files),hunks,ov,anon,d['instance_id'],d.get('prompt_source'),d['instance_id'] in post,res.get(d['instance_id']))) + rows.sort(reverse=True) + for r in rows[:30]: print(r) + print(len(rows)) + EOF + at: 2026-10-12T03:59:46.276797Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && python3 - <<'EOF' + import json,glob,os + ids=['deephard__jackson-databind__withType_typeser_first','deep__jackson-databind__acceptJsonFormatVisitor_add_provider','wide__jackson-databind__JsonSerializer_isEmpty','deephard__jackson-databind__report_overloads_JavaType','deephard__gson__TypeAdapter_writeValue_swap','wide__jackson-databind__ContextualSerializer_createContextual','deep__gson__TypeAdapterFactory_create_Optional','deep__jackson-databind__supportsUpdate_OptBoolean'] + for i in ids: + print('##',i) + rows=[] + for p in glob.glob(f'*/{i}.*.json')+glob.glob(f'*/*/{i}.*.json'): + if 'archive' in p: continue + try: d=json.load(open(p)) + except: continue + if not isinstance(d,dict): continue + rows.append((os.path.getmtime(p),p.split('/')[0],p.split('.')[-2],d.get('resolved'),round(d.get('cost_usd') or 0,2),d.get('num_turns'))) + for r in sorted(rows)[-6:]: print(' ',r[1],r[2],r[3],'$',r[4],'turns',r[5]) + EOF + at: 2026-10-12T03:59:55.813105Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 - <<'EOF' + import json,glob,re,os + res={} + for p in glob.glob('results/bench-v0877-issue*/*.json'): + b=os.path.basename(p) + try: d=json.load(open(p)) + except: continue + if not isinstance(d,dict) or 'resolved' not in d: continue + res.setdefault(b.split('.claude')[0],{})[b.split('.')[-2][:5]]=(d['resolved'],round(d.get('cost_usd') or 0,2)) + post=set(json.load(open('results/issue-post-cutoff-manifest.json'))) + bad={'FasterXML__jackson-databind__pr6030','FasterXML__jackson-databind__pr6044','FasterXML__jackson-databind__pr6215','FasterXML__jackson-dataformat-xml__pr885','apache__dubbo__pr16325','google__gson__pr3116','google__gson__pr3057','FasterXML__jackson-databind__pr6052'} + for f in sorted(glob.glob('tasks/e2e/*.json')): + d=json.load(open(f)) + if not isinstance(d,dict) or d.get('lang')!='java' or d.get('prompt_source')!='issue' or 'patch' not in d: continue + i=d['instance_id'] + p=d['patch'] + files=[x for x in re.findall(r'^\+\+\+ b/(\S+)',p,re.M) if not re.search(r'[Tt]est',x)] + ov=len(re.findall(r'^[+-].*@Override',p,re.M)) + print(f"{i:45} post={i in post!s:5} files={len(files)} hunks={len(re.findall(r'^@@',p,re.M)):2} ov={ov} bad={i in bad!s:5} {res.get(i)}") + EOF + at: 2026-10-12T04:00:58.297776Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && python3 bench.py --help 2>&1 | head -60; which prism; prism --version; ls results/bench-v0877-issue5-2026-10-11 | grep -v -e diff -e '\.json$' + at: 2026-10-12T04:01:05.97166Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && head -20 results/bench-v0877-issue5-2026-10-11/driver.log; python3 bench.py run --help 2>&1 | sed -n 1,80p + at: 2026-10-12T04:01:08.078468Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && python3 bench.py list-suites; grep -n -i -B2 -A6 'issue' docs/BENCH.md | head -40 + at: 2026-10-12T04:01:11.60753Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && grep -rn "issue5-manifest\|bench-v0877-issue" --include=*.py --include=*.sh --include=*.md . 2>/dev/null | grep -v results/ | head; ls runners tools | head -40 + at: 2026-10-12T04:01:14.093713Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && grep -rln "issue5-manifest\|# .* tasks x " runners tools lib 2>/dev/null | head; git -C .. show --stat 63a5198f | head -20 + at: 2026-10-12T04:01:16.926529Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && sed -n 1,60p runners/run_e2e.py | grep -v '^$'; grep -n "add_argument" runners/run_e2e.py | head -40 + at: 2026-10-12T04:01:19.158947Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && sed -n 1060,1140p runners/run_e2e.py + at: 2026-10-12T04:01:22.605717Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && cat runners/bench_matrix.py | sed -n 1,40p; grep -n "add_argument\|E2E_OUT\|results/" runners/bench_matrix.py | head -30 + at: 2026-10-12T04:01:22.610998Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && grep -n "^OUT\|E2E_OUT\|OUT =" runners/run_e2e.py | head; grep -n "sonnet" runners/run_e2e.py | head -8; grep -n "PRISM_BIN_FOR_ARM\s*=" -A8 runners/ab_endtoend_arms.py + at: 2026-10-12T04:01:25.908252Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && echo '["google__gson__pr3098"]' > results/java5-probe-manifest.json && echo '["FasterXML__jackson-databind__pr6076","FasterXML__jackson-databind__pr6061","google__gson__pr3098","google__gson__pr3059","google__gson__pr3112"]' > results/java5-issue-manifest.json && docker info >/dev/null 2>&1 && echo docker-ok; mkdir -p results/bench-v0879-java5-2026-10-12 + at: 2026-10-12T04:01:32.79588Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && E2E_OUT=results/bench-v0879-java5-2026-10-12 PRISM_INIT_BIN=/opt/homebrew/bin/prism python3 runners/run_e2e.py results/java5-probe-manifest.json --models claude-sonnet-5-5 --arms native,prism_init > results/bench-v0879-java5-2026-10-12/driver.log 2>&1 + at: 2026-10-12T04:01:32.832048Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java5-2026-10-12 && cat driver.log; ls; python3 - <<'EOF' + import json,glob + for p in sorted(glob.glob('*.json')): + d=json.load(open(p)) + print(p, d.get('resolved'), d.get('cost_usd'), d.get('num_turns'), {k:d[k] for k in d if 'prism' in k.lower() or 'version' in k.lower() or 'tool' in k.lower()} ) + print(' score:', json.dumps(d.get('score'))[:400]) + EOF + at: 2026-10-12T04:04:28.836427Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java5-2026-10-12 && ls transcripts; grep -o 'v0\.87\.[0-9]*' -r transcripts | sort | uniq -c | head; grep -o 'opt/homebrew/bin/prism\|prism-ab-bins[^"]*' -r transcripts | sort | uniq -c | head + at: 2026-10-12T04:04:32.677798Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && grep -n "def _prism_bin" -A12 runners/run_e2e.py | head -20; grep -n "prism_version\|--version" runners/run_e2e.py | head + at: 2026-10-12T04:04:34.83947Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && E2E_OUT=results/bench-v0879-java5-2026-10-12 PRISM_INIT_BIN=/opt/homebrew/bin/prism python3 runners/run_e2e.py results/java5-issue-manifest.json --models claude-sonnet-5-5 --arms native,prism_init >> results/bench-v0879-java5-2026-10-12/driver.log 2>&1 + at: 2026-10-12T04:04:39.243321Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 -c " + import json;d=json.load(open('tasks/e2e/google__gson__pr3098.json'));print(d['problem_statement'][:1500]);print('----GOLD');print(d['patch'][:3500]);print('F2P',d['fail_to_pass'])"; echo ----PRISM; cat results/bench-v0879-java5-2026-10-12/google__gson__pr3098.claude-sonnet-5-5.prism_init.diff | head -80 + at: 2026-10-12T04:04:42.530578Z + classified: other + - cmd: tail -20 /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bx703ar2x.output; gh pr view 1 -R provasign/research --json state,statusCheckRollup --jq '{state,c:[.statusCheckRollup[]|{name,conclusion}]}' + at: 2026-10-12T04:10:34.959941Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && git fetch -q origin; git show origin/ci/family-size-invariant:.github/workflows/engine-invariants.yml | grep -n -i -B2 -A8 'prism' | head -60 + at: 2026-10-12T04:10:38.783723Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java5-2026-10-12 && tail -14 driver.log; python3 - <<'EOF' + import json,glob,collections + old={} + for p in glob.glob('../bench-v0877-issue*/*.json'): + try:d=json.load(open(p)) + except:continue + if isinstance(d,dict) and 'resolved' in d: old[(d['task'],d['arm'])]=(d['resolved'],d.get('cost_usd')) + tot=collections.Counter() + for p in sorted(glob.glob('*.claude-*.json')): + d=json.load(open(p)); t=d['task']; a=d['arm']; tu=d.get('tool_usage',{}) + s=d['score'] + tot[a+'_cost']+=d['cost_usd']; tot[a+'_calls']+=tu.get('tool_calls',0); tot[a+'_res']+=bool(d['resolved']) + print(f"{t:40} {a:10} res={d['resolved']!s:5} f2p={s.get('f2p_ok')} p2p={s.get('p2p_ok')} ${d['cost_usd']:.2f} calls={tu.get('tool_calls')} prism={tu.get('prism_ops')} | v0877 {old.get((t,a))}") + print(dict(tot)) + EOF + at: 2026-10-12T04:10:50.686834Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 -c " + import json;d=json.load(open('tasks/e2e/FasterXML__jackson-databind__pr6076.json'));print(d['problem_statement'][:1200]);print('----GOLD');print(d['patch'][:3000])"; for a in native prism_init; do echo "----$a"; grep '^[-+@]' results/bench-v0879-java5-2026-10-12/FasterXML__jackson-databind__pr6076.claude-sonnet-5-5.$a.diff | head -40; done + at: 2026-10-12T04:10:55.600779Z + classified: other + - cmd: |- + cd ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && python3 - <<'EOF' + p='MEMORY.md';s=open(p).read() + line='- [Java5 issue run 2026-10-12](project_java5_issue_run_2026_10_12.md) — v0.87.9 vs native on 5 both-fail Java issue tasks: 0/5 both, cost 0.97x, 0 change_impact; issue bed cannot show Java index fixes\n' + i=s.index('- [Release v0.87.9') + open(p,'w').write(s[:i]+line+s[i:]) + EOF + at: 2026-10-12T04:11:09.510827Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && git status --short | grep -v '^??' | head; git branch --show-current; git worktree list | head -3 + at: 2026-10-12T04:13:18.539448Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research && git status -sb | head -1 && sed -i '' 's/PRISM_VERSION: "v0.87.0"/PRISM_VERSION: "v0.87.9"/' .github/workflows/engine-invariants.yml && git diff --stat && git add .github/workflows/engine-invariants.yml && git commit -q -m "ci: pin prism v0.87.9 for the invariant suite (family-size invariant needs it) + + Co-Authored-By: Claude Opus 5.5 + Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX" && git push -q origin ci/family-size-invariant && git log --oneline -1 + at: 2026-10-12T04:13:24.043402Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && sleep 20; for i in $(seq 1 40); do c=$(gh pr view 1 --json statusCheckRollup --jq '[.statusCheckRollup[]|.conclusion]|join(",")'); [ -n "$c" ] && [ "$c" != "," ] && { echo "$c"; break; }; sleep 30; done; gh run list --branch ci/family-size-invariant -L 1 --json databaseId,conclusion,headSha --jq '.[0]' + at: 2026-10-12T04:13:27.330662Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness && echo '["FasterXML__jackson-databind__pr6039","FasterXML__jackson-databind__pr6042","FasterXML__jackson-databind__pr6047","FasterXML__jackson-databind__pr6056","FasterXML__jackson-databind__pr6102","FasterXML__jackson-databind__pr6138","FasterXML__jackson-databind__pr6155","FasterXML__jackson-databind__pr6186","apache__dubbo__pr16348","apache__dubbo__pr16350","apache__dubbo__pr16391","apache__dubbo__pr16395","google__gson__pr3067"]' > results/java13-resolved-manifest.json && mkdir -p results/bench-v0879-java13-2026-10-12 && E2E_OUT=results/bench-v0879-java13-2026-10-12 PRISM_INIT_BIN=/opt/homebrew/bin/prism python3 runners/run_e2e.py results/java13-resolved-manifest.json --models claude-sonnet-5-5 --arms native,prism_init > results/bench-v0879-java13-2026-10-12/driver.log 2>&1 + at: 2026-10-12T04:19:10.913229Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12 && cat driver.log; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/be8uu29jx.output 2>/dev/null; gh pr view 1 -R provasign/research --json statusCheckRollup --jq '[.statusCheckRollup[]|.status+"/"+.conclusion]' + at: 2026-10-12T04:23:11.484319Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 - <<'EOF' + import json + d=json.load(open('results/bench-v0879-java13-2026-10-12/FasterXML__jackson-databind__pr6042.claude-sonnet-5-5.prism_init.json')) + print(json.dumps(d['score'])[:600]); print(d.get('tool_usage')) + t=json.load(open('tasks/e2e/FasterXML__jackson-databind__pr6042.json')); print('GOLD\n',t['patch'][:1500]) + EOF + echo ---DIFF; cat results/bench-v0879-java13-2026-10-12/FasterXML__jackson-databind__pr6042.claude-sonnet-5-5.prism_init.diff | head -60; echo ---OLD; cat results/bench-v0877-issue42-2026-10-11/FasterXML__jackson-databind__pr6042.claude-sonnet-5-5.prism_init.diff 2>/dev/null | head -30 + at: 2026-10-12T04:23:16.865266Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && python3 - <<'EOF' + import json,glob,os + old={} + for p in glob.glob('bench-v0877-issue*/*.json'): + try:d=json.load(open(p)) + except:continue + if isinstance(d,dict) and 'resolved' in d: old[(d['task'],d['arm'])]=(d['resolved'],d.get('cost_usd') or 0) + new={} + for p in glob.glob('bench-v0879-java13-2026-10-12/*.claude-*.json'): + d=json.load(open(p)); new[(d['task'],d['arm'])]=(d['resolved'],d['cost_usd'],d.get('tool_usage',{}).get('tool_calls')) + ids=json.load(open('java13-resolved-manifest.json')) + f=lambda r: '—' if r is None else ('PASS' if r[0] else 'FAIL') + for i in ids: + n,p=new.get((i,'native')),new.get((i,'prism_init')) + on,op=old.get((i,'native')),old.get((i,'prism_init')) + c=f" ${n[1]:.2f}/{p[1]:.2f} ({p[1]/n[1]:.2f}x) calls {n[2]}/{p[2]}" if n and p else '' + print(f"{i.split('__')[-2]+' '+i.split('__')[-1]:28} now N={f(n):4} P={f(p):4}{c} | v0877 N={f(on)} P={f(op)}") + EOF + tail -3 bench-v0879-java13-2026-10-12/driver.log + at: 2026-10-12T04:24:24.275035Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && git log --oneline -12 && ls && ls native 2>/dev/null | head -40 + at: 2026-10-12T04:26:29.152579Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && git show --stat 4d41fcd0 | head -40; git show --stat fa9d162e | head -20; ls internal; ls internal/native 2>/dev/null + at: 2026-10-12T04:26:31.663683Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && wc -l *.go | sort -n | tail -20; for f in go.go js_ts.go csharp.go cfamily.go rust.go php.go python.go; do echo "=== $f"; sed -n 1,30p $f | grep -v '^import\|^$\|^\t"' | head -18; done + at: 2026-10-12T04:26:35.516041Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && grep -n 'exec.Command\|commandExists(\|go/types\|types.Config\|packages.Load\|"clang\|rust-analyzer\|roslyn\|dotnet\|"node"' *.go | grep -v _test | head -40 + at: 2026-10-12T04:26:39.538398Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && git show 4d41fcd0 -- internal/index/indexer.go internal/native/native.go internal/native/java.go | head -150 + at: 2026-10-12T04:26:45.822894Z + classified: other + - cmd: 'cd /Users/tapabratapal/Projects/provasign/grove && grep -n "compilerDeclared\|func javacDecl\|type javacDecl" internal/native/*.go | head; n=$(grep -n "^func compilerDeclaredSymbols" internal/native/javac.go | cut -d: -f1); sed -n "$((n-30)),$((n+120))p" internal/native/javac.go' + at: 2026-10-12T04:26:51.298259Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12 && grep -c resolved= driver.log; tail -4 driver.log; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/be8uu29jx.output + at: 2026-10-12T04:26:59.162149Z + classified: other + - cmd: ls ~/ci-corpus/ 2>/dev/null; ls /tmp/ci-corpus 2>/dev/null | head; ls ~/ci-corpus/*/.grove 2>/dev/null | head -5 + at: 2026-10-12T04:27:04.361859Z + classified: other + - cmd: 'cd ~/ci-corpus && for d in gin typeorm grafana-120119 django; do echo "$d: $(ls $d/.grove 2>/dev/null | tr ''\n'' '' '') $(find $d -name ''*.go'' -not -path ''*/vendor/*'' 2>/dev/null | wc -l) go, $(find $d -name ''*.ts'' -not -path ''*/node_modules/*'' 2>/dev/null | wc -l) ts"; done; sqlite3 commons-collections/.grove/grove.db ''.tables''; sqlite3 commons-collections/.grove/grove.db ''.schema symbols'' | head -30' + at: 2026-10-12T04:27:07.707399Z + classified: other + - cmd: mkdir -p /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/gocensus && cd ~/ci-corpus/gin && sqlite3 .grove/grove.db "select value from meta" | head; sqlite3 .grove/grove.db "select key,value from meta" 2>/dev/null | head; sqlite3 .grove/grove.db "select kind,count(*) from symbols where language='go' group by kind" + at: 2026-10-12T04:27:15.388372Z + classified: other + - cmd: cd /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/gocensus && (test -f go.mod || go mod init gocensus >/dev/null 2>&1) && go build -o gocensus . && ./gocensus ~/ci-corpus/gin + at: 2026-10-12T04:27:35.533935Z + classified: build + - cmd: cd ~/ci-corpus/grafana-120119 && sqlite3 .grove/grove.db "select value from meta where key='extractor-version'"; /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/gocensus/gocensus . 2>&1 | grep -v '^ ' ; /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/gocensus/gocensus . 2>&1 | grep -A4 '^embedded\|^localtype' | grep -v _test | head + at: 2026-10-12T04:27:44.465169Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && grep -n "^func \|types.Info{\|Defs\b\|Defs:\|Result{" go.go | head -60 + at: 2026-10-12T04:27:54.324108Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -n 92,212p go.go; sed -n 389,590p go.go + at: 2026-10-12T04:27:56.784577Z + classified: other + - cmd: cd ~/ci-corpus/gin && sqlite3 -header .grove/grove.db "select id,kind,name,qualified_name,parent_symbol,signature,span_start,span_end,modifiers,exports from symbols where file_path='context.go' and (kind in ('struct','field','interface','type') ) limit 8"; sqlite3 .grove/grove.db "select id,kind,name,qualified_name,parent_symbol,signature from symbols where kind='method' and parent_symbol is not null and file_path like '%render.go' limit 3"; grep -n "embedded\|Embedded" /Users/tapabratapal/Projects/provasign/astkit/*/go*.go 2>/dev/null | head + at: 2026-10-12T04:28:04.527965Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/astkit && grep -rn -i "embed" --include=*.go . | grep -i "go\b\|golang\|field_declaration\|struct" | grep -v _test | head -20; grep -rln "field_declaration" --include=*.go . | head + at: 2026-10-12T04:28:08.365353Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/astkit && grep -rn -i "embed" --include='*.go' . | grep -v '_test.go' | head -20 + at: 2026-10-12T04:28:10.425482Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/astkit && sed -n 175,240p strategies/extractors.go + at: 2026-10-12T04:28:12.593742Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/astkit && grep -rn -i "local type\|function-local\|inside a function\|func body\|function body" --include='*.go' strategies lang* 2>/dev/null | grep -v _test | head; ls + at: 2026-10-12T04:28:23.351083Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/astkit && sed -n 2495,2540p strategies/extractors.go + at: 2026-10-12T04:28:26.228325Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -n 340,390p go.go; sed -n 618,715p go.go + at: 2026-10-12T04:28:36.515689Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && grep -rn "compiler-declared" --include='*.go' internal pkg | grep -v _test | head -20 + at: 2026-10-12T04:28:49.931525Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && sed -n 345,400p internal/store/store.go; grep -n "nativeResult\|AnalyzeChangedFiles\|unchanged.*symbols\|LoadSymbols\|AllSymbols" internal/index/indexer.go | head -30 + at: 2026-10-12T04:28:52.616739Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal && grep -rn 'hasModifier\|HasModifier\|"enum-variant"\|"declaration"\|"anonymous"' --include='*.go' graph core native index | grep -v _test | head -30 + at: 2026-10-12T04:29:03.18491Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -n 715,770p go.go; sed -n 906,975p go.go; sed -n 775,800p javac.go + at: 2026-10-12T04:29:23.988779Z + classified: other + - cmd: 'cd /Users/tapabratapal/Projects/provasign/grove && git status --short | head && git fetch -q origin && git checkout -q -b feat/go-compiler-declared origin/main && git log --oneline -1 && grep -n "javacDecl" -r internal | grep -v "^internal/native/javac.go" ' + at: 2026-10-12T04:29:50.148461Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && prism change-impact compilerDeclaredSymbols 2>&1 | head -30; prism change-impact goResolveType 2>&1 | head -20; prism change-impact newGoSymbolIndex 2>&1 | head -20; prism change-impact newGoNativeIndex 2>&1 | head -20 + at: 2026-10-12T04:29:57.634133Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && prism change-impact goSemanticPackageEdges goSemanticEdges 2>&1 | grep -E '"(filePath|name|line)"' | paste - - - | sort -u | head -20 + at: 2026-10-12T04:30:00.911697Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && for s in goSemanticPackageEdges goSemanticEdges; do prism change-impact $s 2>&1 | python3 -c " + import json,sys + d=json.load(sys.stdin); print('$s', d.get('completeness'), [(c['filePath'],c['name'],c.get('evidence',[{}])[0].get('line')) for c in d.get('callers',[])])"; done + at: 2026-10-12T04:30:03.790103Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -i '' 's/\bjavacDecl\b/compilerDecl/g' javac.go javacdecls_test.go && grep -n "compilerDecl\b" javac.go javacdecls_test.go | head + at: 2026-10-12T04:30:07.777672Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && perl -pi -e 's/\bjavacDecl\b/compilerDecl/g' javac.go javacdecls_test.go && grep -n "compilerDecl\b\|javacDecl" javac.go javacdecls_test.go | head + at: 2026-10-12T04:30:10.309138Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='javac.go'; s=open(p).read() + old_head='''// type) so every downstream pass treats them as ordinary symbols. + func compilerDeclaredSymbols(req Request, decls []compilerDecl) []core.SymbolRecord { + if len(decls) == 0 { + return nil + } + byFile := map[string][]core.SymbolRecord{} + for _, s := range req.Symbols { + if s.Language == "java" {''' + new_head='''// type) so every downstream pass treats them as ordinary symbols. + func compilerDeclaredSymbols(req Request, decls []compilerDecl) []core.SymbolRecord { + return compilerDeclaredSymbolsFor(req, "java", decls) + } + + // compilerDeclaredSymbolsFor is compilerDeclaredSymbols for any language whose + // analyzer reports compilerDecls (Java's javac, Go's go/types). + func compilerDeclaredSymbolsFor(req Request, language string, decls []compilerDecl) []core.SymbolRecord { + if len(decls) == 0 { + return nil + } + byFile := map[string][]core.SymbolRecord{} + for _, s := range req.Symbols { + if s.Language == language {''' + assert s.count(old_head)==1; s=s.replace(old_head,new_head) + old_kind=''' case "class": + kind = core.KindClass''' + new_kind=''' case "class": + kind = core.KindClass + case "struct": + kind = core.KindStruct + case "type": + kind = core.KindType''' + assert s.count(old_kind)==1; s=s.replace(old_kind,new_kind) + old_sig=''' signature := strings.TrimSpace(src[d.Start-1]) + modifiers := []string{"compiler-declared"}''' + new_sig=''' signature := strings.TrimSpace(src[d.Start-1]) + if d.Signature != "" { + signature = d.Signature + } + modifiers := append([]string{"compiler-declared"}, d.Modifiers...)''' + assert s.count(old_sig)==1; s=s.replace(old_sig,new_sig) + old_rec=''' ID: id, FilePath: d.File, BlobSHA: parsed[0].BlobSHA, Language: "java", + Kind: kind, Name: d.Name, QualifiedName: d.Qualified, Signature: signature, + Span: core.LineRange{Start: d.Start, End: d.End}, RawText: raw, + ParentSymbol: parent, Modifiers: modifiers,''' + new_rec=''' ID: id, FilePath: d.File, BlobSHA: parsed[0].BlobSHA, Language: language, + Kind: kind, Name: d.Name, QualifiedName: d.Qualified, Signature: signature, + Span: core.LineRange{Start: d.Start, End: d.End}, RawText: raw, + ParentSymbol: parent, Modifiers: modifiers, Annotations: d.Annotations,''' + assert s.count(old_rec)==1; s=s.replace(old_rec,new_rec) + open(p,'w').write(s) + EOF + gofmt -l . ; go build ./... && echo ok + at: 2026-10-12T04:30:25.448572Z + classified: build + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && gofmt -d javac.go | head -30 + at: 2026-10-12T04:30:27.523137Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && gofmt -w javac.go && python3 - <<'EOF' + p='go.go'; s=open(p).read() + + # 1. goSemanticPackageEdges returns local declarations too + old='''func goSemanticPackageEdges(root, pkgPath, dir string, files []string, symbolIdx goSymbolIndex, pkgDirsByImport map[string][]string, projectImporter types.Importer) ([]core.Edge, error) {''' + new='''func goSemanticPackageEdges(root, pkgPath, dir string, files []string, symbolIdx goSymbolIndex, pkgDirsByImport map[string][]string, projectImporter types.Importer) ([]core.Edge, []compilerDecl, error) {''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' err = fmt.Errorf("%s: no syntax tree", file) + } + return nil, err''' + new=''' err = fmt.Errorf("%s: no syntax tree", file) + } + return nil, nil, err''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' pkg, _ := conf.Check(pkgPath, fset, parsed, info) + dispatch := newGoInterfaceDispatch(pkg, root, dir, fset, symbolIdx, pkgDirsByImport) + ''' + new=''' pkg, _ := conf.Check(pkgPath, fset, parsed, info) + dispatch := newGoInterfaceDispatch(pkg, root, dir, fset, symbolIdx, pkgDirsByImport) + decls, localTypes := goLocalDecls(fset, files, parsed, info) + ''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' case *ast.Ident: + if typ, ok := goResolveType(dir, n, info, symbolIdx, pkgDirsByImport, pkg); ok && typ.ID != caller.ID {''' + new=''' case *ast.Ident: + if qualified, ok := localTypes[info.Uses[n]]; ok { + // A function-local type is declared in this function's + // own file: its compiler-declared record shares the + // caller's file and blob. + add(core.Edge{ + From: caller.ID, + To: caller.FilePath + "::" + qualified + "@" + caller.BlobSHA, + Type: core.EdgeUsesType, + Confidence: 0.97, + Source: core.EvidenceSourceNative, + }) + return true + } + if typ, ok := goResolveType(dir, n, info, symbolIdx, pkgDirsByImport, pkg); ok && typ.ID != caller.ID {''' + assert s.count(old)==1; s=s.replace(old,new) + # final return of goSemanticPackageEdges + i=s.index('func goSemanticPackageEdges(') + j=s.index('\n}\n',i) + body=s[i:j] + assert body.rstrip().endswith('return edges, nil'), body[-80:] + body=body.rstrip()[:-len('return edges, nil')]+'return edges, decls, nil' + s=s[:i]+body+s[j:] + + # 2. goSemanticEdges collects them + old='''func goSemanticEdges(ctx context.Context, root string, files []string, symbols []core.SymbolRecord, pkgs []goListPackage, exports map[string]string) ([]core.Edge, []string) {''' + new='''func goSemanticEdges(ctx context.Context, root string, files []string, symbols []core.SymbolRecord, pkgs []goListPackage, exports map[string]string) ([]core.Edge, []compilerDecl, []string) {''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' type dirOutcome struct { + edges []core.Edge + err error + }''' + new=''' type dirOutcome struct { + edges []core.Edge + decls []compilerDecl + err error + }''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' e, err := goSemanticPackageEdges(root, pkgPath, dirs[di], filesByDir[dirs[di]], symbolIdx, pkgDirsByImport, projectImporter) + outcomes[di] = dirOutcome{edges: e, err: err}''' + new=''' e, d, err := goSemanticPackageEdges(root, pkgPath, dirs[di], filesByDir[dirs[di]], symbolIdx, pkgDirsByImport, projectImporter) + outcomes[di] = dirOutcome{edges: e, decls: d, err: err}''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' edges = append(edges, o.edges...) + } + diagnostics = append(diagnostics, "resolved "+itoa(countEdgesOfType(edges, core.EdgeCalls))+" native call edge(s)") + diagnostics = append(diagnostics, "resolved "+itoa(countEdgesOfType(edges, core.EdgeUsesType))+" native type-use edge(s)") + return edges, diagnostics''' + new=''' edges = append(edges, o.edges...) + decls = append(decls, o.decls...) + } + diagnostics = append(diagnostics, "resolved "+itoa(countEdgesOfType(edges, core.EdgeCalls))+" native call edge(s)") + diagnostics = append(diagnostics, "resolved "+itoa(countEdgesOfType(edges, core.EdgeUsesType))+" native type-use edge(s)") + return edges, decls, diagnostics''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' var edges []core.Edge + var diagnostics []string + dirs := make([]string, 0, len(filesByDir))''' + new=''' var edges []core.Edge + var decls []compilerDecl + var diagnostics []string + dirs := make([]string, 0, len(filesByDir))''' + assert s.count(old)==1; s=s.replace(old,new) + + # 3. Analyze turns them into symbols + old=''' semanticEdges, semanticDiagnostics := goSemanticEdges(ctx, req.Root, semFiles, req.Symbols, pkgs, exports)''' + new=''' semanticEdges, decls, semanticDiagnostics := goSemanticEdges(ctx, req.Root, semFiles, req.Symbols, pkgs, exports) + // go/types attributed every declaration in the checked packages; the ones + // the parser does not index (types declared inside function bodies and + // their members) become compiler-declared symbols, as javac's do. + declared := compilerDeclaredSymbolsFor(req, "go", decls) + if len(declared) > 0 { + files := map[string]bool{} + for _, d := range declared { + files[d.FilePath] = true + } + semanticDiagnostics = append(semanticDiagnostics, "go/types declared "+itoa(len(declared))+" symbol(s) in "+itoa(len(files))+" file(s) the parser did not index; added as compiler-declared symbols") + }''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' return Result{ + Edges: edges, + Partial: partial, + Diagnostics: append(head, semanticDiagnostics...), + }''' + new=''' return Result{ + Edges: edges, + Partial: partial, + Diagnostics: append(head, semanticDiagnostics...), + Symbols: declared, + }''' + assert s.count(old)==1; s=s.replace(old,new) + + # 4. local symbols never join the name-keyed indexes + old=''' for _, symbol := range symbols { + if symbol.Language != "go" { + continue + } + dir := packageDir(symbol.FilePath) + switch symbol.Kind {''' + new=''' for _, symbol := range symbols { + if symbol.Language != "go" || goLocalSymbol(symbol) { + continue + } + dir := packageDir(symbol.FilePath) + switch symbol.Kind {''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' seenFile := map[string]bool{} + for _, symbol := range symbols { + if symbol.Language != "go" { + continue + } + if symbol.Kind == core.KindFunction {''' + new=''' seenFile := map[string]bool{} + for _, symbol := range symbols { + if symbol.Language != "go" || goLocalSymbol(symbol) { + continue + } + if symbol.Kind == core.KindFunction {''' + assert s.count(old)==1; s=s.replace(old,new) + + # 5. goResolveType: a local type never resolves by package + name + old=''' obj, ok := info.Uses[ident].(*types.TypeName) + if !ok { + return core.SymbolRecord{}, false + } + dirs := goObjectDirs(''' + new=''' obj, ok := info.Uses[ident].(*types.TypeName) + if !ok || goLocalObject(obj) { + // A function-local type is not the package-level type of the same + // name; goSemanticPackageEdges links it to its own declaration. + return core.SymbolRecord{}, false + } + dirs := goObjectDirs(''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + echo done + at: 2026-10-12T04:30:51.887029Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && head -3 go.mod && sed -n 1170,1180p internal/native/native_test.go && go build ./... 2>&1 | head + at: 2026-10-12T04:31:11.867004Z + classified: build + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && perl -pi -e 's/edges, diagnostics := goSemanticEdges\(/edges, _, diagnostics := goSemanticEdges(/' internal/native/native_test.go && go vet ./internal/native/ && go test ./internal/native/ 2>&1 | tail -5 + at: 2026-10-12T04:31:20.764881Z + classified: lint + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && sed -n 1140,1170p internal/native/native_test.go; sed -n 1,40p internal/native/javacdecls_test.go | head -30; sed -n 105,128p internal/native/javacdecls_test.go + at: 2026-10-12T04:31:25.067174Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go test ./internal/native/ -run 'TestGoLocal|TestGoSemantic|TestCompilerDeclared' -v 2>&1 | tail -20 + at: 2026-10-12T04:31:44.055447Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && perl -pi -e 's/idx\.byType\["\\x00opts"\]\.ID/idx.byType[packageDir("main.go")+"\\x00opts"].ID/' internal/native/go_localdecls_test.go && grep -n 'byType\[' internal/native/go_localdecls_test.go && go test ./internal/native/ 2>&1 | tail -3 + at: 2026-10-12T04:31:51.672759Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && sed -n 25,45p internal/parser/languages.go + at: 2026-10-12T04:31:57.15105Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && grep -n "ExtractorVersion\s*=" -r internal --include='*.go' | head; grep -n "2026-10-12.1" -r internal --include='*.go' + at: 2026-10-12T04:31:57.172954Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && python3 - <<'EOF' + p='internal/parser/languages.go'; s=open(p).read() + old='''// astkit's Java field-initializer / initializer-block declarations. + const ExtractorVersion = "2026-10-12.1"''' + new='''// astkit's Java field-initializer / initializer-block declarations. + // 2026-10-13.1: go/types compiler-declared symbols (function-local types and + // their fields and interface methods). + const ExtractorVersion = "2026-10-13.1"''' + assert s.count(old)==1; open(p,'w').write(s.replace(old,new)) + EOF + go build ./... && echo ok + at: 2026-10-12T04:32:02.299743Z + classified: build + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && perl -pi -e 's/2026-10-13\.1/2026-10-12.2/g' internal/parser/languages.go && grep -n "2026-10-12.2" internal/parser/languages.go; cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12 && grep -c resolved= driver.log + at: 2026-10-12T04:32:05.508441Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; mkdir -p $S/ws $S/bin && cd $S/ws && cat > go.work < $S/cmp/edgediff.sh <<'EOF' + #!/bin/sh + # edgediff.sh BASE_DB NEW_DB : symbol counts, edge counts by type, edges only in one side + B=$1; N=$2 + for d in $B $N; do echo "== $d"; sqlite3 $d "select 'symbols',count(*) from symbols; select 'compiler-declared',count(*) from symbols where modifiers like '%compiler-declared%'; select edge_type||'/'||source, count(*) from edges group by 1 order by 1"; done + sqlite3 $N "attach '$B' as b; + select 'only-new', edge_type, count(*) from edges where id not in (select id from b.edges) group by edge_type; + select 'only-base', edge_type, count(*) from b.edges where id not in (select id from main.edges) group by edge_type; + select 'only-new touching local', count(*) from edges e where id not in (select id from b.edges) and (from_node in (select id from symbols where modifiers like '%\"local\"%') or to_node in (select id from symbols where modifiers like '%\"local\"%'));" + EOF + chmod +x $S/cmp/edgediff.sh; $S/cmp/edgediff.sh $S/cmp/gin-base/.grove/grove.db $S/cmp/gin-new/.grove/grove.db + at: 2026-10-12T04:32:32.6902Z + classified: other + - cmd: du -sh --exclude=.grove ~/ci-corpus/grafana-120119 2>/dev/null || du -sh ~/ci-corpus/grafana-120119; df -h /private/tmp | tail -1 + at: 2026-10-12T04:32:38.543341Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; for v in base new; do rsync -a --exclude .grove ~/ci-corpus/grafana-120119/ $S/cmp/graf-$v/; done; cd $S/cmp/graf-base && /usr/bin/time -p prism index . > $S/cmp/graf-base.log 2>&1; cd $S/cmp/graf-new && /usr/bin/time -p $S/bin/prism-godecl index . > $S/cmp/graf-new.log 2>&1; grep real $S/cmp/graf-*.log; $S/cmp/edgediff.sh $S/cmp/graf-base/.grove/grove.db $S/cmp/graf-new/.grove/grove.db | grep -v '^calls\|^imports\|^extends\|^implements' + at: 2026-10-12T04:32:42.823143Z + classified: other + - cmd: cd /tmp && node -v && node -e "console.log(require.resolve('typescript'), require('typescript').version)"; cd /Users/tapabratapal/Projects/provasign/grove/internal/native && grep -n "tsScript\s*=\|const tsScript" *.go | head -3 + at: 2026-10-12T04:32:49.460999Z + classified: other + - cmd: sqlite3 ~/ci-corpus/typeorm/.grove/grove.db "select key, substr(value,1,300) from meta where key in ('native-complete','index-native','extractor-version')"; npm root -g; ls $(npm root -g) | head; sed -n 85,130p /Users/tapabratapal/Projects/provasign/grove/internal/native/js_ts.go + at: 2026-10-12T04:32:53.302868Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; mkdir -p $S/tscensus && cd $S/tscensus && npm init -y >/dev/null && npm install --silent typescript@5 2>&1 | tail -2; node -e "console.log(require('typescript').version)" + at: 2026-10-12T04:33:00.913823Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/tscensus && node census.js ~/ci-corpus/typeorm 2>&1 | head -80 + at: 2026-10-12T04:33:19.821817Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/tscensus && perl -pi -e 's/^const total = \{\}, missing = \{\};/const total = Object.create(null), missing = Object.create(null);/' census.js && node census.js ~/ci-corpus/typeorm 2>&1 | head -90 + at: 2026-10-12T04:33:25.803094Z + classified: build + - cmd: cd ~/ci-corpus/typeorm && sqlite3 .grove/grove.db "select kind,name,qualified_name,span_start,span_end from symbols where file_path='src/driver/mongodb/bson.typings.ts' and span_start<60 order by span_start" | head -20; sed -n 1,12p src/driver/mongodb/bson.typings.ts; sed -n 38,50p src/container.ts; sqlite3 .grove/grove.db "select kind,name,qualified_name,span_start,span_end from symbols where file_path='src/container.ts'" + at: 2026-10-12T04:33:33.09867Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/tscensus && cat > why.js <<'EOF' + const ts=require('typescript'),fs=require('fs'),path=require('path'),{execFileSync}=require('child_process'); + const root=process.argv[2]; + const rows=execFileSync('sqlite3',['-separator','\t',path.join(root,'.grove/grove.db'),"select file_path,name,span_start,span_end from symbols where language in ('typescript','javascript','tsx','jsx')"],{maxBuffer:1<<30}).toString().split('\n'); + const syms=new Map();for(const r of rows){const f=r.split('\t');if(f.length<4)continue;if(!syms.has(f[0]))syms.set(f[0],[]);syms.get(f[0]).push({name:f[1],s:+f[2],e:+f[3]});} + const why=Object.create(null);const ex=Object.create(null); + for(const [rel] of syms){ if(!/\.(ts|tsx|mts|cts|js|jsx|mjs|cjs)$/.test(rel))continue; let text;try{text=fs.readFileSync(path.join(root,rel),'utf8')}catch{continue} + const sf=ts.createSourceFile(rel,text,ts.ScriptTarget.Latest,true);const line=p=>sf.getLineAndCharacterOfPosition(p).line+1; + (function v(n){ + const k=n.kind; + const member=[ts.SyntaxKind.MethodDeclaration,ts.SyntaxKind.GetAccessor,ts.SyntaxKind.SetAccessor,ts.SyntaxKind.Constructor,ts.SyntaxKind.PropertyDeclaration,ts.SyntaxKind.FunctionDeclaration].includes(k); + if(member && !(k===ts.SyntaxKind.MethodDeclaration&&ts.isObjectLiteralExpression(n.parent))){ + const name=k===ts.SyntaxKind.Constructor?'constructor':(n.name&&n.name.text)||''; + if(name){const s=line(n.getStart(sf)),e=line(n.end); + const ok=(syms.get(rel)||[]).some(x=>x.name===name&&!(x.s>e||(x.e||x.s)m.kind===ts.SyntaxKind.DeclareKeyword))||rel.endsWith('.d.ts')||/typings/.test(rel); + if(!n.body&&k!==ts.SyntaxKind.PropertyDeclaration){ + const sib=(cls.members||cls.statements||[]).some(m=>m!==n&&m.body&&((m.name&&m.name.text)===name||(k===ts.SyntaxKind.Constructor&&m.kind===k))); + r=sib?'overload-signature':(ambient?'ambient-bodyless':'bodyless'); + } else if(cls&&ts.isClassExpression(cls)) r='class-expression-member'; + else if(k===ts.SyntaxKind.Constructor) r='constructor-with-body'; + else if(k===ts.SyntaxKind.GetAccessor||k===ts.SyntaxKind.SetAccessor) r='accessor-with-body'; + else r='other-'+ts.SyntaxKind[k]; + why[r]=(why[r]||0)+1;(ex[r]=ex[r]||[]).push(rel+':'+s+' '+name); + }} + } + ts.forEachChild(n,v);})(sf); + } + for(const r of Object.keys(why).sort()){console.log(r.padEnd(26),why[r]);for(const x of ex[r].slice(0,3))console.log(' ',x)} + EOF + node why.js ~/ci-corpus/typeorm + at: 2026-10-12T04:33:50.11505Z + classified: build + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/beq0eznrk.output 2>/dev/null | tail -40 + at: 2026-10-12T04:34:02.878662Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -n 130,365p js_ts.go | grep -n "" | sed -n 1,400p | grep -v '^\s*[0-9]*:\s*//' | head -150 + at: 2026-10-12T04:34:06.518712Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/be8uu29jx.output; cd /Users/tapabratapal/Projects/provasign/research && gh pr view 1 --json statusCheckRollup,mergeable,headRefOid --jq '{m:.mergeable,h:.headRefOid,c:[.statusCheckRollup[]|.conclusion]}' + at: 2026-10-12T04:34:21.496062Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && until c=$(gh run view 38202909690 --json status,conclusion --jq '.status+" "+.conclusion' 2>/dev/null) && [ "${c%% *}" = completed ]; do sleep 30; done; echo "$c"; gh run view 38202909690 --log 2>/dev/null | grep -E "Family-size|TypeAdapter.write|REGRESSION|FAIL|passed|failed" | head -20 + at: 2026-10-12T04:34:30.659409Z + classified: other + - cmd: until grep -q "only-new touching local" /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/beq0eznrk.output 2>/dev/null || ! pgrep -f "prism.* index ." >/dev/null; do sleep 5; done; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/beq0eznrk.output + at: 2026-10-12T04:34:30.731838Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go test ./... 2>&1 | grep -v "^ok\|no test files" | tail -20; echo EXIT ${PIPESTATUS[0]} + at: 2026-10-12T04:35:00.781731Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go test ./... > /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/grove-test.log 2>&1; echo exit=$?; grep -c "^ok" /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/grove-test.log; grep -E "^(FAIL|---)" /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/grove-test.log | head + at: 2026-10-12T04:35:05.157913Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12 && grep -c resolved= driver.log; tail -2 driver.log + at: 2026-10-12T04:35:07.892315Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && awk 'NR>=368' js_ts.go | grep -n "function \|const .* = (\|out\.\|payload\|calls.push\|JSON.stringify" | head -60 + at: 2026-10-12T04:35:11.45068Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/beq0eznrk.output; S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; grep -h "go/types declared\|took" $S/cmp/graf-new.log | head -5; sqlite3 $S/cmp/graf-new/.grove/grove.db "select value from meta where key='index-native'" | tr ',' '\n' | grep -i "go\b\|go:" | head + at: 2026-10-12T04:35:15.879792Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/graf-new/.grove/grove.db "attach '$S/cmp/graf-base/.grove/grove.db' as b; + create temp table ne as select * from edges where id not in (select id from b.edges); + select 'contains to-local', count(*) from ne where edge_type='contains' and to_node in (select id from symbols where modifiers like '%compiler-declared%'); + select 'contains from-local', count(*) from ne where edge_type='contains' and from_node in (select id from symbols where modifiers like '%compiler-declared%'); + select 'contains neither', count(*) from ne where edge_type='contains' and from_node not in (select id from symbols where modifiers like '%compiler-declared%') and to_node not in (select id from symbols where modifiers like '%compiler-declared%'); + select from_node, count(*) c from ne where edge_type='contains' group by from_node order by c desc limit 8;" + at: 2026-10-12T04:35:25.576562Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && prism search ParentSymbol EdgeContains --scope text --format text 2>/dev/null | grep -n "graph/" | head -30 + at: 2026-10-12T04:35:35.200845Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "EdgeContains" *.go | grep -v _test | head -20 + at: 2026-10-12T04:35:37.28776Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && sed -n 1580,1665p edges.go + at: 2026-10-12T04:35:39.127748Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "^func namedSymbols" -A25 *.go + at: 2026-10-12T04:35:46.395729Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && grep -n '^ "slices"' internal/graph/edges.go; python3 - <<'EOF' + p='internal/graph/edges.go'; s=open(p).read() + old=''' // Go receiver methods attach to their type across files: + // `func (s *T) M()` may live in any file of T's package. + // Same directory ≈ same package (Go enforces one package + // per directory). + sameGoPackage := symbol.Language == "go" && parent.Language == "go" && + path.Dir(parent.FilePath) == path.Dir(symbol.FilePath)''' + new=''' // Go receiver methods attach to their type across files: + // `func (s *T) M()` may live in any file of T's package. + // Same directory ≈ same package (Go enforces one package + // per directory). Only receiver methods: a field or an + // interface method ("declaration") sits inside its type, and + // function-local types reuse names across a package (grafana + // pkg/api: one local testCase per test, each collecting every + // other one's fields, 2026-10-12). + sameGoPackage := symbol.Language == "go" && parent.Language == "go" && + symbol.Kind == core.KindMethod && !slices.Contains(symbol.Annotations, "declaration") && + path.Dir(parent.FilePath) == path.Dir(symbol.FilePath)''' + assert s.count(old)==1; open(p,'w').write(s.replace(old,new)) + EOF + go build ./... && go test ./internal/graph/ 2>&1 | tail -3 + at: 2026-10-12T04:36:10.887786Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/graf-base/.grove/grove.db "attach '$S/cmp/graf-new/.grove/grove.db' as n; select from_node, to_node, source, reason from edges where edge_type='calls' and id not in (select id from n.edges);" + at: 2026-10-12T04:36:15.285984Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/prism && GOWORK=$S/ws/go.work go build -o $S/bin/prism-godecl ./cmd/prism && rm -rf $S/cmp/graf-new/.grove && cd $S/cmp/graf-new && /usr/bin/time -p $S/bin/prism-godecl index . > $S/cmp/graf-new.log 2>&1; grep real $S/cmp/graf-new.log; $S/cmp/edgediff.sh $S/cmp/graf-base/.grove/grove.db $S/cmp/graf-new/.grove/grove.db | grep "only-\|compiler" + at: 2026-10-12T04:36:25.607277Z + classified: build + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/byw54ve0t.output; grep -c resolved= /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/driver.log + at: 2026-10-12T04:36:29.621284Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && awk 'NR>=368' js_ts.go | sed -n 267,360p + at: 2026-10-12T04:36:32.76485Z + classified: other + - cmd: cd ~/ci-corpus/typeorm && sqlite3 .grove/grove.db "select kind,name,qualified_name,parent_symbol,signature,modifiers,annotations from symbols where file_path='src/data-source/DataSource.ts' and (name in ('constructor','driver','isInitialized','manager') or kind='constructor') limit 8"; sqlite3 .grove/grove.db "select kind, count(*) from symbols where language='typescript' group by kind" + at: 2026-10-12T04:36:43.465361Z + classified: other + - cmd: until grep -q "only-new\|only-base\|Error\|error" /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/byij10kwt.output 2>/dev/null && ! pgrep -f "prism-godecl index" >/dev/null; do sleep 5; done; sleep 2; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/byij10kwt.output + at: 2026-10-12T04:37:26.912611Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/graf-base/.grove/grove.db "attach '$S/cmp/graf-new/.grove/grove.db' as n; select e.from_node, e.to_node, s.kind, s.annotations from edges e join symbols s on s.id=e.to_node where e.edge_type='contains' and e.id not in (select id from n.edges);" | head -20 + at: 2026-10-12T04:37:33.055129Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/graf-new/.grove/grove.db "attach '$S/cmp/graf-base/.grove/grove.db' as b; select edge_type, source, from_node, to_node from edges where edge_type in ('extends','implements','overrides') and id not in (select id from b.edges) order by edge_type limit 14;" + at: 2026-10-12T04:37:38.647612Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && python3 harness/scoring/ci_invariants.py --help 2>&1 | head -30 + at: 2026-10-12T04:37:49.411217Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/astkit && go build -o $S/bin/decoy ./cmd/decoy && cd /Users/tapabratapal/Projects/provasign/research && git checkout -q ci/family-size-invariant 2>/dev/null; git branch --show-current; python3 harness/scoring/ci_invariants.py --corpus-root ~/ci-corpus --prism $S/bin/prism-godecl --decoy-injector $S/bin/decoy > $S/gate-godecl.log 2>&1; echo exit=$?; tail -40 $S/gate-godecl.log + at: 2026-10-12T04:37:53.767991Z + classified: build + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "func Test.*Contain\|buildContains(" *_test.go | head + at: 2026-10-12T04:37:57.68083Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && sed -n 160,215p changeimpact_boundary_test.go + at: 2026-10-12T04:37:59.826387Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && python3 - <<'EOF' + p='changeimpact_boundary_test.go'; s=open(p).read() + anchor='''// TS class-body fields (astkit emits no KindField for TS) must be scanned from''' + new='''// Only receiver methods attach across files. Fields sit inside their own + // struct: build-tag variants (syslog.go / syslog_windows.go) and + // function-local types reuse a name across a package, and each copy took the + // other's fields (grafana, 2026-10-12). + func TestGoFieldsContainOnlyInTheirOwnFile(t *testing.T) { + g := New() + g.Replace([]core.SymbolRecord{ + {ID: "log/syslog.go::Handler@a", FilePath: "log/syslog.go", Language: "go", Kind: core.KindStruct, + Name: "Handler", QualifiedName: "Handler", Span: core.LineRange{Start: 1, End: 3}}, + {ID: "log/syslog.go::Handler.Tag@a", FilePath: "log/syslog.go", Language: "go", Kind: core.KindField, + Name: "Tag", QualifiedName: "Handler.Tag", ParentSymbol: "Handler", Span: core.LineRange{Start: 2, End: 2}}, + {ID: "log/syslog_windows.go::Handler@b", FilePath: "log/syslog_windows.go", Language: "go", Kind: core.KindStruct, + Name: "Handler", QualifiedName: "Handler", Span: core.LineRange{Start: 1, End: 3}}, + {ID: "log/syslog_windows.go::Handler.logger@b", FilePath: "log/syslog_windows.go", Language: "go", Kind: core.KindField, + Name: "logger", QualifiedName: "Handler.logger", ParentSymbol: "Handler", Span: core.LineRange{Start: 2, End: 2}}, + {ID: "log/handler.go::Handler.Close@c", FilePath: "log/handler.go", Language: "go", Kind: core.KindMethod, + Name: "Close", QualifiedName: "Handler.Close", ParentSymbol: "Handler", Span: core.LineRange{Start: 1, End: 1}}, + }, 3) + if !hasEdge(g, core.EdgeContains, "log/syslog.go::Handler@a", "log/syslog.go::Handler.Tag@a") || + !hasEdge(g, core.EdgeContains, "log/syslog_windows.go::Handler@b", "log/syslog_windows.go::Handler.logger@b") { + t.Fatal("each Handler must contain its own field") + } + if hasEdge(g, core.EdgeContains, "log/syslog_windows.go::Handler@b", "log/syslog.go::Handler.Tag@a") || + hasEdge(g, core.EdgeContains, "log/syslog.go::Handler@a", "log/syslog_windows.go::Handler.logger@b") { + t.Fatal("a field attached to the other file's same-named type") + } + if !hasEdge(g, core.EdgeContains, "log/syslog.go::Handler@a", "log/handler.go::Handler.Close@c") { + t.Fatal("a receiver method must still attach across files") + } + } + + ''' + assert s.count(anchor)==1; open(p,'w').write(s.replace(anchor,new+anchor)) + EOF + cd /Users/tapabratapal/Projects/provasign/grove && go test ./internal/graph/ -run 'TestGoFieldsContain|TestGoCrossFile' -v 2>&1 | tail -6; git stash -q && go test ./internal/graph/ -run TestGoFieldsContain 2>&1 | tail -3; git stash pop -q && git status --short + at: 2026-10-12T04:38:13.957304Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && cp internal/graph/edges.go /tmp/edges.go.keep && git show HEAD:internal/graph/edges.go > internal/graph/edges.go && go test ./internal/graph/ -run TestGoFieldsContain 2>&1 | tail -3; cp /tmp/edges.go.keep internal/graph/edges.go && go test ./internal/graph/ -run TestGoFieldsContain 2>&1 | tail -1; rm /tmp/edges.go.keep + at: 2026-10-12T04:38:19.909333Z + classified: test + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && gofmt -l internal && git add internal/graph/changeimpact_boundary_test.go internal/graph/edges.go internal/native/go.go internal/native/javac.go internal/native/javacdecls_test.go internal/native/native_test.go internal/parser/languages.go internal/native/go_localdecls.go internal/native/go_localdecls_test.go && git commit -q -F - <<'EOF' + go: go/types declarations the parser misses are compiler-declared symbols + + Same as javac (4d41fcd0): the compiler's declarations are the universe. + go/types attributes every type declared inside a function body, with its + fields and interface methods; the parser indexes none of them (grafana: 499 + local types, 1642 fields; gin: 31 types, 33 fields). + + - goLocalDecls collects them from info.Defs in the per-package type check, + named after their function the way astkit names items in a Rust function + body (Repo.Clone.opts, parent Clone; Repo.Clone.opts.depth, parent opts). + Embedded fields stay out, as for parsed structs. + - compilerDeclaredSymbols is now compilerDeclaredSymbolsFor(language), shared + with Java; the decl type is compilerDecl. + - Records carry modifiers compiler-declared + local; the name-keyed Go indexes + skip them, so a stored local `config` never shadows the package's `config` + on an incremental run, and goResolveType no longer credits a local type's + uses to a same-named package-level type. Uses inside the function land on + the local declaration. + - graph: Go children attach across files only when they are receiver methods. + A field or interface method sits inside its own type; with the cross-file + rule, grafana pkg/api's one-local-testCase-per-test collected every other + testCase's fields (10173 contains edges for 2073 symbols), and build-tag + variants (syslog.go / syslog_windows.go) took each other's fields (17 wrong + edges, now gone). + - ExtractorVersion 2026-10-12.2. + + grafana full index: +2073 symbols, +2073 contains, +596 uses-type, +129 + heuristic extends/implements/overrides on the local types, -17 wrong + contains, -8 name-guessed TS calls (more same-named candidates in the shared + lowercase name index pushed them over the ambiguity cap; all 8 were wrong, + e.g. Array.filter -> ScopedEventBus.filter). gin: +64 symbols, only additions. + + Co-Authored-By: Claude Opus 5.5 + Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX + EOF + git log --oneline -1 + at: 2026-10-12T04:38:30.397053Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && awk 'NR>=368' js_ts.go | sed -n 118,134p; echo ...; awk 'NR>=368' js_ts.go | sed -n 483,610p + at: 2026-10-12T04:38:54.291622Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='javac.go'; s=open(p).read() + old=''' // Set by in-process analyzers only (Go): the parser-convention signature + // when the declaration's first source line is not one, and modifiers and + // annotations beyond "compiler-declared". + Signature string `json:"-"` + Modifiers []string `json:"-"` + Annotations []string `json:"-"`''' + new=''' // Optional (Go, TypeScript): the parser-convention signature when the + // declaration's first source line is not one, and modifiers and + // annotations beyond "compiler-declared". + Signature string `json:"sig,omitempty"` + Modifiers []string `json:"mods,omitempty"` + Annotations []string `json:"ann,omitempty"`''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' case "class": + kind = core.KindClass + case "struct":''' + new=''' case "class": + kind = core.KindClass + case "function": + kind = core.KindFunction + case "struct":''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' if strings.HasPrefix(d.Name, ", as javac's), declarations nested in + // function bodies, and the bodyless members of an ambient `declare class`. + // typeorm (2026-10-12): `new (class implements ContainerInterface { get() })()` + // left ContainerInterface.get's one implementation out of every index. + // Overload signatures and object-literal methods are skipped, as the parser + // skips them. + function collectDecls(sf) { + const file = rel(sf.fileName); + const pos = p => sf.getLineAndCharacterOfPosition(p); + const line = p => pos(p).line + 1; + const ident = n => n && (ts.isIdentifier(n) || ts.isPrivateIdentifier(n)) ? n.text : ''; + const overload = (n, siblings) => !n.body && (siblings || []).some(m => m !== n && m.kind === n.kind && m.body && + (ts.isConstructorDeclaration(n) || ident(m.name) === ident(n.name))); + const join = (scope, name) => scope ? scope + '.' + name : name; + function emit(n, kind, name, scope, parent, local, extra) { + const d = {f: file, k: kind, n: name, q: join(scope, name), p: parent, s: line(n.getStart(sf)), e: line(n.end)}; + if (local) d.mods = ['local']; + decls.push(Object.assign(d, extra || {})); + } + function heritage(n) { + return (n.heritageClauses || []).map(h => (h.token === ts.SyntaxKind.ExtendsKeyword ? 'extends ' : 'implements ') + + h.types.map(t => t.expression.getText(sf)).join(', ')).join(' '); + } + function classLike(n, scope, parent, local) { + let name = ident(n.name), extra; + if (!name) { + const at = pos(n.getStart(sf)); + name = ''; + extra = {mods: local ? ['local', 'anonymous'] : ['anonymous']}; + } + const h = heritage(n); + extra = Object.assign(extra || {}, {sig: 'class ' + name + (h ? ' ' + h : '')}); + emit(n, 'class', name, scope, parent, local, extra); + if (extra.mods && !local) delete extra.mods; + const q = join(scope, name); + for (const m of n.members) { + if ((ts.isMethodDeclaration(m) || ts.isConstructorDeclaration(m)) && overload(m, n.members)) continue; + let mname = '', kind = 'method'; + if (ts.isConstructorDeclaration(m)) { mname = 'constructor'; kind = 'constructor'; } + else if (ts.isMethodDeclaration(m) || ts.isGetAccessor(m) || ts.isSetAccessor(m)) mname = ident(m.name); + else if (ts.isPropertyDeclaration(m)) { mname = ident(m.name); kind = 'field'; } + if (!mname) { walk(m, q, name, local); continue; } + emit(m, kind, mname, q, name, local); + walk(m, join(q, mname), mname, local || !!m.body); + } + } + function walk(n, scope, parent, local) { + ts.forEachChild(n, c => { + if (ts.isClassDeclaration(c) || ts.isClassExpression(c)) return classLike(c, scope, parent, local); + if (ts.isInterfaceDeclaration(c)) { + emit(c, 'interface', c.name.text, scope, parent, local); + const q = join(scope, c.name.text); + for (const m of c.members) { + const mname = ident(m.name); + if (!mname) continue; + if (ts.isMethodSignature(m)) emit(m, 'method', mname, q, c.name.text, local, {ann: ['declaration']}); + else if (ts.isPropertySignature(m)) emit(m, 'field', mname, q, c.name.text, local); + } + return; + } + if (ts.isEnumDeclaration(c)) return emit(c, 'enum', c.name.text, scope, parent, local); + if (ts.isTypeAliasDeclaration(c)) return emit(c, 'type', c.name.text, scope, parent, local); + if (ts.isFunctionDeclaration(c) && c.name) { + if (overload(c, c.parent.statements)) return; + emit(c, 'function', c.name.text, scope, parent, local); + return walk(c, join(scope, c.name.text), c.name.text, local || !!c.body); + } + if (ts.isModuleDeclaration(c) && ts.isIdentifier(c.name)) return walk(c, join(scope, c.name.text), c.name.text, local); + if (ts.isVariableDeclaration(c) && ts.isIdentifier(c.name) && c.initializer && + (ts.isArrowFunction(c.initializer) || ts.isFunctionExpression(c.initializer))) { + return walk(c, join(scope, c.name.text), c.name.text, true); + } + if (ts.isFunctionLike(c) && c.body) return walk(c, scope, parent, true); + walk(c, scope, parent, local); + }); + } + walk(sf, '', '', false); + } + ''' + assert s.count(anchor)==1; s=s.replace(anchor, collector+anchor) + + # 3. call it next to visit() in both loops + old=''' loadedFiles.add(path.resolve(sf.fileName)); + visit(checker, parsed.options, host, sf, sf, []);''' + new=''' loadedFiles.add(path.resolve(sf.fileName)); + visit(checker, parsed.options, host, sf, sf, []); + collectDecls(sf);''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' inferredFiles++; + visit(checker, options, host, sf, sf, []);''' + new=''' inferredFiles++; + visit(checker, options, host, sf, sf, []); + collectDecls(sf);''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' configErrors, edges, calls, types, members}; + }''' + new=''' configErrors, edges, calls, types, members, decls}; + }''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + grep -c "collectDecls" js_ts.go; grep -n '`' js_ts.go | sed -n 1,5p | cut -c1-80 + at: 2026-10-12T04:39:48.44319Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='js_ts.go'; s=open(p).read() + i=s.index('// collectDecls reports'); j=s.index('function collectDecls(sf)') + block=s[i:j] + new=block.replace('`','\'') + s=s[:i]+new+s[j:] + open(p,'w').write(s) + EOF + go build ./ && go vet ./ && echo ok + at: 2026-10-12T04:39:53.733541Z + classified: lint + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='js_ts.go'; s=open(p).read() + old=""" emit(n, 'class', name, scope, parent, local, extra); + if (extra.mods && !local) delete extra.mods; + """ + new=""" emit(n, 'class', name, scope, parent, local, extra); + """ + assert s.count(old)==1; s=s.replace(old,new) + old=''' Write bool `json:"write"` + } `json:"members"` + }''' + new=''' Write bool `json:"write"` + } `json:"members"` + Decls []compilerDecl `json:"decls"` + }''' + assert s.count(old)==1; s=s.replace(old,new) + old=''' fileScope := fileSet(req.Files) + symbols := newSymbolLocator(req.Symbols, map[string]bool{"javascript": true, "typescript": true, "tsx": true})''' + new=''' fileScope := fileSet(req.Files) + // The compiler's declarations the parser lacks become compiler-declared + // symbols (as javac's and go/types'), and calls the checker resolved to + // them land on them. + declared := tsCompilerDeclaredSymbols(req, payload.Decls) + located := req.Symbols + if len(declared) > 0 { + located = append(append(make([]core.SymbolRecord, 0, len(req.Symbols)+len(declared)), req.Symbols...), declared...) + } + symbols := newSymbolLocator(located, map[string]bool{"javascript": true, "typescript": true, "tsx": true})''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + grep -n "return Result{" js_ts.go | head; grep -n "^func (jsTSAnalyzer) Analyze" js_ts.go + at: 2026-10-12T04:40:02.591262Z + classified: build + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && awk 'NR>=295 && NR<=370' js_ts.go + at: 2026-10-12T04:40:04.699483Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='js_ts.go'; s=open(p).read() + old=''' if workerNote != "" { + res.Diagnostics = append(res.Diagnostics, workerNote) + } else if req.Resident''' + new=''' if len(declared) > 0 { + res.Symbols = declared + files := map[string]bool{} + for _, d := range declared { + files[d.FilePath] = true + } + res.Diagnostics = append(res.Diagnostics, "typescript declared "+itoa(len(declared))+" symbol(s) in "+itoa(len(files))+" file(s) the parser did not index; added as compiler-declared symbols") + } + if workerNote != "" { + res.Diagnostics = append(res.Diagnostics, workerNote) + } else if req.Resident''' + assert s.count(old)==1; s=s.replace(old,new) + old='''// tsChangedFiles returns the changed JS/TS files of an incremental run, or nil''' + new='''// tsCompilerDeclaredSymbols turns the resolver's decls into compiler-declared + // symbols, each in the language the parser gave its file (a .js file's + // symbols are javascript, a .tsx file's tsx). + func tsCompilerDeclaredSymbols(req Request, decls []compilerDecl) []core.SymbolRecord { + if len(decls) == 0 { + return nil + } + langOf := map[string]string{} + for _, s := range req.Symbols { + switch s.Language { + case "javascript", "typescript", "tsx": + if _, ok := langOf[s.FilePath]; !ok { + langOf[s.FilePath] = s.Language + } + } + } + byLang := map[string][]compilerDecl{} + for _, d := range decls { + if lang := langOf[d.File]; lang != "" { + byLang[lang] = append(byLang[lang], d) + } + } + var out []core.SymbolRecord + for _, lang := range []string{"javascript", "tsx", "typescript"} { + out = append(out, compilerDeclaredSymbolsFor(req, lang, byLang[lang])...) + } + sort.Slice(out, func(i, j int) bool { + if out[i].FilePath != out[j].FilePath { + return out[i].FilePath < out[j].FilePath + } + if out[i].Span.Start != out[j].Span.Start { + return out[i].Span.Start < out[j].Span.Start + } + return out[i].QualifiedName < out[j].QualifiedName + }) + return out + } + + // tsChangedFiles returns the changed JS/TS files of an incremental run, or nil''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + grep -n '^ "sort"' js_ts.go || echo NEED_SORT; go build ./ 2>&1 | head + at: 2026-10-12T04:40:13.637229Z + classified: build + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/byw54ve0t.output + at: 2026-10-12T04:40:16.907376Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go build ./... && go vet ./internal/native/ && echo ok + at: 2026-10-12T04:40:57.538576Z + classified: lint + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go test ./internal/native/ 2>&1 | tail -3 + at: 2026-10-12T04:41:19.364411Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/prism && GOWORK=$S/ws/go.work go build -o $S/bin/prism-decl ./cmd/prism && for v in base new; do rsync -a --exclude .grove --exclude node_modules ~/ci-corpus/typeorm/ $S/cmp/torm-$v/ && mkdir -p $S/cmp/torm-$v/node_modules && ln -sfn $S/tscensus/node_modules/typescript $S/cmp/torm-$v/node_modules/typescript; done; ls -la $S/cmp/torm-new/node_modules/ + at: 2026-10-12T04:41:29.998907Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-base && /usr/bin/time -p prism index . > $S/cmp/torm-base.log 2>&1; cd $S/cmp/torm-new && /usr/bin/time -p $S/bin/prism-decl index . > $S/cmp/torm-new.log 2>&1; grep real $S/cmp/torm-*.log; for v in base new; do sqlite3 $S/cmp/torm-$v/.grove/grove.db "select value from meta where key='index-native'" | tr ',' '\n' | grep -i "typescript\|js-ts" | head -4; done; $S/cmp/edgediff.sh $S/cmp/torm-base/.grove/grove.db $S/cmp/torm-new/.grove/grove.db | grep "only-\|compiler" + at: 2026-10-12T04:41:57.243143Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/torm-new/.grove/grove.db "attach '$S/cmp/torm-base/.grove/grove.db' as b; + create temp table ne as select * from edges where id not in (select id from b.edges); + create temp table lost as select * from b.edges where id not in (select id from main.edges); + create temp table cd as select id from symbols where modifiers like '%compiler-declared%'; + select 'new calls to-declared', count(*) from ne where edge_type='calls' and to_node in (select id from cd); + select 'new calls from-declared', count(*) from ne where edge_type='calls' and from_node in (select id from cd); + select 'new calls neither', count(*) from ne where edge_type='calls' and to_node not in (select id from cd) and from_node not in (select id from cd); + select 'lost calls from top-level', count(*) from lost where edge_type='calls' and from_node like '%%'; + select 'lost calls other', count(*) from lost where edge_type='calls' and from_node not like '%%'; + select ' ', from_node, to_node, source from lost where edge_type='calls' and from_node not like '%%' limit 6; + select 'new calls neither sample', from_node, to_node, source from ne where edge_type='calls' and to_node not in (select id from cd) and from_node not in (select id from cd) limit 6;" + at: 2026-10-12T04:42:09.308129Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; sqlite3 $S/cmp/torm-new/.grove/grove.db "attach '$S/cmp/torm-base/.grove/grove.db' as b; select to_node, source from edges where edge_type='calls' and from_node like '%MongoQueryRunner.getCollection@%' and id not in (select id from b.edges); select to_node, source from edges where edge_type='calls' and from_node like '%MongoDriver.disconnect@%';"; grep -n "disconnect()" -A8 $S/cmp/torm-new/src/driver/mongodb/MongoDriver.ts | head -12 + at: 2026-10-12T04:42:16.589979Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; for i in 1 2; do for v in base new; do b=prism; [ $v = new ] && b=$S/bin/prism-decl; rm -rf $S/cmp/torm-$v/.grove; cd $S/cmp/torm-$v && /usr/bin/time -p $b index . 2>&1 >/dev/null | grep real | sed "s/^/$v /"; done; done + at: 2026-10-12T04:43:07.032073Z + classified: other + - cmd: 'S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-new && q="select name, span_start, modifiers from symbols where file_path=''src/container.ts'' and modifiers like ''%compiler%'' order by span_start"; sqlite3 .grove/grove.db "$q"; printf ''// shifted\n\n'' | cat - src/container.ts > /tmp/c.ts && mv /tmp/c.ts src/container.ts && $S/bin/prism-decl index . >/dev/null 2>&1; echo after; sqlite3 .grove/grove.db "$q"; sqlite3 .grove/grove.db "select count(*) from edges where to_node like ''src/container.ts::%get@%'' and edge_type=''calls''; select value from meta where key=''index-native''" | tr '','' ''\n'' | grep -i "declared\|scoped" ' + at: 2026-10-12T04:43:19.107351Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-new && sqlite3 .grove/grove.db "select edge_type, source, from_node, to_node from edges where (from_node like 'src/container.ts::%anonymous%' or to_node like 'src/container.ts::%anonymous%' or to_node like 'src/container.ts::ContainerInterface%' or from_node like 'src/container.ts::%.get@%') and edge_type not in ('defines')"; echo ---; $S/bin/prism-decl change-impact ContainerInterface.get 2>&1 | python3 -c " + import json,sys;d=json.load(sys.stdin);print(d.get('completeness'), d.get('familyClosed') or d.get('closed'));print([ (x.get('filePath'),x.get('qualifiedName')) for x in d.get('overrides',[])+d.get('implementations',[])]); print(sorted(d.keys()))" + at: 2026-10-12T04:43:26.864958Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-new && $S/bin/prism-decl change-impact ContainerInterface.get 2>&1 | python3 -c " + import json,sys;d=json.load(sys.stdin);print('family',json.dumps(d.get('family'))[:600]);print('famcomp',d.get('familyCompleteness'),'safe',d.get('safeToClaimComplete'))"; for v in base new; do echo "== $v"; sqlite3 $S/cmp/torm-$v/.grove/grove.db "select to_node, source from edges where edge_type='calls' and (from_node like 'src/globals.ts::getConnection@%' or from_node like '%RawSqlResultsToEntityTransformer.group@%') and to_node like '%get@%'"; done; grep -n "get(" $S/cmp/torm-new/src/globals.ts | head -3 + at: 2026-10-12T04:43:36.415425Z + classified: other + - cmd: tail -45 /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bef2slo87.output 2>/dev/null; tail -5 /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/gate-godecl.log + at: 2026-10-12T04:43:44.919551Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; grep -E "exit=|\[(OK|FAIL|REGRESSION|WARN)|passed|failed|Summary|SUMMARY" $S/gate-godecl.log | sort | uniq -c | sort -rn | head; grep -E "FAIL|REGRESSION|Traceback|Error" $S/gate-godecl.log | head; tail -8 $S/gate-godecl.log + at: 2026-10-12T04:43:51.380651Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && go test ./internal/native/ -run 'TestJsTSCompilerDeclared|TestJsTSResidentWorker' -v 2>&1 | tail -15 + at: 2026-10-12T04:44:13.217158Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/grove && GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test ./internal/native/ -run 'TestJsTSCompilerDeclared|TestJsTSResidentWorker' -v 2>&1 | tail -15 + at: 2026-10-12T04:44:16.751189Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && grep -rn "func linkTypeScriptForTest" -A25 *_test.go | head -32 + at: 2026-10-12T04:44:18.735699Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus node -e "console.log(require.resolve('typescript',{paths:[process.env.GROVE_TEST_TYPESCRIPT_ROOT]}))"; echo rc=$? + at: 2026-10-12T04:44:24.220704Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/grove && env | grep -i "GROVE_TEST\|NODE" ; env GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test -count=1 ./internal/native/ -run 'TestJsTSCompilerDeclared' -v 2>&1 | tail -15 + at: 2026-10-12T04:44:31.214539Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/grove && perl -pi -e 's/ return xs\.sort\(less\)/ return xs.sort((a, b) => less(a, b))/' internal/native/js_ts_decls_test.go && env GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test -count=1 ./internal/native/ 2>&1 | tail -8 + at: 2026-10-12T04:44:42.676551Z + classified: test + - cmd: 'S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/grove && perl -0pi -e ''s|// 2026-10-12.2: go/types compiler-declared symbols \(function-local types and\n// their fields and interface methods\).|// 2026-10-12.2: go/types compiler-declared symbols (function-local types and\n// their fields and interface methods) and TypeScript ones (class-expression\n// members, functions nested in function bodies, ambient class members).|'' internal/parser/languages.go && sed -n 33,40p internal/parser/languages.go && env GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test -count=1 ./... > $S/grove-test2.log 2>&1; echo exit=$?; grep -v "^ok\|no test files" $S/grove-test2.log | tail' + at: 2026-10-12T04:45:13.164928Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/eval && GOWORK=off go build ./... 2>&1 | tail -5; echo build=$?; GOWORK=off go vet ./... 2>&1 | tail -3 + at: 2026-10-12T04:45:21.239338Z + classified: lint + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && gofmt -l internal/native internal/parser; git add internal/native/js_ts.go internal/native/javac.go internal/native/js_ts_decls_test.go internal/parser/languages.go && git commit -q -F - <<'EOF' + typescript: compiler-parsed declarations the parser misses are compiler-declared symbols + + The TypeScript resolver now reports the declarations of every file it + visits (collectDecls), in Grove's naming, and the shared coverage check keeps + the ones the parser did not index: + + - class expressions and their members; an unnamed one is + like javac's, its signature carries its heritage + ("class implements Container"). typeorm + src/container.ts: ContainerInterface.get's only implementation lives in + `new (class implements ContainerInterface { get() {} })()`; change_impact + now lists it (family closed, safe to claim complete) where it had none. + - functions, classes, interfaces, enums and type aliases declared inside + function bodies (modifier "local"), named after their scope (sort.less). + - the bodyless members of an ambient `declare class` (typeorm's vendored + mongodb typings: 585 methods/constructors/accessors). + - overload signatures and object-literal methods stay out, as the parser + leaves them out. + + The declared symbols join the call/type/member locator, so the checker's + resolved references land on them: typeorm MongoQueryRunner.getCollection now + calls MongoClient.db and Db.collection (before: ChangeStreamNameSpace.db, the + nearest same-named symbol), MongoDriver.disconnect calls MongoClient.close + (before: DataSource.close), and calls inside nested functions are theirs, not + the file's . + + typeorm full index with typescript resolvable: +614 symbols, +1744 calls + (1705 to declared symbols, 39 from nested functions), -61 calls (35 moved off + , 26 retargeted from wrong same-named symbols); cold index time + within run-to-run noise (10.1-11.3s both builds). Incremental edit of + container.ts re-declares the three symbols at their new lines, no stale rows. + + compilerDecl's signature, modifiers and annotations are now JSON fields + (sig/mods/ann) so a resolver script can supply them; "function" maps to + KindFunction; an anonymous class keeps a supplied signature. + + Co-Authored-By: Claude Opus 5.5 + Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX + EOF + git log --oneline -3 + at: 2026-10-12T04:45:32.333265Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && gofmt -w internal/native/js_ts_decls_test.go && git add internal/native/js_ts_decls_test.go && git commit -q --amend --no-edit && gofmt -l internal/native; git status --short + at: 2026-10-12T04:45:36.129446Z + classified: other + - cmd: |- + S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; mkdir -p $S/pycensus && cat > $S/pycensus/census.py <<'EOF' + import ast, sqlite3, sys, os, collections + root = sys.argv[1] + db = sqlite3.connect(os.path.join(root, '.grove/grove.db')) + syms = collections.defaultdict(list) + for f, n, s, e in db.execute("select file_path,name,span_start,span_end from symbols where language='python'"): + syms[f].append((n, s, e or s)) + total, missing, ex = collections.Counter(), collections.Counter(), collections.defaultdict(list) + for rel in list(syms): + try: + tree = ast.parse(open(os.path.join(root, rel), encoding='utf-8', errors='replace').read()) + except Exception: + continue + def visit(node, ctx): + for ch in ast.iter_child_nodes(node): + cat = None + if isinstance(ch, ast.ClassDef): cat = 'class' + elif isinstance(ch, (ast.FunctionDef, ast.AsyncFunctionDef)): cat = 'method' if ctx == 'class' else ('nestedfunc' if ctx == 'func' else 'func') + elif isinstance(ch, (ast.Assign, ast.AnnAssign)) and ctx in ('class', 'module'): + targets = ch.targets if isinstance(ch, ast.Assign) else [ch.target] + for t in targets: + if isinstance(t, ast.Name): + c = ctx + 'attr'; total[c] += 1 + if not any(n == t.id and not (s > ch.end_lineno or e < ch.lineno) for n, s, e in syms[rel]): + missing[c] += 1; ex[c].append(f'{rel}:{ch.lineno} {t.id}') + if cat: + c = ('local' if ctx == 'func' and cat == 'class' else '') + cat + total[c] += 1 + if not any(n == ch.name and not (s > ch.end_lineno or e < ch.lineno) for n, s, e in syms[rel]): + missing[c] += 1; ex[c].append(f'{rel}:{ch.lineno} {ch.name}') + visit(ch, 'class' if cat in ('class',) else 'func') + else: + visit(ch, ctx if not isinstance(ch, (ast.Lambda,)) else 'func') + visit(tree, 'module') + for c in sorted(total): + print(f'{c:14} total={total[c]:7} missing={missing[c]:6}') + for x in ex[c][:3]: print(' ', x) + EOF + python3 $S/pycensus/census.py ~/ci-corpus/django + at: 2026-10-12T04:45:50.656619Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/prism && GOWORK=$S/ws/go.work go build -o $S/bin/prism-decl ./cmd/prism && cd /Users/tapabratapal/Projects/provasign/research && python3 harness/scoring/ci_invariants.py --corpus-root ~/ci-corpus --prism $S/bin/prism-decl --decoy-injector $S/bin/decoy > $S/gate-decl.log 2>&1; echo exit=$?; grep -E "FAIL|REGRESSION|Traceback" $S/gate-decl.log | head; tail -3 $S/gate-decl.log + at: 2026-10-12T04:46:05.900072Z + classified: build + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && tail -3 bench-v0879-java13-2026-10-12/driver.log; python3 - <<'EOF' + import json,glob + old={} + for p in glob.glob('bench-v0877-issue*/*.json'): + try:d=json.load(open(p)) + except:continue + if isinstance(d,dict) and 'resolved' in d: old[(d['task'],d['arm'])]=(d['resolved'],d.get('cost_usd') or 0) + new={} + for p in glob.glob('bench-v0879-java13-2026-10-12/*.claude-*.json'): + d=json.load(open(p)); tu=d.get('tool_usage',{}) + new[(d['task'],d['arm'])]=(d['resolved'],d['cost_usd'],tu.get('tool_calls'),tu.get('prism_ops'),d['score'].get('f2p_ok'),d['score'].get('p2p_ok')) + ids=json.load(open('java13-resolved-manifest.json')) + f=lambda r: '—' if r is None else ('PASS' if r[0] else 'FAIL') + tn=tp=cn=cp=0 + for i in ids: + n,p=new.get((i,'native')),new.get((i,'prism_init')) + on,op=old.get((i,'native')),old.get((i,'prism_init')) + c='' + if n and p: + c=f"${n[1]:.2f}/{p[1]:.2f} ({p[1]/n[1]:.2f}x) calls {n[2]}/{p[2]} prism={p[3]}"; tn+=n[0];tp+=p[0];cn+=n[1];cp+=p[1] + print(f"{i.split('__')[-2]+' '+i.split('__')[-1]:26} N={f(n):4} P={f(p):4} {c} | v0877 N={f(on)} P={f(op)}") + print('totals', tn, tp, round(cn,2), round(cp,2), round(cp/cn,2) if cn else None) + EOF + at: 2026-10-12T04:46:12.444037Z + classified: other + - cmd: "cd /Users/tapabratapal/Projects/provasign/grove && git push -q -u origin feat/go-compiler-declared 2>&1 | tail -2; gh pr create --draft --base main --head feat/go-compiler-declared --title \"Go and TypeScript: compiler declarations the parser misses become compiler-declared symbols\" --body \"$(cat <<'EOF'\nFollows #20 (javac compiler-declared symbols) for the two other analyzers that run a real compiler front end.\n\n## Go (go/types)\n- Types declared inside function bodies, with their named fields and interface methods, were in no index. go/types attributed every one (grafana: 499 local types, 1642 fields; gin: 31 types, 33 fields).\n- They become compiler-declared symbols, named after their function the way astkit names items in a Rust function body: `Repo.Clone.opts`, with parent `Clone`. Embedded fields stay out, as they do for parsed structs.\n- Local symbols carry the `local` modifier. The name-keyed Go indexes skip them, so a stored local `config` never shadows the package's `config` on an incremental run.\n- `goResolveType` no longer credits a local type's uses to a package-level type with the same name.\n- graph `buildContains`: a Go child attaches across files only when it is a receiver method. Two kinds of wrong contains edges came from the old rule:\n - grafana `pkg/api` has one local `testCase` per test, and each collected every other one's fields.\n - Build-tag variants (`syslog.go` / `syslog_windows.go`) took each other's fields. These 17 edges existed before this PR and are now gone.\n\n## TypeScript (tsc)\nThe resolver script reports each visited file's declarations (`collectDecls`). The shared coverage check keeps the ones the parser lacks:\n- Class expressions and their members. An unnamed one is ``, as javac's, and its signature carries its heritage. In typeorm, `ContainerInterface.get`'s only implementation lives in `new (class implements ContainerInterface {...})()`. `change_impact` now lists it (family closed); before, it had no implementation.\n- Functions, classes, interfaces, enums and type aliases nested in function bodies.\n- Bodyless members of an ambient `declare class` (typeorm's vendored mongodb typings: 585).\n- Overload signatures and object-literal methods stay out.\n\nThe declared symbols join the call/type/member locator, so references the checker resolved now land on the right target:\n- `MongoQueryRunner.getCollection` now calls `MongoClient.db` / `Db.collection`. Before, it hit `ChangeStreamNameSpace.db`.\n- `MongoDriver.disconnect` now calls `MongoClient.close`. Before, it hit `DataSource.close`.\n- Calls inside nested functions are attributed to those functions instead of ``.\n\n## Measured (full cold index, v0.87.9 vs this branch)\n| corpus | symbols | edges added | edges removed | index time |\n|---|---|---|---|---|\n| gin | +64 | 159, all touching the new symbols | 0 | 1.0s both |\n| grafana | +2073 | contains 2073, uses-type 596, extends/implements/overrides 129 | 17 wrong contains; 8 name-guessed TS calls (all wrong, e.g. `Array.filter` -> `ScopedEventBus.filter`) | noise |\n| typeorm (typescript resolvable) | +614 | calls 1744 | calls 61 (35 off ``, 26 retargeted from wrong same-named symbols) | 10.1-11.3s both |\n\n## Checks\n- `go test ./...` is green, including with typescript available (`GROVE_TEST_TYPESCRIPT_ROOT`); `eval/` builds.\n- The research engine gate passed on the Go build (\"All invariants held\"). The gate on the combined build is running.\n- An incremental edit re-declares the symbols at their new lines and leaves no stale rows.\n- ExtractorVersion is `2026-10-12.2`, so existing indexes re-extract once.\n\nPython was checked and needs nothing. CPython's parser and tree-sitter agree except for 104 module-level assignments inside try/if blocks, out of ~60k declarations in django.\n\n\U0001F916 Generated with [Claude Code](https://claude.com/claude-code)\n\nhttps://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX\nEOF\n)\" 2>&1 | tail -2" + at: 2026-10-12T04:46:31.707791Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && sleep 30; until s=$(gh pr checks 23 --json name,bucket 2>/dev/null) && [ -n "$s" ] && echo "$s" | python3 -c "import json,sys;d=json.load(sys.stdin);sys.exit(0 if d and all(c['bucket']!='pending' for c in d) else 1)"; do sleep 60; done; echo "$s" | python3 -c "import json,sys;[print(c['bucket'],c['name']) for c in json.load(sys.stdin)]" + at: 2026-10-12T04:46:46.792559Z + classified: other + - cmd: |- + cd ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && python3 - <<'EOF' + p='MEMORY.md';s=open(p).read() + line='- [Go+TS compiler-declared 2026-10-12](project_go_ts_compiler_declared_2026_10_12.md) — grove draft PR #23: go/types local types + tsc class-expr/nested/ambient decls; Python needs nothing; gate green on Go build\n' + i=s.index('- [Java5 issue run') + open(p,'w').write(s[:i]+line+s[i:]) + EOF + grep -n "Go+TS\|Java5" MEMORY.md | head + at: 2026-10-12T04:46:50.230594Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-new && $S/bin/prism-decl lookup ContainerInterface.get 2>&1 | head -30 + at: 2026-10-12T04:46:57.547389Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd $S/cmp/torm-new && $S/bin/prism-decl change-impact ContainerInterface.get --format text 2>&1 | head -30; cd $S/cmp/torm-base && echo "=== base"; prism change-impact ContainerInterface.get --format text 2>&1 | head -12 + at: 2026-10-12T04:47:02.363458Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "type edgeIndex struct" -A40 edges.go | head -60; grep -n "func newEdgeIndex\|func buildEdgeIndex" edges.go + at: 2026-10-12T04:47:21.855144Z + classified: other + - cmd: 'cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && sed -n 120,175p edges.go; grep -n "idx.byName\[" edges.go localtypes.go *.go 2>/dev/null | grep -v _test | awk -F: ''{print $1}'' | sort | uniq -c' + at: 2026-10-12T04:47:24.371645Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "func buildEdges\|buildEdges(\|func (g \*Graph) Replace\|func CurrentNativeEdges\|func mergeNative\|nativeEdges" graph.go edges.go | head -20 + at: 2026-10-12T04:47:33.5958Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -rn "^func (g \*Graph) Replace\|^func CurrentNativeEdges\|^func BuildEdges\|^func buildEdges\|^func buildAllEdges" --include='*.go' . | grep -v _test + at: 2026-10-12T04:47:35.969013Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && sed -n 340,420p graph.go + at: 2026-10-12T04:47:37.931517Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && grep -n "buildCalls\|buildUsesType\|BuildEdgesWithProgress\|buildDecoratorEdges\|buildImplicitSuperCalls\|buildFrameworkEdges" incremental.go | head -20 + at: 2026-10-12T04:47:42.17489Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && awk 'NR>=75 && NR<=330' incremental.go | grep -n "return\|^func\|edges = append\|out = append" | head -40 + at: 2026-10-12T04:47:49.287173Z + classified: other + - cmd: "cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && awk 'NR>=270 && NR<=286' incremental.go; grep -n '^\t\"slices\"' graph.go incremental.go" + at: 2026-10-12T04:47:58.405139Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bzdk171qj.output | tail -5 + at: 2026-10-12T04:48:01.535957Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && python3 - <<'EOF' + p='graph.go'; s=open(p).read() + old=''' decoEdges := buildDecoratorEdges(idx, symbols, callEdges) + edges = append(edges, decoEdges...) + tick("decorators") + return edges + }''' + new=''' decoEdges := buildDecoratorEdges(idx, symbols, callEdges) + edges = append(edges, decoEdges...) + tick("decorators") + return dropGuessesIntoCompilerDeclared(symbols, edges) + } + + // dropGuessesIntoCompilerDeclared removes name-guessed reference edges + // (calls, uses-type, reads, writes) into compiler-declared symbols. Such a + // symbol exists because a compiler declared it, and the same compiler resolved + // the references to it; a guess by name only adds the unrelated callers of + // every same-named method (typeorm: nine getConnectionManager().get(...) + // callers and a Map.get became callers of the container's anonymous get, + // 2026-10-12). Structural edges (contains, extends, implements, overrides) + // come from the symbol's own declaration and stay. + func dropGuessesIntoCompilerDeclared(symbols []core.SymbolRecord, edges []core.Edge) []core.Edge { + declared := map[string]bool{} + for i := range symbols { + if slices.Contains(symbols[i].Modifiers, "compiler-declared") { + declared[symbols[i].ID] = true + } + } + if len(declared) == 0 { + return edges + } + out := edges[:0] + for _, e := range edges { + if declared[e.To] && e.Source != core.EvidenceSourceNative { + switch e.Type { + case core.EdgeCalls, core.EdgeUsesType, core.EdgeReads, core.EdgeWrites: + continue + } + } + out = append(out, e) + } + return out + }''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + p='incremental.go'; s=open(p).read() + old=''' return edges, buildDeltaMeta(symbols, metaOwners, changedFiles, nativeAnalyzedDirs) + }''' + new=''' return dropGuessesIntoCompilerDeclared(symbols, edges), buildDeltaMeta(symbols, metaOwners, changedFiles, nativeAnalyzedDirs) + }''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + grep -n '^ "slices"' graph.go || python3 - <<'EOF' + p='/Users/tapabratapal/Projects/provasign/grove/internal/graph/graph.go'; s=open(p).read() + s=s.replace('import (\n','import (\n\t"slices"\n',1); open(p,'w').write(s) + EOF + cd /Users/tapabratapal/Projects/provasign/grove && gofmt -w internal/graph/graph.go && go build ./... && go test ./internal/graph/ 2>&1 | tail -3 + at: 2026-10-12T04:48:16.144005Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/prism && GOWORK=$S/ws/go.work go build -o $S/bin/prism-decl ./cmd/prism && cd $S/cmp/torm-new && rm -rf .grove && $S/bin/prism-decl index . >/dev/null 2>&1 && $S/bin/prism-decl change-impact ContainerInterface.get --format text 2>&1 | sed -n 1,22p; $S/cmp/edgediff.sh $S/cmp/torm-base/.grove/grove.db $S/cmp/torm-new/.grove/grove.db | grep "only-" + at: 2026-10-12T04:48:36.781772Z + classified: build + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/grove && env GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test -count=1 ./... > $S/grove-test3.log 2>&1; echo tests=$?; grep -v "^ok\|no test files" $S/grove-test3.log | tail -5; cd /Users/tapabratapal/Projects/provasign/research && python3 harness/scoring/ci_invariants.py --corpus-root ~/ci-corpus --prism $S/bin/prism-decl --decoy-injector $S/bin/decoy > $S/gate-decl2.log 2>&1; echo gate=$?; grep -E "FAIL|REGRESSION|Traceback" $S/gate-decl2.log | head; tail -2 $S/gate-decl2.log + at: 2026-10-12T04:48:47.511893Z + classified: test + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/graph && cat > compilerdeclared_test.go <<'EOF' + package graph + + import ( + "testing" + + "github.com/provasign/grove/internal/core" + ) + + // A compiler-declared symbol takes references only from the compiler that + // declared it: name guesses into it are dropped, structural edges and native + // references stay (typeorm, 2026-10-12: getConnectionManager().get(...) and + // Map.get callers guessed onto the container's anonymous get). + func TestDropGuessesIntoCompilerDeclared(t *testing.T) { + symbols := []core.SymbolRecord{ + {ID: "anon.get", Modifiers: []string{"compiler-declared", "anonymous"}}, + {ID: "Reader.get"}, + } + edges := []core.Edge{ + {From: "caller", To: "anon.get", Type: core.EdgeCalls, Source: core.EvidenceSourceASTKit}, + {From: "caller", To: "anon.get", Type: core.EdgeUsesType, Source: core.EvidenceSourceHeuristic}, + {From: "caller", To: "anon.get", Type: core.EdgeCalls, Source: core.EvidenceSourceNative}, + {From: "anon", To: "anon.get", Type: core.EdgeContains, Source: core.EvidenceSourceASTKit}, + {From: "anon.get", To: "Iface.get", Type: core.EdgeOverrides, Source: core.EvidenceSourceHeuristic}, + {From: "caller", To: "Reader.get", Type: core.EdgeCalls, Source: core.EvidenceSourceASTKit}, + } + got := dropGuessesIntoCompilerDeclared(symbols, edges) + want := []string{"caller>anon.get:calls:native", "anon>anon.get:contains:astkit", "anon.get>Iface.get:overrides:heuristic", "caller>Reader.get:calls:astkit"} + if len(got) != len(want) { + t.Fatalf("got %d edges, want %d: %+v", len(got), len(want), got) + } + for i, e := range got { + if s := e.From + ">" + e.To + ":" + string(e.Type) + ":" + string(e.Source); s != want[i] { + t.Errorf("edge %d = %s, want %s", i, s, want[i]) + } + } + } + EOF + grep -n "EvidenceSourceHeuristic\|EvidenceSourceASTKit\|EvidenceSourceNative" ../core/*.go | head -4; cd .. && cd .. && go test ./internal/graph/ -run TestDropGuesses -v 2>&1 | tail -4 + at: 2026-10-12T04:48:58.597099Z + classified: test + - cmd: tail -4 /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/driver.log; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/biuoga4dn.output 2>/dev/null + at: 2026-10-12T04:49:03.048073Z + classified: other + - cmd: ps aux | grep -E "run_e2e|claude -p|docker run|mvn" | grep -v grep | awk '{print $2, $10, substr($0, index($0,$11), 120)}' | head -8; ls -t /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/ | head -3 + at: 2026-10-12T04:49:06.995886Z + classified: other + - cmd: until grep -q "^gate=" /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bjpbp004x.output 2>/dev/null; do sleep 15; done; cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bjpbp004x.output + at: 2026-10-12T04:49:12.008391Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/biuoga4dn.output + at: 2026-10-12T04:50:23.467486Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && id=$(gh run list --branch feat/go-compiler-declared -L 5 --json databaseId,name,conclusion --jq '.[]|select(.conclusion=="failure")|.databaseId' | head -1); echo run=$id; gh run view $id --log-failed 2>/dev/null | grep -E "FAIL|panic|fatal|invalid g|unsafe|--- FAIL|Error" | head -20 + at: 2026-10-12T04:50:29.178186Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && gh run view 38205158746 --log-failed 2>/dev/null | grep -A6 "TestJsTSAnalyzeCommonJSAndDynamicImports" | cut -c1-400 | head -20 + at: 2026-10-12T04:50:32.896679Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && cat > /tmp/tslen_test.go <<'EOF' + EOF + rm /tmp/tslen_test.go; cat > tslen_probe_test.go <<'EOF' + package native + + import "testing" + + func TestTSScriptLenProbe(t *testing.T) { t.Logf("tsScript=%d", len(tsScript)) } + EOF + go test -run TestTSScriptLenProbe -v . 2>&1 | grep tsScript=; rm tslen_probe_test.go; git stash -q; cat > tslen_probe_test.go <<'EOF' + package native + + import "testing" + + func TestTSScriptLenProbe(t *testing.T) { t.Logf("tsScript=%d", len(tsScript)) } + EOF + go test -run TestTSScriptLenProbe -v . 2>&1 | grep tsScript=; rm tslen_probe_test.go; git stash pop -q; git -C .. status --short | head + at: 2026-10-12T04:50:43.362412Z + classified: test + - cmd: cd /Users/tapabratapal/Projects/provasign/grove/internal/native && sed -n 65,100p tsworker.go; grep -n '"node", "-e", tsScript' *.go + at: 2026-10-12T04:51:02.917727Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bjpbp004x.output + at: 2026-10-12T04:51:06.068251Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && python3 - <<'EOF' + p='js_ts.go'; s=open(p).read() + old=''' cmd := exec.CommandContext(ctx, "node", "-e", tsScript) + cmd.Dir = dir + env := []string{"GROVE_FILES=" + string(filesJSON), "GROVE_ROOT=" + req.Root}''' + new=''' scriptEnv, err := tsScriptEnv() + if err != nil { + return Result{Diagnostics: []string{"typescript resolver script: " + err.Error()}} + } + cmd := exec.CommandContext(ctx, "node", "-e", tsScriptLoader) + cmd.Dir = dir + env := []string{scriptEnv, "GROVE_FILES=" + string(filesJSON), "GROVE_ROOT=" + req.Root}''' + assert s.count(old)==1, s.count(old); s=s.replace(old,new) + open(p,'w').write(s) + p='tsworker.go'; s=open(p).read() + old=''' cmd := exec.Command("node", "-e", tsScript) + cmd.Dir = dir + cmd.Env = appendEnv("GROVE_TS_WORKER=1") + return cmd''' + new=''' scriptEnv, err := tsScriptEnv() + if err != nil { + scriptEnv = "GROVE_TS_SCRIPT=" // the loader fails and the caller runs one-shot + } + cmd := exec.Command("node", "-e", tsScriptLoader) + cmd.Dir = dir + cmd.Env = appendEnv(scriptEnv, "GROVE_TS_WORKER=1") + return cmd''' + assert s.count(old)==1; s=s.replace(old,new) + open(p,'w').write(s) + EOF + cat > tsscript_file.go <<'EOF' + package native + + import ( + "os" + "sync" + ) + + // tsScriptLoader is what node runs with -e: it evaluates the resolver script + // from the file tsScriptEnv names. The script itself no longer fits on a + // Windows command line (32767 characters; it reached 34k with the + // compiler-declared pass, 2026-10-12: "The filename or extension is too + // long"). A direct eval runs in the -e module's scope, so require() still + // resolves typescript from node's working directory, exactly as when the + // script was the -e argument (the repo root, or the neutral directory in + // untrusted mode). + const tsScriptLoader = `eval(require('fs').readFileSync(process.env.GROVE_TS_SCRIPT, 'utf8'))` + + var tsScriptFile struct { + once sync.Once + path string + err error + } + + // tsScriptEnv writes the resolver script to a private temporary file once per + // process (a random name with owner-only permissions, never a predictable + // shared path another user could plant) and returns the GROVE_TS_SCRIPT + // variable that names it. + func tsScriptEnv() (string, error) { + tsScriptFile.once.Do(func() { + f, err := os.CreateTemp("", "grove-ts-*.js") + if err != nil { + tsScriptFile.err = err + return + } + if _, err := f.WriteString(tsScript); err != nil { + f.Close() + os.Remove(f.Name()) + tsScriptFile.err = err + return + } + if err := f.Close(); err != nil { + os.Remove(f.Name()) + tsScriptFile.err = err + return + } + tsScriptFile.path = f.Name() + }) + if tsScriptFile.err != nil { + return "", tsScriptFile.err + } + return "GROVE_TS_SCRIPT=" + tsScriptFile.path, nil + } + EOF + cd ../.. && go build ./... && go vet ./internal/native/ && echo ok + at: 2026-10-12T04:51:20.419527Z + classified: lint + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && grep -n "require.main\|__filename\|__dirname\|process.argv" js_ts.go | head; cat > tsscript_file.go <<'EOF' + package native + + import ( + "os" + "sync" + ) + + // tsScriptLoader is what node runs with -e: it evaluates the resolver script + // from the file tsScriptEnv names. The script itself no longer fits on a + // Windows command line (32767 characters; it reached 34k with the + // compiler-declared pass, 2026-10-12: "The filename or extension is too + // long"). A direct eval runs in the -e module's scope, so require() still + // resolves typescript from node's working directory, exactly as when the + // script was the -e argument (the repo root, or the neutral directory in + // untrusted mode). + const tsScriptLoader = `eval(require('fs').readFileSync(process.env.GROVE_TS_SCRIPT, 'utf8'))` + + var tsScriptFile struct { + sync.Mutex + path string + } + + // tsScriptEnv returns the GROVE_TS_SCRIPT variable naming a private temporary + // copy of the resolver script: a random name with owner-only permissions, + // never a predictable shared path another user could plant. It is written once + // per process and again if a temp cleaner removed it under a long-lived engine. + func tsScriptEnv() (string, error) { + tsScriptFile.Lock() + defer tsScriptFile.Unlock() + if tsScriptFile.path != "" { + if _, err := os.Stat(tsScriptFile.path); err == nil { + return "GROVE_TS_SCRIPT=" + tsScriptFile.path, nil + } + } + f, err := os.CreateTemp("", "grove-ts-*.js") + if err != nil { + return "", err + } + if _, err := f.WriteString(tsScript); err != nil { + f.Close() + os.Remove(f.Name()) + return "", err + } + if err := f.Close(); err != nil { + os.Remove(f.Name()) + return "", err + } + tsScriptFile.path = f.Name() + return "GROVE_TS_SCRIPT=" + tsScriptFile.path, nil + } + EOF + cd ../.. && go build ./... && S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad && env GROVE_TEST_TYPESCRIPT_ROOT=$S/tscensus go test -count=1 ./internal/native/ ./internal/index/ 2>&1 | tail -4 + at: 2026-10-12T04:51:44.097546Z + classified: test + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove/internal/native && cat > tsscript_file_test.go <<'EOF' + package native + + import ( + "os" + "strings" + "testing" + ) + + // The resolver script reaches node through a file, not argv: Windows caps a + // command line at 32767 characters and the script outgrew it (2026-10-12). + // The file is rewritten if a temp cleaner removed it. + func TestTSScriptLoadedFromPrivateFile(t *testing.T) { + if len(tsScriptLoader) > 200 { + t.Fatalf("the -e loader must stay tiny, got %d characters", len(tsScriptLoader)) + } + env, err := tsScriptEnv() + if err != nil { + t.Fatal(err) + } + path := strings.TrimPrefix(env, "GROVE_TS_SCRIPT=") + data, err := os.ReadFile(path) + if err != nil || string(data) != tsScript { + t.Fatalf("script file %s does not hold the resolver script (err %v)", path, err) + } + if info, err := os.Stat(path); err == nil && info.Mode().Perm()&0o077 != 0 && os.PathSeparator == '/' { + t.Errorf("script file is readable by others: %v", info.Mode()) + } + os.Remove(path) + env2, err := tsScriptEnv() + if err != nil { + t.Fatal(err) + } + if data, err := os.ReadFile(strings.TrimPrefix(env2, "GROVE_TS_SCRIPT=")); err != nil || string(data) != tsScript { + t.Fatalf("removed script file was not rewritten: %v", err) + } + } + EOF + cd ../.. && go test -count=1 -run TestTSScriptLoadedFromPrivateFile ./internal/native/ 2>&1 | tail -2 + at: 2026-10-12T04:51:52.952365Z + classified: test + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; cd /Users/tapabratapal/Projects/provasign/prism && GOWORK=$S/ws/go.work go build -o $S/bin/prism-decl ./cmd/prism && cd $S/cmp/torm-new && rm -rf .grove && $S/bin/prism-decl index . >/dev/null 2>&1; sqlite3 .grove/grove.db "select value from meta where key='index-native'" | tr ',' '\n' | grep -i "js-ts" | head -3; sqlite3 .grove/grove.db "select count(*) from symbols where modifiers like '%compiler-declared%'" + at: 2026-10-12T04:52:11.021109Z + classified: build + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && gofmt -l internal/graph internal/native | grep -v changeimpact_signatures_test; git add internal/graph/graph.go internal/graph/incremental.go internal/graph/compilerdeclared_test.go && git commit -q -F - <<'EOF' + graph: name guesses never target a compiler-declared symbol + + A compiler-declared symbol exists because a compiler declared it, and the + same compiler resolved the references to it. The name-guessing builders + treated it as one more candidate for every same-named call: typeorm's + change_impact ContainerInterface.get went from 2 sites (implementation + missing) to 12 (implementation found, plus nine getConnectionManager().get() + callers and a Map.get guessed onto the anonymous get). Name-guessed calls, + uses-type, reads and writes into compiler-declared symbols are dropped in + both the full and the incremental edge build; structural edges (contains, + extends, implements, overrides) and native references stay. Now 3 sites: + the declaration, the anonymous implementation, the one real caller. + + typeorm with typescript resolvable: +152 native calls into the new symbols + instead of +1744 mostly guessed ones. Research engine gate: all invariants + held (Java anonymous classes are compiler-declared too; their javac edges + carry the families). + + Co-Authored-By: Claude Opus 5.5 + Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX + EOF + git add internal/native/js_ts.go internal/native/tsworker.go internal/native/tsscript_file.go internal/native/tsscript_file_test.go && git commit -q -F - <<'EOF' + typescript: node loads the resolver script from a private file, not argv + + Windows caps a command line at 32767 characters. The resolver script was + 30k on main and 34k with the compiler-declared pass, and every TypeScript + test failed on windows-latest with "fork/exec node.exe: The filename or + extension is too long". node now runs a one-line -e loader that evals the + script from a temporary file (random name, owner-only, rewritten if a temp + cleaner removed it). A direct eval runs in the -e module's scope, so + require('typescript') resolves from node's working directory exactly as + before (the repo root, or the neutral directory in untrusted mode). + + Co-Authored-By: Claude Opus 5.5 + Claude-Session: https://claude.ai/code/session_01KXa6Cv1ZUXcdMqXcJfQFhX + EOF + git log --oneline -4 && git push -q origin feat/go-compiler-declared 2>&1 | tail -1 + at: 2026-10-12T04:52:22.779194Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && sleep 45; until s=$(gh pr checks 23 --json name,bucket 2>/dev/null) && [ -n "$s" ] && echo "$s" | python3 -c "import json,sys;d=json.load(sys.stdin);sys.exit(0 if d and all(c['bucket']!='pending' for c in d) else 1)"; do sleep 60; done; echo "$s" | python3 -c "import json,sys;[print(c['bucket'],c['name']) for c in json.load(sys.stdin)]" + at: 2026-10-12T04:52:25.83201Z + classified: other + - cmd: S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad; rm -rf $S/cmp/graf-new/.grove && cd $S/cmp/graf-new && /usr/bin/time -p $S/bin/prism-decl index . > $S/cmp/graf-new3.log 2>&1; grep real $S/cmp/graf-new3.log; $S/cmp/edgediff.sh $S/cmp/graf-base/.grove/grove.db $S/cmp/graf-new/.grove/grove.db | grep "only-\|compiler"; tail -3 /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/driver.log + at: 2026-10-12T04:53:24.160816Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/grove && gh pr view 23 --json body --jq .body > /tmp/pr23.md && python3 - <<'EOF' + p='/tmp/pr23.md'; s=open(p).read() + i=s.index('## Measured'); j=s.index('## Checks') + new='''## Name guesses never target a compiler-declared symbol (graph) + A compiler-declared symbol exists because a compiler declared it, and that compiler also resolved the references to it. Before this rule, grove's name-guessing pass treated each new symbol as one more candidate for every same-named call. With the rule, typeorm `change_impact ContainerInterface.get` returns 3 sites: the declaration, the anonymous implementation, and its one real caller. Main returns 2 sites, with no implementation. Without the rule it returned 12: the same 3 plus nine `getConnectionManager().get()` callers and a `Map.get`. + + Name-guessed calls, uses-type, reads and writes into compiler-declared symbols are dropped in both the full and the incremental build. Structural edges and native references stay. + + ## Windows: the resolver script is loaded from a file + The TS script was 30k characters on main and 34k with this change. That is over Windows' 32767-character command-line limit, so every TS test failed on windows-latest. node now runs a one-line `-e` loader that evals the script from a private temp file (random name, owner-only, rewritten if a temp cleaner removed it). `require('typescript')` still resolves from node's working directory, as before. + + ## Measured (full cold index, v0.87.9 vs this branch) + | corpus | symbols | edges added | edges removed | index time | + |---|---|---|---|---| + | gin | +64 | 159, all touching the new symbols | 0 | 1.0s both | + | grafana | +2073 | contains 2073, uses-type 503, extends/implements/overrides 129 | 17 wrong contains (build-tag variants); 8 name-guessed TS calls (all wrong, e.g. `Array.filter` -> `ScopedEventBus.filter`) | 49-64s, noise | + | typeorm (typescript resolvable) | +614 | ~150 native calls into the new symbols; calls inside nested functions moved off `` | calls retargeted from wrong same-named symbols | 10.1-11.3s both | + + ''' + s=s[:i]+new+s[j:] + s=s.replace('- The research engine gate passed on the Go build ("All invariants held"). The gate on the combined build is running.','- The research engine gate passed on the Go build, on the combined build, and again after the name-guess rule ("All invariants held"). Note that the gate never runs the TypeScript compiler, because no gate corpus has typescript installed.') + open(p,'w').write(s) + EOF + gh pr edit 23 --body-file /tmp/pr23.md >/dev/null && echo updated; rm /tmp/pr23.md + at: 2026-10-12T04:53:36.701028Z + classified: build + - cmd: |- + cd ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && python3 - <<'EOF' + p='project_go_ts_compiler_declared_2026_10_12.md'; s=open(p).read() + old='''grove PR #23 (draft): commits 63ca4b51 (Go) + c7afc3c9 (TS).''' + new='''grove PR #23 (draft): commits 63ca4b51 (Go), c9113dd0 (TS), 3cf99ca9 (graph: name-guessed calls/uses-type/reads/writes never target a + compiler-declared symbol - without it typeorm ContainerInterface.get went 2 -> 12 sites with 9 false getConnectionManager().get callers; with it 3), + b890e993 (Windows: tsScript 34k > 32767 cmdline cap -> node -e loader evals a private temp file; direct eval keeps cwd require resolution).''' + assert s.count(old)==1; open(p,'w').write(s.replace(old,new)) + EOF + echo ok + at: 2026-10-12T04:53:42.079257Z + classified: other + - cmd: until grep -q "# done" <(tail -1 /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/driver.log) || ! pgrep -f "run_e2e.py results/java13" >/dev/null; do sleep 20; done; tail -5 /Users/tapabratapal/Projects/provasign/research/harness/results/bench-v0879-java13-2026-10-12/driver.log + at: 2026-10-12T04:53:45.569661Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/b0fzsqg1s.output + at: 2026-10-12T04:55:16.77647Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness/results && python3 - <<'EOF' + import json,glob + old={} + for p in glob.glob('bench-v0877-issue*/*.json'): + try:d=json.load(open(p)) + except:continue + if isinstance(d,dict) and 'resolved' in d: old[(d['task'],d['arm'])]=(d['resolved'],d.get('cost_usd') or 0) + new={} + for p in glob.glob('bench-v0879-java13-2026-10-12/*.claude-*.json'): + d=json.load(open(p)); tu=d.get('tool_usage',{}) + new[(d['task'],d['arm'])]=(d['resolved'],d['cost_usd'],tu.get('tool_calls'),tu.get('prism_ops'),d['score'].get('f2p_ok'),d['score'].get('p2p_ok')) + ids=json.load(open('java13-resolved-manifest.json')) + f=lambda r: '—' if r is None else ('PASS' if r[0] else 'FAIL') + tn=tp=cn=cp=kn=kp=0 + for i in ids: + n,p=new.get((i,'native')),new.get((i,'prism_init')) + on,op=old.get((i,'native')),old.get((i,'prism_init')) + tn+=n[0];tp+=p[0];cn+=n[1];cp+=p[1];kn+=n[2];kp+=p[2] + print(f"| {i.split('__')[-2].replace('-databind','')} {i.split('__')[-1]} | {f(n)} | {f(p)} | ${n[1]:.2f} / ${p[1]:.2f} ({p[1]/n[1]:.2f}x) | {n[2]} / {p[2]} | {f(on)} / {f(op)} | {p[3]}") + print(tn,tp,round(cn,2),round(cp,2),round(cp/cn,2),kn,kp) + EOF + at: 2026-10-12T04:57:35.577215Z + classified: other + - cmd: |- + cd /Users/tapabratapal/Projects/provasign/research/harness && python3 -c " + import json + for a in ['native','prism_init']: + d=json.load(open(f'results/bench-v0879-java13-2026-10-12/apache__dubbo__pr16395.claude-sonnet-5-5.{a}.json'));print(a,d['score']) + t=json.load(open('tasks/e2e/apache__dubbo__pr16395.json'));print(t['patch'][:900])"; echo ---P; grep '^[-+]' results/bench-v0879-java13-2026-10-12/apache__dubbo__pr16395.claude-sonnet-5-5.prism_init.diff | head -20; echo ---OLDP; grep '^[-+]' results/bench-v0877-issue42-2026-10-11/apache__dubbo__pr16395.claude-sonnet-5-5.prism_init.diff | head -12 + at: 2026-10-12T04:57:40.908816Z + classified: other + - cmd: |- + cd ~/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory && cat > project_java13_resolved_run_2026_10_12.md <<'EOF' + --- + name: project-java13-resolved-run-2026-10-12 + description: "2026-10-12: 13 Java issue pairs that resolved on v0.87.7, rerun on v0.87.9: native 11/13, prism 11/13, prism cost 1.10x, calls 74 vs 74, 0 change_impact; both losses model variance (right lines, narrower fix)" + metadata: + type: project + --- + + Topo asked for "Java with issue text that resolved". Run: research/harness/results/bench-v0879-java13-2026-10-12 (manifest + results/java13-resolved-manifest.json), Sonnet 5.5, 1 trial, v0.87.9 (PRISM_INIT_BIN=/opt/homebrew/bin/prism). + + native 11/13, prism 11/13 (v0.87.7: native 12/13, prism 13/13). Cost $1.22 vs $1.34 (1.10x), calls 74 vs 74. Prism ops: search/read/lookup only, + change_impact 0. Small tasks (2-13 calls) where per-cell fixed overhead dominates (dubbo pr16348 1.73x on $0.07). + - jackson pr6042: both FAIL this run (both PASS on v0.87.7): right line in StringCollectionDeserializer, both wrapped _parseString and reset the + exception token instead of handleUnexpectedToken(START_ARRAY) -> message unchanged. + - dubbo pr16395: both FAIL (v0.87.7 native FAIL, prism PASS): prism deleted the tail merge in BitList.and instead of intersecting tails. + + **Why:** with [[project-java5-issue-run-2026-10-12]]: the issue bed's Java tasks are 1-2 file fixes; v0.87.9's Java index changes cannot move them. + Outcome differences are fix-design variance with the same context on screen. + **How to apply:** don't read the v0.87.7 -> v0.87.9 flips as a regression; n=1 per cell. A Java graph effect needs override-family tasks. + EOF + python3 - <<'EOF' + p='MEMORY.md';s=open(p).read() + line='- [Java13 resolved run 2026-10-12](project_java13_resolved_run_2026_10_12.md) — 13 previously-resolved Java issue pairs on v0.87.9: 11/13 both arms, cost 1.10x, 0 change_impact; both losses = fix-design variance\n' + i=s.index('- [Java5 issue run') + open(p,'w').write(s[:i]+line+s[i:]) + EOF + python3 - <<'EOF' + p='/Users/tapabratapal/.claude/projects/-Users-tapabratapal-Projects-provasign-prism/memory/project_handoff_2026_10_12.md'; s=open(p).read() + old='## Open items (in priority order)\n' + new='''## Update 2026-10-12 night (Topo asleep, said keep going) + - research PR #1: CI pinned prism v0.87.0 -> bumped to v0.87.9 (afacdaea), CI GREEN (55/55). Merge was blocked by auto mode -> Topo merges. + - Benchmarks on v0.87.9 (Java issue bed): [[project-java5-issue-run-2026-10-12]] 0/5 both; [[project-java13-resolved-run-2026-10-12]] 11/13 both. + - Compiler-first for other languages: grove draft PR #23, all CI green incl. Windows -> [[project-go-ts-compiler-declared-2026-10-12]]. + - Branch cleanup done (archive/ tags for local-only branches). + + ## Open items (in priority order) + ''' + assert s.count(old)==1; open(p,'w').write(s.replace(old,new)) + EOF + echo ok + at: 2026-10-12T04:57:56.284122Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && gh pr view 1 --json state,mergeable,mergeStateStatus,statusCheckRollup --jq '{state,mergeable,mergeStateStatus,checks:[.statusCheckRollup[]|{name,conclusion}]}' + at: 2026-10-12T11:27:43.074444Z + classified: other + - cmd: gh -R provasign/research pr merge 1 --merge && gh -R provasign/research pr view 1 --json state --jq .state + at: 2026-10-12T11:28:53.93545Z + classified: other + - cmd: gh -R provasign/grove pr view 23 --json state,isDraft,mergeStateStatus,mergeable,headRefOid --jq '{state,isDraft,mergeStateStatus,mergeable,headRefOid}'; git -C /Users/tapabratapal/Projects/provasign/grove log --oneline -1 feat/go-compiler-declared + at: 2026-10-12T11:29:20.466553Z + classified: other + - cmd: gh -R provasign/grove pr ready 23 && gh -R provasign/grove pr merge 23 --merge && gh -R provasign/grove pr view 23 --json state,mergeCommit --jq '{state,c:.mergeCommit.oid}' + at: 2026-10-12T11:31:30.711996Z + classified: other + - cmd: 'gh -R provasign/grove pr close 22 --comment "Closing unmerged: the background compiler pass measured slower (edge construction + store write run twice). Branch kept." && gh -R provasign/prism pr close 49 --comment "Closing unmerged with grove #22: background compiler pass measured not worth it. Branch kept."' + at: 2026-10-12T11:32:09.011677Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && git fetch -q origin && git tag --sort=-v:refname | head -3 && gh run list -b main -L 5 --json name,status,conclusion,headSha --jq '.[]|"\(.headSha[0:8]) \(.name) \(.status) \(.conclusion)"' + at: 2026-10-12T11:32:19.82592Z + classified: other + - cmd: git status --short && git checkout -q -b deps/grove-compiler-declared-go-ts origin/main 2>&1; git fetch -q origin && git log --oneline -1 origin/main && GOWORK=off GOFLAGS=-mod=mod GOPROXY=direct go get github.com/provasign/grove@5db74c2807364aa80129d0258617d57774d7d32d 2>&1 | tail -3 && grep provasign/grove go.mod + at: 2026-10-12T11:32:30.450283Z + classified: other + - cmd: GOWORK=off GOPROXY=direct go get github.com/provasign/grove@5db74c2807364aa80129d0258617d57774d7d32d 2>&1 | tail -3 && grep provasign/ go.mod && GOWORK=off go build -o /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/bin/prism-rc ./cmd/prism && echo built + at: 2026-10-12T11:33:11.86396Z + classified: build + - cmd: GOWORK=off go test ./... 2>&1 | grep -v '^ok' | tail -20; echo "tests=${pipestatus[1]}" + at: 2026-10-12T11:33:16.056172Z + classified: test + - cmd: ls -d ~/ci-corpus 2>/dev/null && ls ~/ci-corpus | head -30 + at: 2026-10-12T11:33:16.113895Z + classified: other + - cmd: rm -rf ~/ci-corpus/*/.grove && cd /Users/tapabratapal/Projects/provasign/research && git pull -q --ff-only origin main 2>&1 | tail -2; git log --oneline -1; python3 harness/scoring/ci_invariants.py --corpus-root ~/ci-corpus --prism /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/bin/prism-rc 2>&1 | tail -40 + at: 2026-10-12T11:33:28.631185Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && for id in $(gh run list -b main -L 4 --json databaseId,headSha --jq '.[]|select(.headSha|startswith("5db74c28"))|.databaseId'); do gh run watch $id --exit-status >/dev/null 2>&1; echo "$id $?"; done; gh run list -b main -L 2 --json name,conclusion --jq '.[]|"\(.name) \(.conclusion)"' + at: 2026-10-12T11:33:39.721274Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bv0i71fjx.output + at: 2026-10-12T11:33:55.378817Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/bsofdavay.output + at: 2026-10-12T11:34:27.25827Z + classified: other + - cmd: cat /private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/3b8013cf-a73d-45a2-8ba4-8a4f4e2c77ae/tasks/b8efo19pd.output + at: 2026-10-12T11:36:33.203971Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/research && S=/private/tmp/claude-501/-Users-tapabratapal-Projects-provasign-prism/b078ae73-7c6b-4498-a9f7-eeada0292d5a/scratchpad/bin && python3 harness/scoring/ci_invariants.py --corpus-root ~/ci-corpus --prism $S/prism-rc --decoy-injector $S/decoy 2>&1 | sed -n '/Decoy/,$p' + at: 2026-10-12T11:38:07.596403Z + classified: other + - cmd: cd /Users/tapabratapal/Projects/provasign/grove && git ls-remote --tags origin v0.63.6; git tag -l v0.63.6 + at: 2026-10-12T12:00:28.444212Z + classified: other + - cmd: 'cd /Users/tapabratapal/Projects/provasign/grove && git tag -a v0.63.6 5db74c28 -m "v0.63.6: Go + TypeScript compiler-declared symbols" && git push origin v0.63.6' + at: 2026-10-12T12:00:38.826426Z + classified: other + - cmd: git branch --show-current && GOWORK=off GOPROXY=direct go get github.com/provasign/grove@v0.63.6 2>&1 | tail -2 && grep provasign/grove go.mod && GOWORK=off go build ./... && GOWORK=off go test ./... 2>&1 | grep -v '^ok' | grep -v 'no test files'; echo "tests=$?"; git diff --stat + at: 2026-10-12T12:01:45.671746Z + classified: test +notes: [] +redactions: 0