Skip to content
Change the repository type filter

All

    Repositories list

    • TrackMate

      Public
      TrackMate is your buddy for your everyday tracking.
      Java
      GNU General Public License v3.0
      82235113Updated Mar 25, 2026Mar 25, 2026
    • Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.
      Java
      GNU Affero General Public License v3.0
      1220Updated Mar 16, 2026Mar 16, 2026
    • Trackastra integration as a tracker module in TrackMate.
      Java
      GNU General Public License v3.0
      0200Updated Dec 16, 2025Dec 16, 2025
    • Spotiflow integration in TrackMate.
      Java
      GNU General Public License v3.0
      1001Updated Dec 16, 2025Dec 16, 2025
    • YOLO integration as a detector in TrackMate.
      Java
      GNU General Public License v3.0
      0000Updated Dec 16, 2025Dec 16, 2025
    • Tentative Cellpose integration in TrackMate.
      Java
      GNU Affero General Public License v3.0
      4930Updated Dec 16, 2025Dec 16, 2025
    • Using a Weka classifier as detector for TrackMate.
      Java
      GNU General Public License v3.0
      0100Updated Nov 18, 2025Nov 18, 2025
    • TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.
      Java
      GNU General Public License v3.0
      0301Updated Nov 18, 2025Nov 18, 2025
    • MaMuT

      Public
      The fiji plugin for Massive Annotation
      Java
      GNU General Public License v3.0
      6611Updated Nov 18, 2025Nov 18, 2025
    • Input / output of TrackMate files to GEFF
      Java
      GNU General Public License v3.0
      0000Updated Nov 18, 2025Nov 18, 2025
    • StarDist detection as TrackMate detectors.
      Java
      GNU General Public License v3.0
      2730Updated Nov 18, 2025Nov 18, 2025
    • Using Ilastik pixel classifiers as detector for TrackMate.
      Java
      GNU General Public License v3.0
      1101Updated Nov 18, 2025Nov 18, 2025
    • Perform ExTrack computation in TrackMate.
      Java
      GNU General Public License v3.0
      0020Updated Nov 17, 2025Nov 17, 2025
    • An importer for CSV files in TrackMate.
      Java
      GNU General Public License v3.0
      0220Updated Nov 17, 2025Nov 17, 2025
    • TrackMate integration of the inTRACKtive track visualizer by the Royer lab.
      Java
      GNU General Public License v3.0
      0000Updated Jul 30, 2025Jul 30, 2025
    • TrackMate module for skeletonization of tissue end points and tracking
      Java
      GNU General Public License v3.0
      2110Updated Aug 29, 2024Aug 29, 2024
    • A Fiji plugin to pair two TrackMate files and extract statistics from pairs.
      Java
      GNU General Public License v3.0
      0000Updated Jul 25, 2024Jul 25, 2024
    • Generate kymographs from lines between two tracks in TrackMate.
      Java
      GNU General Public License v3.0
      0010Updated Jul 22, 2024Jul 22, 2024
    • TrackMate extension for oneat for verifying lineage trees
      Java
      GNU General Public License v3.0
      1310Updated Jul 2, 2024Jul 2, 2024
    • A Fiji plugin to track the dynamics of dendrites in 2D time-lapse movies.
      Java
      BSD 3-Clause "New" or "Revised" License
      0200Updated Nov 5, 2023Nov 5, 2023
    • A simple repository that shows how to extend TrackMate with your own modules.
      Java
      GNU General Public License v3.0
      9200Updated Feb 23, 2023Feb 23, 2023
    • Core library for TrackMate applications. Ship basic data structures and algorithms.
      Java
      MIT License
      0000Updated Oct 1, 2022Oct 1, 2022
    • .github

      Public
      TrackMate organization profile
      The Unlicense
      0000Updated Sep 7, 2022Sep 7, 2022
    • Repository for the source files used to generate the MaMuT tutorials, following Tobias Pietzsch architecture.
      TeX
      0000Updated Nov 14, 2016Nov 14, 2016
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.