Repositories list

• TrackMate

  Public
  TrackMate is your buddy for your everyday tracking.

  image-analysisfiji-pluginsingle-particle-tracking

  image-analysisfiji-pluginsingle-particle-tracking

  Java

  •

  GNU General Public License v3.0

  •8282 forks•235235 stars•1111 issues•33 pull requests•Updated Mar 25, 2026Mar 25, 2026

• TrackMate-CTCRunner

  Public
  Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.

  Java

  •

  GNU Affero General Public License v3.0

  •11 fork•22 stars•22 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• TrackMate-Trackastra

  Public
  Trackastra integration as a tracker module in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-Spotiflow

  Public
  Spotiflow integration in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•11 pull request•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-YOLO

  Public
  YOLO integration as a detector in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-Cellpose

  Public
  Tentative Cellpose integration in TrackMate.

  Java

  •

  GNU Affero General Public License v3.0

  •44 forks•99 stars•33 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• TrackMate-Weka

  Public
  Using a Weka classifier as detector for TrackMate.

  Java

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-MorphoLibJ

  Public
  TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.

  Java

  •

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•11 pull request•Updated Nov 18, 2025Nov 18, 2025

• MaMuT

  Public
  The fiji plugin for Massive Annotation

  Java

  •

  GNU General Public License v3.0

  •66 forks•66 stars•11 issue•11 pull request•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-Geff

  Public
  Input / output of TrackMate files to GEFF

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-StarDist

  Public
  StarDist detection as TrackMate detectors.

  Java

  •

  GNU General Public License v3.0

  •22 forks•77 stars•33 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-Ilastik

  Public
  Using Ilastik pixel classifiers as detector for TrackMate.

  Java

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•11 pull request•Updated Nov 18, 2025Nov 18, 2025

• TrackMate-ExTrack

  Public
  Perform ExTrack computation in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•22 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• TrackMate-CSVImporter

  Public
  An importer for CSV files in TrackMate.

  trackingcsvimporter+ 1

  trackingcsvimportertrackmate

  Java

  •

  GNU General Public License v3.0

  •00 forks•22 stars•22 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• TrackMate-InTRACKtive

  Public
  TrackMate integration of the inTRACKtive track visualizer by the Royer lab.

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 30, 2025Jul 30, 2025

• TrackMate-Skeleton

  Public
  TrackMate module for skeletonization of tissue end points and tracking

  Java

  •

  GNU General Public License v3.0

  •22 forks•11 star•11 issue•00 pull requests•Updated Aug 29, 2024Aug 29, 2024

• TrackMate-Pairing

  Public
  A Fiji plugin to pair two TrackMate files and extract statistics from pairs.

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 25, 2024Jul 25, 2024

• TrackMate-Kymograph

  Public
  Generate kymographs from lines between two tracks in TrackMate.

  Java

  •

  GNU General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 22, 2024Jul 22, 2024

• TrackMate-Oneat

  Public
  TrackMate extension for oneat for verifying lineage trees

  Java

  •

  GNU General Public License v3.0

  •11 fork•33 stars•11 issue•00 pull requests•Updated Jul 2, 2024Jul 2, 2024

• DendriteDynamicsTracker

  Public
  A Fiji plugin to track the dynamics of dendrites in 2D time-lapse movies.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Nov 5, 2023Nov 5, 2023

• TrackMate-examples

  Public
  A simple repository that shows how to extend TrackMate with your own modules.

  Java

  •

  GNU General Public License v3.0

  •99 forks•22 stars•00 issues•00 pull requests•Updated Feb 23, 2023Feb 23, 2023

• trackmate-core

  Public
  Core library for TrackMate applications. Ship basic data structures and algorithms.

  Java

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 1, 2022Oct 1, 2022

• .github

  Public
  TrackMate organization profile

  The Unlicense

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 7, 2022Sep 7, 2022

• MaMuT-tutorials

  Public
  Repository for the source files used to generate the MaMuT tutorials, following Tobias Pietzsch architecture.

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2016Nov 14, 2016