This folder stores all data used by GLOOM.
raw/contains the original files.processed/contains cleaned files created by the pipeline. Use this folder when you want to understand where the data starts and how it becomes analysis-ready.
This folder contains original external input files. Do not edit these files by hand. Use this folder when running the full pipeline from scratch or checking data provenance.
This folder contains cleaned and transformed files. These are automatically generated by the pipeline. Use this folder to inspect preprocessing, features, and split files.
This folder contains the main final answers from GLOOM. Use it to find ranked genes, novel candidates, feature importance, and model performance.
This folder contains annotated network outputs. Use it to inspect the gene network and to export it to graph tools.
This folder contains the network in different formats. Use it when you need GraphML, GML, JSON, TSV, or smaller subnetworks.
This folder contains final summary reports and figures. Use it when you want a human-readable result summary.
This folder contains static and interactive visual outputs. Use it for browsing, explaining, and presenting the results.
This folder stores trained models and model helper files. Use it when you want to reuse or inspect trained ML models.
This folder contains run logs. Use it for debugging, timing, and documenting successful runs.