Repositories list

• omicsplayground

  Public

  bigomics/omicsplayground’s past year of commit activity
  Visual self-service analytics platform for big omics data.

  rna-seqgenomicsomics+ 2

  rna-seqgenomicsomicsrna-seq-analysisgenomics-visualization

  R

  •

  Other

  •3737 forks•130130 stars•1616 issues•77 pull requests•Updated Apr 20, 2026Apr 20, 2026

• playbase

  Public

  bigomics/playbase’s past year of commit activity
  Core back-end functionality and logic for OmicsPlayground

  R

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  Other

  •00 forks•44 stars•11 issue•44 pull requests•Updated Apr 20, 2026Apr 20, 2026

• plaid

  Public

  bigomics/plaid’s past year of commit activity
  Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data

  bioinformaticsrna-seq-analysisenrichment-analysis+ 1

  bioinformaticsrna-seq-analysisenrichment-analysisomics-data

  R

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  GNU General Public License v3.0

  •11 fork•2323 stars•11 issue•00 pull requests•Updated Apr 19, 2026Apr 19, 2026

• WGCNAplus

  Public

  bigomics/WGCNAplus’s past year of commit activity
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• metaLINCS

  Public

  bigomics/metaLINCS’s past year of commit activity
  R

  •

  GNU General Public License v3.0

  •11 fork•77 stars•00 issues•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• plotly.repel

  Public

  bigomics/plotly.repel’s past year of commit activity
  R package for repelling overlapping text labels for plotly

  R

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  Other

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 2, 2026Mar 2, 2026

• lasagna

  Public

  bigomics/lasagna’s past year of commit activity
  Multi-Layer Graph Analysis (LASAGNA) for Multi-Omics Data

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 27, 2026Feb 27, 2026

• visNetwork

  Public

  bigomics/visNetwork’s past year of commit activity
  R package, using vis.js library for network visualization

  JavaScript

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  Other

  •128128 forks•00 stars•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• ultragsea

  Public

  bigomics/ultragsea’s past year of commit activity
  Ultragsea computes preranked gene set enrichment much like fGSEA but is 100 times faster

  bioinformaticsrna-seqenrichment-analysis+ 1

  bioinformaticsrna-seqenrichment-analysisomics-data

  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 25, 2025Dec 25, 2025

• playdata

  Public

  bigomics/playdata’s past year of commit activity
  Internal datasets needed for playbase

  R

  •00 forks•11 star•22 issues•11 pull request•Updated Nov 14, 2025Nov 14, 2025

• bigdash

  Public
  R

  •

  Other

  •00 forks•44 stars•00 issues•00 pull requests•Updated Nov 12, 2025Nov 12, 2025

• omicsplayground-doc

  Public
  Python

  •33 forks•22 stars•00 issues•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• NPM

  Public
  Latent Batch Effect Correction of Omics data by Nearest-Pair Matching

  R

  •

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•00 pull requests•Updated Sep 9, 2025Sep 9, 2025

• wizardR

  Public

  bigomics/wizardR’s past year of commit activity
  R/Shiny Multi-Step Wizard

  R

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  MIT License

  •22 forks•11 star•00 issues•00 pull requests•Updated Oct 1, 2024Oct 1, 2024

• PCSF

  Public

  bigomics/PCSF’s past year of commit activity
  HTML

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  MIT License

  •1111 forks•00 stars•00 issues•00 pull requests•Updated Jul 4, 2024Jul 4, 2024

• biomaRt

  Public

  bigomics/biomaRt’s past year of commit activity
  R package providing query functionality to BioMart instances like Ensembl

  R

  •1818 forks•00 stars•00 issues•00 pull requests•Updated Apr 18, 2024Apr 18, 2024

• fgsea

  Public

  bigomics/fgsea’s past year of commit activity
  Fast Gene Set Enrichment Analysis

  R

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  Other

  •7171 forks•00 stars•00 issues•00 pull requests•Updated Oct 26, 2023Oct 26, 2023

• EuroBioC2023

  Public

  bigomics/EuroBioC2023’s past year of commit activity
  EuroBioC2023

  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 22, 2023Sep 22, 2023

• shinyCAPTCHA

  Public
  Shiny module for google reCAPTCHA V2

  R

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  Other

  •33 forks•00 stars•00 issues•00 pull requests•Updated Aug 3, 2023Aug 3, 2023

• shinyChatR

  Public

  bigomics/shinyChatR’s past year of commit activity
  shiny module chat

  R

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  GNU General Public License v3.0

  •55 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2023Jul 17, 2023

• azimuth

  Public

  bigomics/azimuth’s past year of commit activity
  A Shiny web app for mapping datasets using Seurat v4

  R

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  GNU General Public License v3.0

  •4444 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2023Jun 19, 2023

• bigLoaders

  Public
  R

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2023Apr 14, 2023

• archs4

  Public

  bigomics/archs4’s past year of commit activity
  An R interface to query and extract data from the ARCHS4 data

  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 8, 2023Mar 8, 2023

• docs

  Public
  Ruby

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2023Jan 10, 2023

• shiny-plotly-editor

  Public

  bigomics/shiny-plotly-editor’s past year of commit activity
  HTML

  •33 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2022Oct 9, 2022

• shiny-timer

  Public

  bigomics/shiny-timer’s past year of commit activity
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 24, 2022Sep 24, 2022

• README-template.md

  Public

  bigomics/README-template.md’s past year of commit activity
  A README template for anyone to copy and use.

  595595 forks•11 star•00 issues•00 pull requests•Updated Oct 12, 2021Oct 12, 2021

• bigomics.github.io

  Public
  HTML

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  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated May 21, 2019May 21, 2019