diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml index ad686e8e..4175e3c8 100644 --- a/.github/actions/nf-test/action.yml +++ b/.github/actions/nf-test/action.yml @@ -20,12 +20,12 @@ runs: using: "composite" steps: - name: Setup Nextflow - uses: nf-core/setup-nextflow@b4ec1bc7c16a94435159de94a05253542fddf6ef # v3 + uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 with: version: "${{ env.NXF_VERSION }}" - name: Set up Python - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6 + uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7 with: python-version: "3.14" @@ -37,7 +37,7 @@ runs: - name: Setup apptainer if: contains(inputs.profile, 'singularity') - uses: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40 # v2 + uses: eWaterCycle/setup-apptainer@3f706d898c9db585b1d741b4692e66755f3a1b40 # v2.0.0 - name: Set up Singularity if: contains(inputs.profile, 'singularity') diff --git a/.github/workflows/clean-up.yml b/.github/workflows/clean-up.yml index 172de6f3..b6940123 100644 --- a/.github/workflows/clean-up.yml +++ b/.github/workflows/clean-up.yml @@ -10,7 +10,7 @@ jobs: issues: write pull-requests: write steps: - - uses: actions/stale@b5d41d4e1d5dceea10e7104786b73624c18a190f # v10 + - uses: actions/stale@4391f3da665fdf50b6810c1a66712fb9ba21aa93 # v11 with: stale-issue-message: "This issue has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment otherwise this issue will be closed in 20 days." stale-pr-message: "This PR has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment if it is still useful." diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml index a7bf4fc2..ca2eb822 100644 --- a/.github/workflows/download_pipeline.yml +++ b/.github/workflows/download_pipeline.yml @@ -39,15 +39,15 @@ jobs: needs: configure steps: - name: Check out pipeline code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 - name: Install Nextflow - uses: nf-core/setup-nextflow@b4ec1bc7c16a94435159de94a05253542fddf6ef # v3 + uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 - name: Disk space cleanup uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1 - - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6 + - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7 with: python-version: "3.14" architecture: "x64" diff --git a/.github/workflows/fix_linting.yml b/.github/workflows/fix_linting.yml index 20e51bd8..87dfacf3 100644 --- a/.github/workflows/fix_linting.yml +++ b/.github/workflows/fix_linting.yml @@ -13,7 +13,7 @@ jobs: runs-on: ubuntu-latest steps: # Use the @nf-core-bot token to check out so we can push later - - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 with: token: ${{ secrets.nf_core_bot_auth_token }} @@ -32,12 +32,12 @@ jobs: GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }} - name: Install Nextflow - uses: nf-core/setup-nextflow@b4ec1bc7c16a94435159de94a05253542fddf6ef # v3 + uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 # Install and run prek - name: Run prek id: prek - uses: j178/prek-action@6ad80277337ad479fe43bd70701c3f7f8aa74db3 # v2 + uses: j178/prek-action@5337cb91e0fa35a7ff31b9ca345126d8bbbcdf16 # v2 continue-on-error: true # indication that the linting has finished diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml index bc32219b..277f12fb 100644 --- a/.github/workflows/linting.yml +++ b/.github/workflows/linting.yml @@ -11,30 +11,30 @@ jobs: pre-commit: runs-on: ubuntu-latest steps: - - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 - name: Install Nextflow - uses: nf-core/setup-nextflow@b4ec1bc7c16a94435159de94a05253542fddf6ef # v3 + uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 - name: Run prek - uses: j178/prek-action@6ad80277337ad479fe43bd70701c3f7f8aa74db3 # v2 + uses: j178/prek-action@5337cb91e0fa35a7ff31b9ca345126d8bbbcdf16 # v2 nf-core: runs-on: ubuntu-latest steps: - name: Check out pipeline code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 - name: Install Nextflow - uses: nf-core/setup-nextflow@b4ec1bc7c16a94435159de94a05253542fddf6ef # v3 + uses: nf-core/setup-nextflow@893c28b667aedeba26e37f296d260ccc5bc4d914 # v3 - - uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6 + - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7 with: python-version: "3.14" architecture: "x64" - name: Setup uv - uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0 + uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 - name: read .nf-core.yml uses: pietrobolcato/action-read-yaml@9f13718d61111b69f30ab4ac683e67a56d254e1d # 1.1.0 @@ -46,7 +46,7 @@ jobs: run: uv tool install nf-core==${{ steps.read_yml.outputs['nf_core_version'] }} - name: Run nf-core pipelines lint - if: ${{ github.base_ref != 'master' || github.base_ref != 'main' }} + if: ${{ github.base_ref != 'master' && github.base_ref != 'main' }} env: GITHUB_COMMENTS_URL: ${{ github.event.pull_request.comments_url }} GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml index c4d85e67..6b1b2aca 100644 --- a/.github/workflows/nf-test.yml +++ b/.github/workflows/nf-test.yml @@ -40,7 +40,7 @@ jobs: rm -rf ./* || true rm -rf ./.??* || true ls -la ./ - - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 with: fetch-depth: 0 @@ -86,7 +86,7 @@ jobs: TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }} steps: - - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 with: fetch-depth: 0 diff --git a/.github/workflows/release-announcements.yml b/.github/workflows/release-announcements.yml index 78d5dbe0..4974f44f 100644 --- a/.github/workflows/release-announcements.yml +++ b/.github/workflows/release-announcements.yml @@ -18,7 +18,7 @@ jobs: id: get_description run: | echo "description=$(curl -s https://nf-co.re/pipelines.json | jq -r '.remote_workflows[] | select(.full_name == "${{ github.repository }}") | .description')" >> $GITHUB_OUTPUT - - uses: rzr/fediverse-action@563159eb8d45f70ab6aaba36ed55cd037e51f441 # master + - uses: rzr/fediverse-action@66c2cbb5b1997666b0e28d597631b6a4f09a2719 # v0.0.6 with: access-token: ${{ secrets.MASTODON_ACCESS_TOKEN }} host: "mstdn.science" # custom host if not "mastodon.social" (default) diff --git a/.github/workflows/template-version-comment.yml b/.github/workflows/template-version-comment.yml index ee102f71..149e2851 100644 --- a/.github/workflows/template-version-comment.yml +++ b/.github/workflows/template-version-comment.yml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Check out pipeline code - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6 + uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7 with: ref: ${{ github.event.pull_request.head.sha }} diff --git a/.hooks/block_pipeline_outdir.sh b/.hooks/block_pipeline_outdir.sh new file mode 100755 index 00000000..e9ba4f93 --- /dev/null +++ b/.hooks/block_pipeline_outdir.sh @@ -0,0 +1,44 @@ +#!/usr/bin/env bash +# This hook is used to block commits if they include staged files inside a directory +# which also contains a subdirectory called `pipeline_info`. The purpose of this is to +# prevent users from inadvertently committing output from pipeline test runs inside the +# development directory. + +set -e + +status=0 +seen_dirs="" + +while IFS= read -r file; do + # The offending output bundle's root is the ancestor directory that has + # `pipeline_info` as an immediate child, so callers can restore it in one go. + if [[ "$file" == pipeline_info/* ]]; then + top_dir="pipeline_info" + elif [[ "$file" == */pipeline_info/* ]]; then + top_dir="${file%%/pipeline_info/*}" + else + top_dir="" + dir=$(dirname "$file") + while [[ "$dir" != "." && "$dir" != "/" ]]; do + if [[ -d "$dir/pipeline_info" ]]; then + top_dir="$dir" + break + fi + dir=$(dirname "$dir") + done + fi + + if [[ -n "$top_dir" ]]; then + echo "❌ Commit blocked: Please do not commit output from pipeline test runs to the pipeline code itself: $file" + status=1 + case "$seen_dirs" in + *"|$top_dir|"*) ;; + *) + echo "Run 'git restore --staged $top_dir' to remove the whole output folder from the staging area." + seen_dirs="$seen_dirs|$top_dir|" + ;; + esac + fi +done < <(git diff --cached --name-only) + +exit "$status" diff --git a/.nf-core.yml b/.nf-core.yml index 9fcf2628..ca14bb34 100644 --- a/.nf-core.yml +++ b/.nf-core.yml @@ -12,7 +12,7 @@ lint: - docs/images/nf-core-spatialvi_logo_dark.png - .github/workflows/branch.yml - .github/workflows/linting.yml -nf_core_version: 4.0.2 +nf_core_version: 4.1.0 repository_type: pipeline template: author: Erik Fasterius, Christophe Avenel, Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index f51e1a28..e9503db1 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,7 +4,7 @@ repos: hooks: - id: prettier additional_dependencies: - - prettier@3.8.3 + - prettier@3.9.6 - repo: https://github.com/pre-commit/pre-commit-hooks rev: v6.0.0 hooks: @@ -25,9 +25,26 @@ repos: subworkflows/(?!local/).*| .*\.snap$ )$ + - id: check-added-large-files + args: [--maxkb=5000] + exclude: | + (?x)^( + .*ro-crate-metadata.json$| + .*\.snap$| + lib/nfcore_external_java_deps.jar$| + docs/.*\.(svg|pdf)$| + assets/.*$ + )$ + - id: check-merge-conflict - repo: https://github.com/seqeralabs/nf-lint-pre-commit rev: v0.3.0 hooks: - id: nextflow-lint files: '\.nf$|nextflow\.config$' args: ["-output", "json"] + - repo: local + hooks: + - id: block-pipeline-outdir + name: Prevent committing output from pipeline test runs to the pipeline code itself + entry: ./.hooks/block_pipeline_outdir.sh + language: script diff --git a/CHANGELOG.md b/CHANGELOG.md index 1d5c32dc..3f785daa 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [Unreleased] +## v1.0dev - [unreleased] Initial release of nf-core/spatialvi, created with the [nf-core](https://nf-co.re/) template. This marks the point at which the diff --git a/README.md b/README.md index 94dab0e6..d00e4ba9 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) -[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) +[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.1.0-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.1.0) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) diff --git a/conf/base.config b/conf/base.config index 9d40afef..231ea30e 100644 --- a/conf/base.config +++ b/conf/base.config @@ -42,6 +42,9 @@ process { withLabel:process_long { time = { 20.h * task.attempt } } + withLabel:process_low_memory { + memory = { 1.GB * task.attempt } + } withLabel:process_high_memory { memory = { 200.GB * task.attempt } } diff --git a/conf/containers_conda_lock_files_amd64.config b/conf/containers_conda_lock_files_amd64.config index d3ee1b4e..df04a4ba 100644 --- a/conf/containers_conda_lock_files_amd64.config +++ b/conf/containers_conda_lock_files_amd64.config @@ -1,2 +1,2 @@ -process { withName: 'FASTQC' { container = 'modules/nf-core/fastqc/.conda-lock/linux_amd64-bd-5cb1a2fa2f18c7c2_1.txt' } } -process { withName: 'MULTIQC' { container = 'modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-db7c73dae76bc9e6_1.txt' } } +process { withName: 'FASTQC' { conda = 'modules/nf-core/fastqc/.conda-lock/linux_amd64-bd-5cb1a2fa2f18c7c2_1.txt' } } +process { withName: 'MULTIQC' { conda = 'modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt' } } diff --git a/conf/containers_conda_lock_files_arm64.config b/conf/containers_conda_lock_files_arm64.config index 2b90ac4f..7ed29f32 100644 --- a/conf/containers_conda_lock_files_arm64.config +++ b/conf/containers_conda_lock_files_arm64.config @@ -1,2 +1,2 @@ -process { withName: 'FASTQC' { container = 'modules/nf-core/fastqc/.conda-lock/linux_arm64-bd-e455e32f745abe68_1.txt' } } -process { withName: 'MULTIQC' { container = 'modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-d167b8012595a136_1.txt' } } +process { withName: 'FASTQC' { conda = 'modules/nf-core/fastqc/.conda-lock/linux_arm64-bd-e455e32f745abe68_1.txt' } } +process { withName: 'MULTIQC' { conda = 'modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt' } } diff --git a/conf/containers_docker_amd64.config b/conf/containers_docker_amd64.config index 65f1814a..a66e3d1f 100644 --- a/conf/containers_docker_amd64.config +++ b/conf/containers_docker_amd64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'community.wave.seqera.io/library/fastqc:0.12.1--5cb1a2fa2f18c7c2' } } -process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.34--db7c73dae76bc9e6' } } +process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.35--c17fb751507e9dfc' } } diff --git a/conf/containers_docker_arm64.config b/conf/containers_docker_arm64.config index 6c845ba4..215f6865 100644 --- a/conf/containers_docker_arm64.config +++ b/conf/containers_docker_arm64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'community.wave.seqera.io/library/fastqc:0.12.1--e455e32f745abe68' } } -process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.34--d167b8012595a136' } } +process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.35--5c84a5000a226ab5' } } diff --git a/conf/containers_singularity_https_amd64.config b/conf/containers_singularity_https_amd64.config index 838f2484..2fb11a35 100644 --- a/conf/containers_singularity_https_amd64.config +++ b/conf/containers_singularity_https_amd64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f2/f20b021476d1d87658820f971ebecc1e8cdbde0f338eb0d9cea2b0a8fc54a54b/data' } } -process { withName: 'MULTIQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/1b/1bef8af6be88c5733461959c46ac8ef73d18f65277f62a1695d0e1633054f9c2/data' } } +process { withName: 'MULTIQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c8/c8e346f4f6080eadf1253505e6ff09ef004454fc18e8d672006fd7b222cc412e/data' } } diff --git a/conf/containers_singularity_https_arm64.config b/conf/containers_singularity_https_arm64.config index 090173be..5fa5b4f9 100644 --- a/conf/containers_singularity_https_arm64.config +++ b/conf/containers_singularity_https_arm64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/46/46daf2dad0169afd2ae047c3e50ed3776259f664bf07e5e06b045dc23449e994/data' } } -process { withName: 'MULTIQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/9a/9a1fec9662a152683e6fcae440d0ce20920b3b89dc62d1e3a52e73f92eba0969/data' } } +process { withName: 'MULTIQC' { container = 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/e4/e48aa28aebc881254a499b24c3e1ce77b8df1b85a5432699ed6f72eb17ac7fb5/data' } } diff --git a/conf/containers_singularity_oras_amd64.config b/conf/containers_singularity_oras_amd64.config index 773f3698..b3343757 100644 --- a/conf/containers_singularity_oras_amd64.config +++ b/conf/containers_singularity_oras_amd64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'oras://community.wave.seqera.io/library/fastqc:0.12.1--5c4bd442468d75dd' } } -process { withName: 'MULTIQC' { container = 'oras://community.wave.seqera.io/library/multiqc:1.34--4fc8657c816047c0' } } +process { withName: 'MULTIQC' { container = 'oras://community.wave.seqera.io/library/multiqc:1.35--c680f2aea25ccec2' } } diff --git a/conf/containers_singularity_oras_arm64.config b/conf/containers_singularity_oras_arm64.config index 798cc638..661c6568 100644 --- a/conf/containers_singularity_oras_arm64.config +++ b/conf/containers_singularity_oras_arm64.config @@ -1,2 +1,2 @@ process { withName: 'FASTQC' { container = 'oras://community.wave.seqera.io/library/fastqc:0.12.1--127a87fc06499035' } } -process { withName: 'MULTIQC' { container = 'oras://community.wave.seqera.io/library/multiqc:1.34--7fbd82d945c06726' } } +process { withName: 'MULTIQC' { container = 'oras://community.wave.seqera.io/library/multiqc:1.35--c0468833d65b2f81' } } diff --git a/conf/modules.config b/conf/modules.config index a002fec9..400e91ce 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -75,23 +75,19 @@ process { ext.args = { "--metadata subtitle:'Sample: ${meta.id}'" } container = 'community.wave.seqera.io/library/harmonypy_scanorama_gcc_gxx_pruned:95f731fde0b9ddef' publishDir = [ - [ - path: { "${params.outdir}/${meta.id}/reports" }, - mode: params.publish_dir_mode, - pattern: "*{.html,.qmd,_extensions}" - ], - [ - path: { "${params.outdir}/${meta.id}/reports" }, - mode: params.publish_dir_mode, - pattern: "params.yml", - saveAs: { "${notebook.baseName}.yml" } - ], - [ - path: { "${params.outdir}/${meta.id}/plots" }, - mode: params.publish_dir_mode, - pattern: "artifacts/*.png", - saveAs: { filename -> filename.split('/')[1] } - ] + path: { "${params.outdir}/${meta.id}" }, + mode: params.publish_dir_mode, + saveAs: { filename -> + if (filename ==~ /.*\.(html|qmd)$/ || filename.endsWith('_extensions')) { + "reports/${filename}" + } else if (filename == 'params.yml') { + "reports/${notebook.baseName}.yml" + } else if (filename.startsWith('artifacts/') && filename.endsWith('.png')) { + "plots/${filename.split('/')[1]}" + } else { + null + } + } ] } @@ -124,23 +120,19 @@ process { ext.prefix = { "${notebook.baseName}" } container = 'community.wave.seqera.io/library/harmonypy_scanorama_gcc_gxx_pruned:95f731fde0b9ddef' publishDir = [ - [ - path: { "${params.outdir}/integration/reports"}, - mode: params.publish_dir_mode, - pattern: "*{.html,.qmd,_extensions}" - ], - [ - path: { "${params.outdir}/integration/reports" }, - mode: params.publish_dir_mode, - pattern: "params.yml", - saveAs: { "${notebook.baseName}.yml" } - ], - [ - path: { "${params.outdir}/integration/plots" }, - mode: params.publish_dir_mode, - pattern: "artifacts/*.png", - saveAs: { filename -> filename.split('/')[1] } - ] + path: { "${params.outdir}/integration" }, + mode: params.publish_dir_mode, + saveAs: { filename -> + if (filename ==~ /.*\.(html|qmd)$/ || filename.endsWith('_extensions')) { + "reports/${filename}" + } else if (filename == 'params.yml') { + "reports/${notebook.baseName}.yml" + } else if (filename.startsWith('artifacts/') && filename.endsWith('.png')) { + "plots/${filename.split('/')[1]}" + } else { + null + } + } ] } diff --git a/docs/CONTRIBUTING.md b/docs/CONTRIBUTING.md index 1026c8b9..c9ac4d27 100644 --- a/docs/CONTRIBUTING.md +++ b/docs/CONTRIBUTING.md @@ -40,12 +40,12 @@ The nf-core stance on the use of AI and LLMs is that humans are still ultimately If you’re using AI tools, try to stick by these guidelines: -- Keep PRs as small and focussed as possible +- Keep PRs as small and focused as possible - Avoid any unnecessary changes, such as moving or refactoring code (unless that is the explicit intention of the PR) - Review all generated code yourself before opening a PR, and ensure that you understand it - Engage with the community review process and expect to make revisions -For more detail, see the the [blog post](https://nf-co.re/blog/2026/statement-on-ai) for a statement from the nf-core/core team. +For more detail, see the [blog post](https://nf-co.re/blog/2026/statement-on-ai) for a statement from the nf-core/core team. ### Getting help @@ -128,7 +128,7 @@ Please also refer to the [pipeline-specific contribution guidelines](#pipeline-s - [ ] Perform local tests to validate that the new code works as expected. - [ ] If applicable, add a new test in the `tests` directory. - [ ] Update `usage.md`, `output.md`, and `citation.md` as appropriate. -- [ ] [Lint](lint) the code with nf-core/tools. +- [ ] [Lint](#lint-tests) the code with nf-core/tools. - [ ] Update any diagrams or pipeline images as necessary. - [ ] Update MultiQC config `assets/multiqc_config.yml` so relevant suffixes, file name cleanup, and module plots are in the appropriate order. - [ ] If applicable, create a [MultiQC](https://seqera.io/multiqc/) module. @@ -166,7 +166,7 @@ Specify these with generic `withLabel:` selectors, so they can be shared across nf-core provides a set of standard labels that you should follow where possible, as seen in the [nf-core pipeline template](https://github.com/nf-core/tools/blob/main/nf_core/pipeline-template/conf/base.config). These labels define resource defaults for single-core processes, modules that require a GPU, and different levels of multi-core configurations with increasing memory requirements. -Values assigned within these labels can be dynamically passed to a tool using the the `${task.cpus}` and `${task.memory}` Nextflow variables in the `script:` block of a module (see an example in the [modules repository](https://github.com/nf-core/modules/blob/bd1b6a40f55933d94b8c9ca94ec8c1ea0eaf4b82/modules/nf-core/samtools/bam2fq/main.nf#L30)). +Values assigned within these labels can be dynamically passed to a tool using the `${task.cpus}` and `${task.memory}` Nextflow variables in the `script:` block of a module (see an example in the [modules repository](https://github.com/nf-core/modules/blob/bd1b6a40f55933d94b8c9ca94ec8c1ea0eaf4b82/modules/nf-core/samtools/bam2fq/main.nf#L30)). #### Nextflow version bumping diff --git a/docs/output.md b/docs/output.md index 29e07b64..61f41396 100644 --- a/docs/output.md +++ b/docs/output.md @@ -152,8 +152,4 @@ or Scanorama). -[Nextflow](https://www.nextflow.io/docs/latest/tracing.html) provides excellent -functionality for generating various reports relevant to the running and -execution of the pipeline. This will allow you to troubleshoot errors with the -running of the pipeline, and also provide you with other information such as -launch commands, run times and resource usage. +[Nextflow](https://docs.seqera.io/platform-cloud/reports/overview) provides excellent functionality for generating various reports relevant to the running and execution of the pipeline. This will allow you to troubleshoot errors with the running of the pipeline, and also provide you with other information such as launch commands, run times and resource usage. diff --git a/docs/usage.md b/docs/usage.md index 45625d56..2814e30a 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -243,7 +243,7 @@ If `-profile` is not specified, the pipeline will run locally and expect all sof - `apptainer` - A generic configuration profile to be used with [Apptainer](https://apptainer.org/) - `wave` - - A generic configuration profile to enable [Wave](https://seqera.io/wave/) containers. Use together with one of the above (requires Nextflow ` 24.03.0-edge` or later). + - A generic configuration profile to enable [Wave](https://seqera.io/wave/) containers. Use together with one of the above (requires Nextflow `24.03.0-edge` or later). - `conda` - A generic configuration profile to be used with [Conda](https://conda.io/docs/). Please only use Conda as a last resort i.e. when it's not possible to run the pipeline with Docker, Singularity, Podman, Shifter, Charliecloud, or Apptainer. diff --git a/modules.json b/modules.json index f33022fe..93a9d140 100644 --- a/modules.json +++ b/modules.json @@ -12,7 +12,7 @@ }, "multiqc": { "branch": "master", - "git_sha": "008f9d3e61209bf995edac3ba531f54e269e1215", + "git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade", "installed_by": ["modules"] }, "quartonotebook": { @@ -37,7 +37,7 @@ "nf-core": { "utils_nextflow_pipeline": { "branch": "master", - "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d", + "git_sha": "c2b22d85f30a706a3073387f30380704fcae013b", "installed_by": ["subworkflows"] }, "utils_nfcore_pipeline": { @@ -47,7 +47,7 @@ }, "utils_nfschema_plugin": { "branch": "master", - "git_sha": "fdc08b8b1ae74f56686ce21f7ea11ad11990ce57", + "git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436", "installed_by": ["subworkflows"] } } diff --git a/modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt b/modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt new file mode 100644 index 00000000..2a91c22d --- /dev/null +++ b/modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt @@ -0,0 +1,1526 @@ + +version: 6 +environments: +default: +channels: +- url: https://conda.anaconda.org/conda-forge/ +- url: https://conda.anaconda.org/bioconda/ +- url: https://conda.anaconda.org/bioconda/ +options: +pypi-prerelease-mode: if-necessary-or-explicit +packages: +linux-64: +- conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.5.0-py314h680f03e_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py314h3de4e8d_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.5.20-hbd8a1cb_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.5.20-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.7-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/click-8.4.0-pyhc90fa1f_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_4.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/colormath-3.0.0-pyhd8ed1ab_4.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/cpython-3.14.5-py314hd8ed1ab_100.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/expat-2.8.1-hecca717_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.18.0-h27c8c51_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-hc364b38_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/humanfriendly-10.0-pyh707e725_8.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/humanize-4.15.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.15-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-9.0.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.26.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2025.9.1-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/kaleido-core-0.2.1-h3644ca4_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.19.1-h0c24ade_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/lerc-4.1.0-hdb68285_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-7_h4a7cf45_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-7_h0358290_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.8.1-hecca717_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libfreetype-2.14.3-ha770c72_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libfreetype6-2.14.3-h73754d4_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran-15.2.0-h69a702a_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-h68bc16d_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.1.4.1-hb03c661_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.11.0-7_h47877c9_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.33-pthreads_h94d23a6_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.58-h421ea60_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.1-h0c1763c_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.7.1-h9d88235_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.42.1-h5347b49_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.6.0-hd42ef1d_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.17.0-h8a09558_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.2.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/mathjax-2.7.7-ha770c72_3.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/mdurl-0.1.2-pyhd8ed1ab_1.conda +- conda: https://conda.anaconda.org/bioconda/noarch/multiqc-1.35-pyhdfd78af_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/narwhals-2.21.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/natsort-8.4.0-pyhcf101f3_2.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.6-hdb14827_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/networkx-3.6.1-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/nspr-4.38-h29cc59b_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/nss-3.118-h445c969_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/numpy-2.4.6-py314h2b28147_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.4-h55fea9a_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.2-h35e630c_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/packaging-26.2-pyhc364b38_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/pillow-12.2.0-py314h8ec4b1a_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/plotly-6.6.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/polars-1.41.0-pyh58ad624_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-32-1.41.0-py310h49dadd8_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-compat-1.41.0-py310hcbd6021_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/procps-ng-4.0.6-h18c060e_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-hb9d3cd8_1002.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pyaml-env-1.2.2-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.13.4-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.46.4-py314h2e6c369_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.20.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.14.5-habeac84_100_cp314.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-dotenv-1.2.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-gil-3.14.5-h4df99d1_100.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-kaleido-0.2.1-pyhd8ed1ab_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py314h67df5f8_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/regex-2026.5.9-py314h5bd0f2a_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-click-1.9.7-pyh8f84b5b_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/rpds-py-0.30.0-py314h2e6c369_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/spectra-0.0.11-pyhd8ed1ab_2.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.1-hbc0de68_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/tiktoken-0.12.0-py314h67fec18_3.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h366c992_103.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/tqdm-4.67.3-pyh8f84b5b_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.5.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.7.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.12-hb03c661_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.5-hb03c661_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h280c20c_3.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/zipp-4.1.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/zlib-ng-2.3.3-hceb46e0_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda +packages: +- conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda +build_number: 20 +sha256: 1dd3fffd892081df9726d7eb7e0dea6198962ba775bd88842135a4ddb4deb3c9 +md5: a9f577daf3de00bca7c3c76c0ecbd1de +depends: +- __glibc >=2.17,<3.0.a0 +- libgomp >=7.5.0 +constrains: +- openmp_impl <0.0a0 +license: BSD-3-Clause +license_family: BSD +size: 28948 +timestamp: 1770939786096 +- conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda +sha256: a3967b937b9abf0f2a99f3173fa4630293979bd1644709d89580e7c62a544661 +md5: aaa2a381ccc56eac91d63b6c1240312f +depends: +- cpython +- python-gil +license: MIT +license_family: MIT +size: 8191 +timestamp: 1744137672556 +- conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda +sha256: e0ea1ba78fbb64f17062601edda82097fcf815012cf52bb704150a2668110d48 +md5: 2934f256a8acfe48f6ebb4fce6cde29c +depends: +- python >=3.9 +- typing-extensions >=4.0.0 +license: MIT +license_family: MIT +size: 18074 +timestamp: 1733247158254 +- conda: https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda +sha256: 1b6124230bb4e571b1b9401537ecff575b7b109cc3a21ee019f65e083b8399ab +md5: c6b0543676ecb1fb2d7643941fe375f2 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 64927 +timestamp: 1773935801332 +- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.5.0-py314h680f03e_0.conda +noarch: generic +sha256: a1c97297e867776760489537bc5ae36fa83a154be30e3b79385a39ca4cb058fe +md5: 1133126d840e75287d83947be3fc3e71 +depends: +- python >=3.14 +license: BSD-3-Clause AND MIT AND EPL-2.0 +size: 7533 +timestamp: 1778594057496 +- conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.2.0-py314h3de4e8d_1.conda +sha256: 3ad3500bff54a781c29f16ce1b288b36606e2189d0b0ef2f67036554f47f12b0 +md5: 8910d2c46f7e7b519129f486e0fe927a +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libstdcxx >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +constrains: +- libbrotlicommon 1.2.0 hb03c661_1 +license: MIT +license_family: MIT +size: 367376 +timestamp: 1764017265553 +- conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda +sha256: 0b75d45f0bba3e95dc693336fa51f40ea28c980131fec438afb7ce6118ed05f6 +md5: d2ffd7602c02f2b316fd921d39876885 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: bzip2-1.0.6 +license_family: BSD +size: 260182 +timestamp: 1771350215188 +- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.5.20-hbd8a1cb_0.conda +sha256: 9812a303a1395e1dafbd92e5bc8a1ff6013bcbba0a09c7f03a8d23e43560aa9b +md5: 489b8e97e666c93f68fdb35c3c9b957f +depends: +- __unix +license: ISC +size: 129868 +timestamp: 1779289852439 +- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.5.20-pyhd8ed1ab_0.conda +sha256: 645655a3510e38e625da136595f3f16f2130c3263630cc3bc8f60f619ddbe490 +md5: 9fefff2f745ea1cc2ef15211a20c054a +depends: +- python >=3.10 +license: ISC +size: 134201 +timestamp: 1779285131141 +- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.7-pyhd8ed1ab_0.conda +sha256: 3f9483d62ce24ecd063f8a5a714448445dc8d9e201147c46699fc0033e824457 +md5: a9167b9571f3baa9d448faa2139d1089 +depends: +- python >=3.10 +license: MIT +license_family: MIT +size: 58872 +timestamp: 1775127203018 +- conda: https://conda.anaconda.org/conda-forge/noarch/click-8.4.0-pyhc90fa1f_0.conda +sha256: 99ab8ef815c4520cce3a7482c2513f377c14348206857661d84c76a55e030f97 +md5: 003767c47f1f0a474c4de268b57839c3 +depends: +- __unix +- python +- python >=3.10 +license: BSD-3-Clause +license_family: BSD +size: 104631 +timestamp: 1779108494556 +- conda: https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_4.conda +sha256: 8021c76eeadbdd5784b881b165242db9449783e12ce26d6234060026fd6a8680 +md5: b866ff7007b934d564961066c8195983 +depends: +- humanfriendly >=9.1 +- python >=3.9 +license: MIT +license_family: MIT +size: 43758 +timestamp: 1733928076798 +- conda: https://conda.anaconda.org/conda-forge/noarch/colormath-3.0.0-pyhd8ed1ab_4.conda +sha256: 59c9e29800b483b390467f90e82b0da3a4fbf0612efe1c90813fca232780e160 +md5: 071cf7b0ce333c81718b054066c15102 +depends: +- networkx >=2.0 +- numpy +- python >=3.9 +license: BSD-3-Clause +license_family: BSD +size: 39326 +timestamp: 1735759976140 +- conda: https://conda.anaconda.org/conda-forge/noarch/cpython-3.14.5-py314hd8ed1ab_100.conda +noarch: generic +sha256: 777882d2685f368417f31bbe1b28f73687fc6c8f6a5768bda20ffeefa6b07f5b +md5: a749029ce5d0632a913db19d17f944ab +depends: +- python >=3.14,<3.15.0a0 +- python_abi * *_cp314 +license: Python-2.0 +size: 50212 +timestamp: 1779236682725 +- conda: https://conda.anaconda.org/conda-forge/linux-64/expat-2.8.1-hecca717_0.conda +sha256: 29a10599d56d93bd750914888ebe6822d47722070762b4647b34d12df9f4476e +md5: d0757fd84af06f065eba49d39af6c546 +depends: +- __glibc >=2.17,<3.0.a0 +- libexpat 2.8.1 hecca717_0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 148238 +timestamp: 1779278694477 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 +sha256: 58d7f40d2940dd0a8aa28651239adbf5613254df0f75789919c4e6762054403b +md5: 0c96522c6bdaed4b1566d11387caaf45 +license: BSD-3-Clause +license_family: BSD +size: 397370 +timestamp: 1566932522327 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2 +sha256: c52a29fdac682c20d252facc50f01e7c2e7ceac52aa9817aaf0bb83f7559ec5c +md5: 34893075a5c9e55cdafac56607368fc6 +license: OFL-1.1 +license_family: Other +size: 96530 +timestamp: 1620479909603 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2 +sha256: 00925c8c055a2275614b4d983e1df637245e19058d79fc7dd1a93b8d9fb4b139 +md5: 4d59c254e01d9cde7957100457e2d5fb +license: OFL-1.1 +license_family: Other +size: 700814 +timestamp: 1620479612257 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda +sha256: 2821ec1dc454bd8b9a31d0ed22a7ce22422c0aef163c59f49dfdf915d0f0ca14 +md5: 49023d73832ef61042f6a237cb2687e7 +license: LicenseRef-Ubuntu-Font-Licence-Version-1.0 +license_family: Other +size: 1620504 +timestamp: 1727511233259 +- conda: https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.18.0-h27c8c51_0.conda +sha256: e798086d8a65d55dc4c51f5746705639c9a5f2eeb0b8fc50e6152cfc0d69a4e8 +md5: 06965b2f9854d0b15e0443ee81fe83dc +depends: +- __glibc >=2.17,<3.0.a0 +- libexpat >=2.8.1,<3.0a0 +- libfreetype >=2.14.3 +- libfreetype6 >=2.14.3 +- libgcc >=14 +- libuuid >=2.42.1,<3.0a0 +- libzlib >=1.3.2,<2.0a0 +license: MIT +license_family: MIT +size: 280882 +timestamp: 1779421631622 +- conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-hc364b38_1.conda +sha256: 54eea8469786bc2291cc40bca5f46438d3e062a399e8f53f013b6a9f50e98333 +md5: a7970cd949a077b7cb9696379d338681 +depends: +- font-ttf-ubuntu +- font-ttf-inconsolata +- font-ttf-dejavu-sans-mono +- font-ttf-source-code-pro +license: BSD-3-Clause +license_family: BSD +size: 4059 +timestamp: 1762351264405 +- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda +sha256: 84c64443368f84b600bfecc529a1194a3b14c3656ee2e832d15a20e0329b6da3 +md5: 164fc43f0b53b6e3a7bc7dce5e4f1dc9 +depends: +- python >=3.10 +- hyperframe >=6.1,<7 +- hpack >=4.1,<5 +- python +license: MIT +license_family: MIT +size: 95967 +timestamp: 1756364871835 +- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda +sha256: 6ad78a180576c706aabeb5b4c8ceb97c0cb25f1e112d76495bff23e3779948ba +md5: 0a802cb9888dd14eeefc611f05c40b6e +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 30731 +timestamp: 1737618390337 +- conda: https://conda.anaconda.org/conda-forge/noarch/humanfriendly-10.0-pyh707e725_8.conda +sha256: fa2071da7fab758c669e78227e6094f6b3608228740808a6de5d6bce83d9e52d +md5: 7fe569c10905402ed47024fc481bb371 +depends: +- __unix +- python >=3.9 +license: MIT +license_family: MIT +size: 73563 +timestamp: 1733928021866 +- conda: https://conda.anaconda.org/conda-forge/noarch/humanize-4.15.0-pyhd8ed1ab_0.conda +sha256: 6c4343b376d0b12a4c75ab992640970d36c933cad1fd924f6a1181fa91710e80 +md5: daddf757c3ecd6067b9af1df1f25d89e +depends: +- python >=3.10 +license: MIT +license_family: MIT +size: 67994 +timestamp: 1766267728652 +- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda +sha256: 77af6f5fe8b62ca07d09ac60127a30d9069fdc3c68d6b256754d0ffb1f7779f8 +md5: 8e6923fc12f1fe8f8c4e5c9f343256ac +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 17397 +timestamp: 1737618427549 +- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.15-pyhcf101f3_0.conda +sha256: 3d25f9f6f7ab3e1ce6429fc8c8aae0335cf446692e715068488536d220cc43de +md5: 1b9083b7f00609605d1483dbc6071a81 +depends: +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 62642 +timestamp: 1779294335905 +- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-9.0.0-pyhcf101f3_0.conda +sha256: 43e2a5497cad1598ff88a3e69f69bc88b7b8f141fa63c60eab5db296317318b8 +md5: ffc17e785d64e12fc311af9184221839 +depends: +- python >=3.10 +- zipp >=3.20 +- python +license: Apache-2.0 +size: 34766 +timestamp: 1779714582554 +- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda +sha256: fc9ca7348a4f25fed2079f2153ecdcf5f9cf2a0bc36c4172420ca09e1849df7b +md5: 04558c96691bed63104678757beb4f8d +depends: +- markupsafe >=2.0 +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 120685 +timestamp: 1764517220861 +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.26.0-pyhcf101f3_0.conda +sha256: db973a37d75db8e19b5f44bbbdaead0c68dde745407f281e2a7fe4db74ec51d7 +md5: ada41c863af263cc4c5fcbaff7c3e4dc +depends: +- attrs >=22.2.0 +- jsonschema-specifications >=2023.3.6 +- python >=3.10 +- referencing >=0.28.4 +- rpds-py >=0.25.0 +- python +license: MIT +license_family: MIT +size: 82356 +timestamp: 1767839954256 +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2025.9.1-pyhcf101f3_0.conda +sha256: 0a4f3b132f0faca10c89fdf3b60e15abb62ded6fa80aebfc007d05965192aa04 +md5: 439cd0f567d697b20a8f45cb70a1005a +depends: +- python >=3.10 +- referencing >=0.31.0 +- python +license: MIT +license_family: MIT +size: 19236 +timestamp: 1757335715225 +- conda: https://conda.anaconda.org/conda-forge/linux-64/kaleido-core-0.2.1-h3644ca4_0.tar.bz2 +sha256: 7f243680ca03eba7457b7a48f93a9440ba8181a8eac20a3eb5ef165ab6c96664 +md5: b3723b235b0758abaae8c82ce4d80146 +depends: +- __glibc >=2.17,<3.0.a0 +- expat >=2.2.10,<3.0.0a0 +- fontconfig +- fonts-conda-forge +- libgcc-ng >=9.3.0 +- mathjax 2.7.* +- nspr >=4.29,<5.0a0 +- nss >=3.62,<4.0a0 +- sqlite >=3.34.0,<4.0a0 +license: MIT +license_family: MIT +size: 62099926 +timestamp: 1615199463039 +- conda: https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.19.1-h0c24ade_0.conda +sha256: eb89c6c39f2f6a93db55723dbb2f6bba8c8e63e6312bf1abf13e6e9ff45849c8 +md5: f92f984b558e6e6204014b16d212b271 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libjpeg-turbo >=3.1.4.1,<4.0a0 +- libtiff >=4.7.1,<4.8.0a0 +license: MIT +license_family: MIT +size: 251086 +timestamp: 1778079286384 +- conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.45.1-default_hbd61a6d_102.conda +sha256: 3d584956604909ff5df353767f3a2a2f60e07d070b328d109f30ac40cd62df6c +md5: 18335a698559cdbcd86150a48bf54ba6 +depends: +- __glibc >=2.17,<3.0.a0 +- zstd >=1.5.7,<1.6.0a0 +constrains: +- binutils_impl_linux-64 2.45.1 +license: GPL-3.0-only +license_family: GPL +size: 728002 +timestamp: 1774197446916 +- conda: https://conda.anaconda.org/conda-forge/linux-64/lerc-4.1.0-hdb68285_0.conda +sha256: f84cb54782f7e9cea95e810ea8fef186e0652d0fa73d3009914fa2c1262594e1 +md5: a752488c68f2e7c456bcbd8f16eec275 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libstdcxx >=14 +license: Apache-2.0 +license_family: Apache +size: 261513 +timestamp: 1773113328888 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-7_h4a7cf45_openblas.conda +build_number: 7 +sha256: 081c850f99bc355821fac9c6e3727d40b3f8ce3beb50a5437cf03726b611ff39 +md5: 955b44e8b00b7f7ef4ce0130cef12394 +depends: +- libopenblas >=0.3.33,<0.3.34.0a0 +- libopenblas >=0.3.33,<1.0a0 +constrains: +- libcblas 3.11.0 7*_openblas +- blas 2.307 openblas +- liblapack 3.11.0 7*_openblas +- liblapacke 3.11.0 7*_openblas +- mkl <2027 +license: BSD-3-Clause +license_family: BSD +size: 18716 +timestamp: 1778489854108 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-7_h0358290_openblas.conda +build_number: 7 +sha256: 956ae0bb1ec8b0c3663d75b151aceb0521b54e513bf97f621a035f9c87037970 +md5: 0675639dc24cb0032f199e7ff68e4633 +depends: +- libblas 3.11.0 7_h4a7cf45_openblas +constrains: +- liblapacke 3.11.0 7*_openblas +- blas 2.307 openblas +- liblapack 3.11.0 7*_openblas +license: BSD-3-Clause +license_family: BSD +size: 18675 +timestamp: 1778489861559 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda +sha256: aa8e8c4be9a2e81610ddf574e05b64ee131fab5e0e3693210c9d6d2fba32c680 +md5: 6c77a605a7a689d17d4819c0f8ac9a00 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 73490 +timestamp: 1761979956660 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.8.1-hecca717_0.conda +sha256: 363018b25fdb5534c79783d912bd4b685a3547f4fc5996357ad548899b0ee8e7 +md5: 93764a5ca80616e9c10106cdaec92f74 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +constrains: +- expat 2.8.1.* +license: MIT +license_family: MIT +size: 77294 +timestamp: 1779278686680 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.5.2-h3435931_0.conda +sha256: 31f19b6a88ce40ebc0d5a992c131f57d919f73c0b92cd1617a5bec83f6e961e6 +md5: a360c33a5abe61c07959e449fa1453eb +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 58592 +timestamp: 1769456073053 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libfreetype-2.14.3-ha770c72_0.conda +sha256: 38f014a7129e644636e46064ecd6b1945e729c2140e21d75bb476af39e692db2 +md5: e289f3d17880e44b633ba911d57a321b +depends: +- libfreetype6 >=2.14.3 +license: GPL-2.0-only OR FTL +size: 8049 +timestamp: 1774298163029 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libfreetype6-2.14.3-h73754d4_0.conda +sha256: 16f020f96da79db1863fcdd8f2b8f4f7d52f177dd4c58601e38e9182e91adf1d +md5: fb16b4b69e3f1dcfe79d80db8fd0c55d +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libpng >=1.6.55,<1.7.0a0 +- libzlib >=1.3.2,<2.0a0 +constrains: +- freetype >=2.14.3 +license: GPL-2.0-only OR FTL +size: 384575 +timestamp: 1774298162622 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_19.conda +sha256: 8e0a3b5e41272e5678499b5dfc4cddb673f9e935de01eb0767ce857001229f46 +md5: 57736f29cc2b0ec0b6c2952d3f101b6a +depends: +- __glibc >=2.17,<3.0.a0 +- _openmp_mutex >=4.5 +constrains: +- libgcc-ng ==15.2.0=*_19 +- libgomp 15.2.0 he0feb66_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 1041084 +timestamp: 1778269013026 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_19.conda +sha256: 9dcf54adfaa5e861123c2da4f2f0451a685464ea7e5a41ad91cf67b31d658d98 +md5: 331ee9b72b9dff570d56b1302c5ab37d +depends: +- libgcc 15.2.0 he0feb66_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 27694 +timestamp: 1778269016987 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran-15.2.0-h69a702a_19.conda +sha256: 561a42758ef25b9ce308c4e2cf56daee4f06138385a17e29a492cd928e00be6f +md5: 42bf7eca1a951735fa06c0e3c0d5c8e6 +depends: +- libgfortran5 15.2.0 h68bc16d_19 +constrains: +- libgfortran-ng ==15.2.0=*_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 27655 +timestamp: 1778269042954 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-h68bc16d_19.conda +sha256: 057978bb69fea29ed715a9b98adf71015c31baecc4aeb2bfc20d4fd5d83579d4 +md5: 85072b0ad177c966294f129b7c04a2d5 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=15.2.0 +constrains: +- libgfortran 15.2.0 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 2483673 +timestamp: 1778269025089 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_19.conda +sha256: 5abe4ab9d93f6c9757d654f1969ae2267d4505315c1f2f8fe705fd60af084f1b +md5: faac990cb7aedc7f3a2224f2c9b0c26c +depends: +- __glibc >=2.17,<3.0.a0 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 603817 +timestamp: 1778268942614 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.1.4.1-hb03c661_0.conda +sha256: 10056646c28115b174de81a44e23e3a0a3b95b5347d2e6c45cc6d49d35294256 +md5: 6178c6f2fb254558238ef4e6c56fb782 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +constrains: +- jpeg <0.0.0a +license: IJG AND BSD-3-Clause AND Zlib +size: 633831 +timestamp: 1775962768273 +- conda: https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.11.0-7_h47877c9_openblas.conda +build_number: 7 +sha256: 96962084921f197c9ad13fb7f8b324f2351d50ff3d8d962148751ad532f54a01 +md5: 6569b4f273740e25dc0dc7e3232c2a6c +depends: +- libblas 3.11.0 7_h4a7cf45_openblas +constrains: +- liblapacke 3.11.0 7*_openblas +- libcblas 3.11.0 7*_openblas +- blas 2.307 openblas +license: BSD-3-Clause +license_family: BSD +size: 18694 +timestamp: 1778489869038 +- conda: https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.3-hb03c661_0.conda +sha256: ec30e52a3c1bf7d0425380a189d209a52baa03f22fb66dd3eb587acaa765bd6d +md5: b88d90cad08e6bc8ad540cb310a761fb +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +constrains: +- xz 5.8.3.* +license: 0BSD +size: 113478 +timestamp: 1775825492909 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-hb03c661_1.conda +sha256: fe171ed5cf5959993d43ff72de7596e8ac2853e9021dec0344e583734f1e0843 +md5: 2c21e66f50753a083cbe6b80f38268fa +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: BSD-2-Clause +license_family: BSD +size: 92400 +timestamp: 1769482286018 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.33-pthreads_h94d23a6_0.conda +sha256: 3d9aa85648e5e18a6d66db98b8c4317cc426721ad7a220aa86330d1ccedc8903 +md5: 2d3278b721e40468295ca755c3b84070 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libgfortran +- libgfortran5 >=14.3.0 +constrains: +- openblas >=0.3.33,<0.3.34.0a0 +license: BSD-3-Clause +license_family: BSD +size: 5931919 +timestamp: 1776993658641 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.58-h421ea60_0.conda +sha256: 377cfe037f3eeb3b1bf3ad333f724a64d32f315ee1958581fc671891d63d3f89 +md5: eba48a68a1a2b9d3c0d9511548db85db +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libzlib >=1.3.2,<2.0a0 +license: zlib-acknowledgement +size: 317729 +timestamp: 1776315175087 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.53.1-h0c1763c_0.conda +sha256: 54cdcd3214313b62c2a8ee277e6f42150d9b748264c1b70d958bf735e420ef8d +md5: 7dc38adcbf71e6b38748e919e16e0dce +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libzlib >=1.3.2,<2.0a0 +license: blessing +size: 954962 +timestamp: 1777986471789 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_19.conda +sha256: dff1058c76ec6b8759e41cefa2508162d00e4a5e6721aa68ec3fd10094e702dc +md5: 5794b3bdc38177caf969dabd3af08549 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc 15.2.0 he0feb66_19 +constrains: +- libstdcxx-ng ==15.2.0=*_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 5852044 +timestamp: 1778269036376 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.7.1-h9d88235_1.conda +sha256: e5f8c38625aa6d567809733ae04bb71c161a42e44a9fa8227abe61fa5c60ebe0 +md5: cd5a90476766d53e901500df9215e927 +depends: +- __glibc >=2.17,<3.0.a0 +- lerc >=4.0.0,<5.0a0 +- libdeflate >=1.25,<1.26.0a0 +- libgcc >=14 +- libjpeg-turbo >=3.1.0,<4.0a0 +- liblzma >=5.8.1,<6.0a0 +- libstdcxx >=14 +- libwebp-base >=1.6.0,<2.0a0 +- libzlib >=1.3.1,<2.0a0 +- zstd >=1.5.7,<1.6.0a0 +license: HPND +size: 435273 +timestamp: 1762022005702 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.42.1-h5347b49_0.conda +sha256: 3f0edf1280e2f6684a986f821eaa3e123d2694a00b31b96ca0d4a4c12c129231 +md5: 7d0a66598195ef00b6efc55aefc7453b +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: BSD-3-Clause +license_family: BSD +size: 40163 +timestamp: 1779118517630 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.6.0-hd42ef1d_0.conda +sha256: 3aed21ab28eddffdaf7f804f49be7a7d701e8f0e46c856d801270b470820a37b +md5: aea31d2e5b1091feca96fcfe945c3cf9 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +constrains: +- libwebp 1.6.0 +license: BSD-3-Clause +license_family: BSD +size: 429011 +timestamp: 1752159441324 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.17.0-h8a09558_0.conda +sha256: 666c0c431b23c6cec6e492840b176dde533d48b7e6fb8883f5071223433776aa +md5: 92ed62436b625154323d40d5f2f11dd7 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=13 +- pthread-stubs +- xorg-libxau >=1.0.11,<2.0a0 +- xorg-libxdmcp +license: MIT +license_family: MIT +size: 395888 +timestamp: 1727278577118 +- conda: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda +sha256: 55044c403570f0dc26e6364de4dc5368e5f3fc7ff103e867c487e2b5ab2bcda9 +md5: d87ff7921124eccd67248aa483c23fec +depends: +- __glibc >=2.17,<3.0.a0 +constrains: +- zlib 1.3.2 *_2 +license: Zlib +license_family: Other +size: 63629 +timestamp: 1774072609062 +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda +sha256: 20e0892592a3e7c683e3d66df704a9425d731486a97c34fc56af4da1106b2b6b +md5: ba0a9221ce1063f31692c07370d062f3 +depends: +- importlib-metadata >=4.4 +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 85893 +timestamp: 1770694658918 +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.2.0-pyhd8ed1ab_0.conda +sha256: 0c4c35376fe920714390d46e4b8d31c876d65f18e1655899e0763ec25f2a902f +md5: 6d03368f2b2b0a5fb6839df53b2eb5e0 +depends: +- mdurl >=0.1,<1 +- python >=3.10 +license: MIT +license_family: MIT +size: 69017 +timestamp: 1778169663339 +- conda: https://conda.anaconda.org/conda-forge/linux-64/markupsafe-3.0.3-py314h67df5f8_1.conda +sha256: c279be85b59a62d5c52f5dd9a4cd43ebd08933809a8416c22c3131595607d4cf +md5: 9a17c4307d23318476d7fbf0fedc0cde +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +constrains: +- jinja2 >=3.0.0 +license: BSD-3-Clause +license_family: BSD +size: 27424 +timestamp: 1772445227915 +- conda: https://conda.anaconda.org/conda-forge/linux-64/mathjax-2.7.7-ha770c72_3.tar.bz2 +sha256: 02fef69bde69db264a12f21386612262f545b6e3e68d8f1ccec19f3eaae58edf +md5: 86e69bd82c2a2c6fd29f5ab7e02b3691 +license: Apache-2.0 +license_family: Apache +size: 22281629 +timestamp: 1662784498331 +- conda: https://conda.anaconda.org/conda-forge/noarch/mdurl-0.1.2-pyhd8ed1ab_1.conda +sha256: 78c1bbe1723449c52b7a9df1af2ee5f005209f67e40b6e1d3c7619127c43b1c7 +md5: 592132998493b3ff25fd7479396e8351 +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 14465 +timestamp: 1733255681319 +- conda: https://conda.anaconda.org/bioconda/noarch/multiqc-1.35-pyhdfd78af_1.conda +sha256: e86033aa55a9e915e2d0957e770bdb81e3feb26a227d1adb17f9d6c528da6a71 +md5: cdb20309681ba3ce8f52c110e214d4f3 +depends: +- click +- coloredlogs +- humanize +- importlib-metadata +- jinja2 >=3.0.0 +- jsonschema +- markdown +- natsort +- numpy +- packaging +- pillow >=10.2.0 +- plotly >=5.18 +- polars >=1.34.0 +- polars-runtime-compat >=1.34.0 +- pyaml-env +- pydantic >=2.7.1 +- python >=3.9,!=3.14.1 +- python-dotenv +- python-kaleido 0.2.1 +- pyyaml >=4 +- requests +- rich >=10 +- rich-click +- spectra >=0.0.10 +- tiktoken +- tqdm +- typeguard >=4 +license: GPL-3.0-or-later +license_family: GPL3 +size: 4282188 +timestamp: 1779465338806 +- conda: https://conda.anaconda.org/conda-forge/noarch/narwhals-2.21.2-pyhcf101f3_0.conda +sha256: 70f43d62450927d51673eecd8823e14f5b3cfebdb43cda1d502eba97162bab42 +md5: 6687827c332121727ce383919e1ec8c2 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 284323 +timestamp: 1778929680962 +- conda: https://conda.anaconda.org/conda-forge/noarch/natsort-8.4.0-pyhcf101f3_2.conda +sha256: aeb1548eb72e4f198e72f19d242fb695b35add2ac7b2c00e0d83687052867680 +md5: e941e85e273121222580723010bd4fa2 +depends: +- python >=3.9 +- python +license: MIT +license_family: MIT +size: 39262 +timestamp: 1770905275632 +- conda: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.6-hdb14827_0.conda +sha256: fc89f74bbe362fb29fa3c037697a89bec140b346a2469a90f7936d1d7ea4d8a3 +md5: fc21868a1a5aacc937e7a18747acb8a5 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: X11 AND BSD-3-Clause +size: 918956 +timestamp: 1777422145199 +- conda: https://conda.anaconda.org/conda-forge/noarch/networkx-3.6.1-pyhcf101f3_0.conda +sha256: f6a82172afc50e54741f6f84527ef10424326611503c64e359e25a19a8e4c1c6 +md5: a2c1eeadae7a309daed9d62c96012a2b +depends: +- python >=3.11 +- python +constrains: +- numpy >=1.25 +- scipy >=1.11.2 +- matplotlib-base >=3.8 +- pandas >=2.0 +license: BSD-3-Clause +license_family: BSD +size: 1587439 +timestamp: 1765215107045 +- conda: https://conda.anaconda.org/conda-forge/linux-64/nspr-4.38-h29cc59b_0.conda +sha256: e3664264bd936c357523b55c71ed5a30263c6ba278d726a75b1eb112e6fb0b64 +md5: e235d5566c9cc8970eb2798dd4ecf62f +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libstdcxx >=14 +license: MPL-2.0 +license_family: MOZILLA +size: 228588 +timestamp: 1762348634537 +- conda: https://conda.anaconda.org/conda-forge/linux-64/nss-3.118-h445c969_0.conda +sha256: 44dd98ffeac859d84a6dcba79a2096193a42fc10b29b28a5115687a680dd6aea +md5: 567fbeed956c200c1db5782a424e58ee +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libsqlite >=3.51.0,<4.0a0 +- libstdcxx >=14 +- libzlib >=1.3.1,<2.0a0 +- nspr >=4.38,<5.0a0 +license: MPL-2.0 +license_family: MOZILLA +size: 2057773 +timestamp: 1763485556350 +- conda: https://conda.anaconda.org/conda-forge/linux-64/numpy-2.4.6-py314h2b28147_0.conda +sha256: bc61ae892973751a6b0e6ecea57ed6d7053224bddcb007165d6ceb1d7344ad47 +md5: f49b5f950379e0b97c35ca97682f7c6a +depends: +- python +- libstdcxx >=14 +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +- liblapack >=3.9.0,<4.0a0 +- python_abi 3.14.* *_cp314 +- libblas >=3.9.0,<4.0a0 +- libcblas >=3.9.0,<4.0a0 +constrains: +- numpy-base <0a0 +license: BSD-3-Clause +license_family: BSD +size: 8928909 +timestamp: 1779169198391 +- conda: https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.5.4-h55fea9a_0.conda +sha256: 3900f9f2dbbf4129cf3ad6acf4e4b6f7101390b53843591c53b00f034343bc4d +md5: 11b3379b191f63139e29c0d19dee24cd +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libpng >=1.6.50,<1.7.0a0 +- libstdcxx >=14 +- libtiff >=4.7.1,<4.8.0a0 +- libzlib >=1.3.1,<2.0a0 +license: BSD-2-Clause +license_family: BSD +size: 355400 +timestamp: 1758489294972 +- conda: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.2-h35e630c_0.conda +sha256: c0ef482280e38c71a08ad6d71448194b719630345b0c9c60744a2010e8a8e0cb +md5: da1b85b6a87e141f5140bb9924cecab0 +depends: +- __glibc >=2.17,<3.0.a0 +- ca-certificates +- libgcc >=14 +license: Apache-2.0 +license_family: Apache +size: 3167099 +timestamp: 1775587756857 +- conda: https://conda.anaconda.org/conda-forge/noarch/packaging-26.2-pyhc364b38_0.conda +sha256: 3906abfb6511a3bb309e39b9b1b7bc38f50a723971de2395489fd1f379255890 +md5: 4c06a92e74452cfa53623a81592e8934 +depends: +- python >=3.8 +- python +license: Apache-2.0 +license_family: APACHE +size: 91574 +timestamp: 1777103621679 +- conda: https://conda.anaconda.org/conda-forge/linux-64/pillow-12.2.0-py314h8ec4b1a_0.conda +sha256: 123d8a7c16c88658b4f29e9f115a047598c941708dade74fbaff373a32dbec5e +md5: 76c4757c0ec9d11f969e8eb44899307b +depends: +- python +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +- libtiff >=4.7.1,<4.8.0a0 +- openjpeg >=2.5.4,<3.0a0 +- libxcb >=1.17.0,<2.0a0 +- libwebp-base >=1.6.0,<2.0a0 +- zlib-ng >=2.3.3,<2.4.0a0 +- libjpeg-turbo >=3.1.2,<4.0a0 +- python_abi 3.14.* *_cp314 +- libfreetype >=2.14.3 +- libfreetype6 >=2.14.3 +- lcms2 >=2.18,<3.0a0 +- tk >=8.6.13,<8.7.0a0 +license: HPND +size: 1082797 +timestamp: 1775060059882 +- conda: https://conda.anaconda.org/conda-forge/noarch/plotly-6.6.0-pyhd8ed1ab_0.conda +sha256: c418d325359fc7a0074cea7f081ef1bce26e114d2da8a0154c5d27ecc87a08e7 +md5: 3e9427ee186846052e81fadde8ebe96a +depends: +- narwhals >=1.15.1 +- packaging +- python >=3.10 +constrains: +- ipywidgets >=7.6 +license: MIT +license_family: MIT +size: 5251872 +timestamp: 1772628857717 +- conda: https://conda.anaconda.org/conda-forge/noarch/polars-1.41.0-pyh58ad624_0.conda +sha256: 70fc56877c4a095ee658d61924d8019768fbae4a48437058d181fc94b0a7c4d8 +md5: 25a883fed9f1f3f21ff317a3e7c92ac4 +depends: +- polars-runtime-32 ==1.41.0 +- python >=3.10 +- python +constrains: +- numpy >=1.16.0 +- pyarrow >=7.0.0 +- fastexcel >=0.9 +- openpyxl >=3.0.0 +- xlsx2csv >=0.8.0 +- connectorx >=0.3.2 +- deltalake >=1.0.0 +- pyiceberg >=0.7.1 +- altair >=5.4.0 +- great_tables >=0.8.0 +- polars-runtime-32 ==1.41.0 +- polars-runtime-64 ==1.41.0 +- polars-runtime-compat ==1.41.0 +license: MIT +size: 539656 +timestamp: 1779630790562 +- conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-32-1.41.0-py310h49dadd8_0.conda +noarch: python +sha256: e51ee3fe5259f2e115b2f78f8fbe3554e419c7c82b0c110878e12a5ff95ce3ab +md5: 7682765a1588e5ac887c99736d297c93 +depends: +- python +- __glibc >=2.17,<3.0.a0 +- libstdcxx >=14 +- libgcc >=14 +- _python_abi3_support 1.* +- cpython >=3.10 +constrains: +- __glibc >=2.17 +license: MIT +size: 42578921 +timestamp: 1779630790562 +- conda: https://conda.anaconda.org/conda-forge/linux-64/polars-runtime-compat-1.41.0-py310hcbd6021_0.conda +noarch: python +sha256: 29c3831c92394af11d9f7d04882dda9479ffbb76a3d36ba155d52159d67805fa +md5: cb0b620c9914a07a9022cb8b183ea9ee +depends: +- python +- libstdcxx >=14 +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +- _python_abi3_support 1.* +- cpython >=3.10 +constrains: +- __glibc >=2.17 +license: MIT +size: 41864944 +timestamp: 1779630722548 +- conda: https://conda.anaconda.org/conda-forge/linux-64/procps-ng-4.0.6-h18c060e_0.conda +sha256: 4ce2e1ee31a6217998f78c31ce7dc0a3e0557d9238b51d49dd20c52d467a126d +md5: f2c23a77b25efcad57d377b34bd84941 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- ncurses >=6.5,<7.0a0 +license: GPL-2.0-or-later AND LGPL-2.0-or-later +license_family: GPL +size: 593603 +timestamp: 1769710381284 +- conda: https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-hb9d3cd8_1002.conda +sha256: 9c88f8c64590e9567c6c80823f0328e58d3b1efb0e1c539c0315ceca764e0973 +md5: b3c17d95b5a10c6e64a21fa17573e70e +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=13 +license: MIT +license_family: MIT +size: 8252 +timestamp: 1726802366959 +- conda: https://conda.anaconda.org/conda-forge/noarch/pyaml-env-1.2.2-pyhd8ed1ab_0.conda +sha256: 58994e0d2ea8584cb399546e6f6896d771995e6121d1a7b6a2c9948388358932 +md5: e17be1016bcc3516827b836cd3e4d9dc +depends: +- python >=3.9 +- pyyaml >=5.0,<=7.0 +license: MIT +license_family: MIT +size: 14645 +timestamp: 1736766960536 +- conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.13.4-pyhcf101f3_0.conda +sha256: 69700e31165df070e9716315e042196aa92525dae5deb5107785847ab9f4189f +md5: 729843edafc0899b3348bd3f19525b9d +depends: +- typing-inspection >=0.4.2 +- typing_extensions >=4.14.1 +- python >=3.10 +- annotated-types >=0.6.0 +- pydantic-core ==2.46.4 +- python +license: MIT +license_family: MIT +size: 346511 +timestamp: 1778103405862 +- conda: https://conda.anaconda.org/conda-forge/linux-64/pydantic-core-2.46.4-py314h2e6c369_0.conda +sha256: 802e216c39f1359aed60823b6e11d8ccd812b0ae1c81ae5ac1c81f99446409ab +md5: 0c96993dbeadf3a277cf757b9f1c9412 +depends: +- python +- typing-extensions >=4.6.0,!=4.7.0 +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +- python_abi 3.14.* *_cp314 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 1895020 +timestamp: 1778084229247 +- conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.20.0-pyhd8ed1ab_0.conda +sha256: cf70b2f5ad9ae472b71235e5c8a736c9316df3705746de419b59d442e8348e86 +md5: 16c18772b340887160c79a6acc022db0 +depends: +- python >=3.10 +license: BSD-2-Clause +license_family: BSD +size: 893031 +timestamp: 1774796815820 +- conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda +sha256: ba3b032fa52709ce0d9fd388f63d330a026754587a2f461117cac9ab73d8d0d8 +md5: 461219d1a5bd61342293efa2c0c90eac +depends: +- __unix +- python >=3.9 +license: BSD-3-Clause +license_family: BSD +size: 21085 +timestamp: 1733217331982 +- conda: https://conda.anaconda.org/conda-forge/linux-64/python-3.14.5-habeac84_100_cp314.conda +build_number: 100 +sha256: 55eed9bf2a3f6e90311276f0834737fe7c2d9ec3e5e2e557507858df4c7521e6 +md5: da92e59ff92f2d5ede4f612af20f583f +depends: +- __glibc >=2.17,<3.0.a0 +- bzip2 >=1.0.8,<2.0a0 +- ld_impl_linux-64 >=2.36.1 +- libexpat >=2.8.0,<3.0a0 +- libffi >=3.5.2,<3.6.0a0 +- libgcc >=14 +- liblzma >=5.8.3,<6.0a0 +- libmpdec >=4.0.0,<5.0a0 +- libsqlite >=3.53.1,<4.0a0 +- libuuid >=2.42.1,<3.0a0 +- libzlib >=1.3.2,<2.0a0 +- ncurses >=6.6,<7.0a0 +- openssl >=3.5.6,<4.0a0 +- python_abi 3.14.* *_cp314 +- readline >=8.3,<9.0a0 +- tk >=8.6.13,<8.7.0a0 +- tzdata +- zstd >=1.5.7,<1.6.0a0 +license: Python-2.0 +size: 36745188 +timestamp: 1779236923603 +python_site_packages_path: lib/python3.14/site-packages +- conda: https://conda.anaconda.org/conda-forge/noarch/python-dotenv-1.2.2-pyhcf101f3_0.conda +sha256: 74e417a768f59f02a242c25e7db0aa796627b5bc8c818863b57786072aeb85e5 +md5: 130584ad9f3a513cdd71b1fdc1244e9c +depends: +- python >=3.10 +license: BSD-3-Clause +license_family: BSD +size: 27848 +timestamp: 1772388605021 +- conda: https://conda.anaconda.org/conda-forge/noarch/python-gil-3.14.5-h4df99d1_100.conda +sha256: 41dd7da285d71d519257fa7dacb1cae060d5ebfaa5f92cba5994899d2978e943 +md5: 41954747ba952ec4b01e16c2c9e8d8ff +depends: +- cpython 3.14.5.* +- python_abi * *_cp314 +license: Python-2.0 +size: 50212 +timestamp: 1779236703009 +- conda: https://conda.anaconda.org/conda-forge/noarch/python-kaleido-0.2.1-pyhd8ed1ab_0.tar.bz2 +sha256: e17bf63a30aec33432f1ead86e15e9febde9fc40a7f869c0e766be8d2db44170 +md5: 310259a5b03ff02289d7705f39e2b1d2 +depends: +- kaleido-core 0.2.1.* +- python >=3.5 +license: MIT +license_family: MIT +size: 18320 +timestamp: 1615204747600 +- conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda +build_number: 8 +sha256: ad6d2e9ac39751cc0529dd1566a26751a0bf2542adb0c232533d32e176e21db5 +md5: 0539938c55b6b1a59b560e843ad864a4 +constrains: +- python 3.14.* *_cp314 +license: BSD-3-Clause +license_family: BSD +size: 6989 +timestamp: 1752805904792 +- conda: https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.3-py314h67df5f8_1.conda +sha256: b318fb070c7a1f89980ef124b80a0b5ccf3928143708a85e0053cde0169c699d +md5: 2035f68f96be30dc60a5dfd7452c7941 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +- yaml >=0.2.5,<0.3.0a0 +license: MIT +license_family: MIT +size: 202391 +timestamp: 1770223462836 +- conda: https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda +sha256: 12ffde5a6f958e285aa22c191ca01bbd3d6e710aa852e00618fa6ddc59149002 +md5: d7d95fc8287ea7bf33e0e7116d2b95ec +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- ncurses >=6.5,<7.0a0 +license: GPL-3.0-only +license_family: GPL +size: 345073 +timestamp: 1765813471974 +- conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda +sha256: 0577eedfb347ff94d0f2fa6c052c502989b028216996b45c7f21236f25864414 +md5: 870293df500ca7e18bedefa5838a22ab +depends: +- attrs >=22.2.0 +- python >=3.10 +- rpds-py >=0.7.0 +- typing_extensions >=4.4.0 +- python +license: MIT +license_family: MIT +size: 51788 +timestamp: 1760379115194 +- conda: https://conda.anaconda.org/conda-forge/linux-64/regex-2026.5.9-py314h5bd0f2a_0.conda +sha256: c7a4aca4977c15c82d053b06cbc676460974c1b25757cfeea8a9a2497ac911f8 +md5: 9dd235b6ac69a0198080dac39f9891aa +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +license: Apache-2.0 AND CNRI-Python +license_family: PSF +size: 413611 +timestamp: 1778374155646 +- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.2-pyhcf101f3_0.conda +sha256: 1715246b19c9f85ee022933b4845f2fc14ac9184981b7b7d9b728bec8e9588da +md5: 4a85203c1d80c1059086ae860836ffb9 +depends: +- python >=3.10 +- certifi >=2023.5.7 +- charset-normalizer >=2,<4 +- idna >=2.5,<4 +- urllib3 >=1.26,<3 +- python +constrains: +- chardet >=3.0.2,<8 +license: Apache-2.0 +license_family: APACHE +size: 68709 +timestamp: 1778851103479 +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda +sha256: 3d6ba2c0fcdac3196ba2f0615b4104e532525ffa1335b50a2878be5ff488814a +md5: 0242025a3c804966bf71aa04eee82f66 +depends: +- markdown-it-py >=2.2.0 +- pygments >=2.13.0,<3.0.0 +- python >=3.10 +- typing_extensions >=4.0.0,<5.0.0 +- python +license: MIT +license_family: MIT +size: 208577 +timestamp: 1775991661559 +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-click-1.9.7-pyh8f84b5b_0.conda +sha256: aa3fcb167321bae51998de2e94d199109c9024f25a5a063cb1c28d8f1af33436 +md5: 0c20a8ebcddb24a45da89d5e917e6cb9 +depends: +- python >=3.10 +- rich >=12 +- click >=8 +- typing-extensions >=4 +- __unix +- python +license: MIT +license_family: MIT +size: 64356 +timestamp: 1769850479089 +- conda: https://conda.anaconda.org/conda-forge/linux-64/rpds-py-0.30.0-py314h2e6c369_0.conda +sha256: e53b0cbf3b324eaa03ca1fe1a688fdf4ab42cea9c25270b0a7307d8aaaa4f446 +md5: c1c368b5437b0d1a68f372ccf01cb133 +depends: +- python +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +- python_abi 3.14.* *_cp314 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 376121 +timestamp: 1764543122774 +- conda: https://conda.anaconda.org/conda-forge/noarch/spectra-0.0.11-pyhd8ed1ab_2.conda +sha256: 7c65782d2511738e62c70462e89d65da4fa54d5a7e47c46667bcd27a59f81876 +md5: 472239e4eb7b5a84bb96b3ed7e3a596a +depends: +- colormath >=3.0.0 +- python >=3.9 +license: MIT +license_family: MIT +size: 22284 +timestamp: 1735770589188 +- conda: https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.53.1-hbc0de68_0.conda +sha256: d167fa92781bcdcd3b9aaa6bb1cd50c5b108f6190c170098a118b5cf5df2f881 +md5: 8e0b8654ead18e50af552e54b5a08a61 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libsqlite 3.53.1 h0c1763c_0 +- libzlib >=1.3.2,<2.0a0 +- ncurses >=6.6,<7.0a0 +- readline >=8.3,<9.0a0 +license: blessing +size: 205399 +timestamp: 1777986477546 +- conda: https://conda.anaconda.org/conda-forge/linux-64/tiktoken-0.12.0-py314h67fec18_3.conda +sha256: 7e395d67fd249d901beb1ae269057763c0d8c3ee5f7a348694bdb16d158a37d9 +md5: d705f9d8a1185a2b01cced191177a028 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libstdcxx >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +- regex >=2022.1.18 +- requests >=2.26.0 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 939648 +timestamp: 1764028306357 +- conda: https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.13-noxft_h366c992_103.conda +sha256: cafeec44494f842ffeca27e9c8b0c27ed714f93ac77ddadc6aaf726b5554ebac +md5: cffd3bdd58090148f4cfcd831f4b26ab +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libzlib >=1.3.1,<2.0a0 +constrains: +- xorg-libx11 >=1.8.12,<2.0a0 +license: TCL +license_family: BSD +size: 3301196 +timestamp: 1769460227866 +- conda: https://conda.anaconda.org/conda-forge/noarch/tqdm-4.67.3-pyh8f84b5b_0.conda +sha256: 9ef8e47cf00e4d6dcc114eb32a1504cc18206300572ef14d76634ba29dfe1eb6 +md5: e5ce43272193b38c2e9037446c1d9206 +depends: +- python >=3.10 +- __unix +- python +license: MPL-2.0 and MIT +size: 94132 +timestamp: 1770153424136 +- conda: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.5.2-pyhcf101f3_0.conda +sha256: 59d7851d32fddb5b510272e6557aa982edeb927d349648dac27f5bf01d18bb26 +md5: 4460f039b7dedf15f7df086446ca75ae +depends: +- typing_extensions >=4.14.0 +- python >=3.10 +- importlib-metadata >=3.6 +- python +constrains: +- pytest >=7 +license: MIT +license_family: MIT +size: 38297 +timestamp: 1778779291237 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda +sha256: 7c2df5721c742c2a47b2c8f960e718c930031663ac1174da67c1ed5999f7938c +md5: edd329d7d3a4ab45dcf905899a7a6115 +depends: +- typing_extensions ==4.15.0 pyhcf101f3_0 +license: PSF-2.0 +license_family: PSF +size: 91383 +timestamp: 1756220668932 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda +sha256: 8b90d2f19f9458b8c58a55e1fcdc1d90c1603a847a47654d8a454549413ba60a +md5: 53f5409c5cfd6c5a66417d68e3f0a864 +depends: +- python >=3.10 +- typing_extensions >=4.12.0 +- python +license: MIT +license_family: MIT +size: 20935 +timestamp: 1777105465795 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda +sha256: 032271135bca55aeb156cee361c81350c6f3fb203f57d024d7e5a1fc9ef18731 +md5: 0caa1af407ecff61170c9437a808404d +depends: +- python >=3.10 +- python +license: PSF-2.0 +license_family: PSF +size: 51692 +timestamp: 1756220668932 +- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda +sha256: 1d30098909076af33a35017eed6f2953af1c769e273a0626a04722ac4acaba3c +md5: ad659d0a2b3e47e38d829aa8cad2d610 +license: LicenseRef-Public-Domain +size: 119135 +timestamp: 1767016325805 +- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.7.0-pyhd8ed1ab_0.conda +sha256: feff959a816f7988a0893201aa9727bbb7ee1e9cec2c4f0428269b489eb93fb4 +md5: cbb88288f74dbe6ada1c6c7d0a97223e +depends: +- backports.zstd >=1.0.0 +- brotli-python >=1.2.0 +- h2 >=4,<5 +- pysocks >=1.5.6,<2.0,!=1.5.7 +- python >=3.10 +license: MIT +license_family: MIT +size: 103560 +timestamp: 1778188657149 +- conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.12-hb03c661_1.conda +sha256: 6bc6ab7a90a5d8ac94c7e300cc10beb0500eeba4b99822768ca2f2ef356f731b +md5: b2895afaf55bf96a8c8282a2e47a5de0 +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 15321 +timestamp: 1762976464266 +- conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.5-hb03c661_1.conda +sha256: 25d255fb2eef929d21ff660a0c687d38a6d2ccfbcbf0cc6aa738b12af6e9d142 +md5: 1dafce8548e38671bea82e3f5c6ce22f +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 20591 +timestamp: 1762976546182 +- conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h280c20c_3.conda +sha256: 6d9ea2f731e284e9316d95fa61869fe7bbba33df7929f82693c121022810f4ad +md5: a77f85f77be52ff59391544bfe73390a +depends: +- libgcc >=14 +- __glibc >=2.17,<3.0.a0 +license: MIT +license_family: MIT +size: 85189 +timestamp: 1753484064210 +- conda: https://conda.anaconda.org/conda-forge/noarch/zipp-4.1.0-pyhcf101f3_0.conda +sha256: 210bd31c22bb88f5e2a167df24c95bb5f152b2ada7502f9b8c49d1f5366db423 +md5: ba3dcdc8584155c97c648ae9c044b7a3 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 24190 +timestamp: 1779159948016 +- conda: https://conda.anaconda.org/conda-forge/linux-64/zlib-ng-2.3.3-hceb46e0_1.conda +sha256: ea4e50c465d70236408cb0bfe0115609fd14db1adcd8bd30d8918e0291f8a75f +md5: 2aadb0d17215603a82a2a6b0afd9a4cb +depends: +- __glibc >=2.17,<3.0.a0 +- libgcc >=14 +- libstdcxx >=14 +license: Zlib +license_family: Other +size: 122618 +timestamp: 1770167931827 +- conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda +sha256: 68f0206ca6e98fea941e5717cec780ed2873ffabc0e1ed34428c061e2c6268c7 +md5: 4a13eeac0b5c8e5b8ab496e6c4ddd829 +depends: +- __glibc >=2.17,<3.0.a0 +- libzlib >=1.3.1,<2.0a0 +license: BSD-3-Clause +license_family: BSD +size: 601375 +timestamp: 1764777111296 diff --git a/modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt b/modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt new file mode 100644 index 00000000..3d5b93db --- /dev/null +++ b/modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt @@ -0,0 +1,1476 @@ + +version: 6 +environments: +default: +channels: +- url: https://conda.anaconda.org/conda-forge/ +- url: https://conda.anaconda.org/bioconda/ +- url: https://conda.anaconda.org/bioconda/ +options: +pypi-prerelease-mode: if-necessary-or-explicit +packages: +linux-aarch64: +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/_openmp_mutex-4.5-20_gnu.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.5.0-py314h680f03e_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/brotli-python-1.2.0-py314h352cb57_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/bzip2-1.0.8-h4777abc_9.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.5.20-hbd8a1cb_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.5.20-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.7-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/click-8.4.0-pyhc90fa1f_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_4.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/colormath-3.0.0-pyhd8ed1ab_4.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/cpython-3.14.5-py314hd8ed1ab_100.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/expat-2.8.1-hfae3067_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/fontconfig-2.18.0-hba86a56_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-hc364b38_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/humanfriendly-10.0-pyh707e725_8.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/humanize-4.15.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.15-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-9.0.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.26.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2025.9.1-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/kaleido-core-0.2.1-he5a581e_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/lcms2-2.19.1-h9d5b58d_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/ld_impl_linux-aarch64-2.45.1-default_h1979696_102.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/lerc-4.1.0-h52b7260_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libblas-3.11.0-7_haddc8a3_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libcblas-3.11.0-7_hd72aa62_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libdeflate-1.25-h1af38f5_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libexpat-2.8.1-hfae3067_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libffi-3.5.2-h376a255_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libfreetype-2.14.3-h8af1aa0_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libfreetype6-2.14.3-hdae7a39_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgcc-15.2.0-h8acb6b2_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgcc-ng-15.2.0-he9431aa_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgfortran-15.2.0-he9431aa_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgfortran5-15.2.0-h1b7bec0_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgomp-15.2.0-h8acb6b2_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libjpeg-turbo-3.1.4.1-he30d5cf_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/liblapack-3.11.0-7_h88aeb00_openblas.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/liblzma-5.8.3-he30d5cf_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libmpdec-4.0.0-he30d5cf_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libopenblas-0.3.33-pthreads_h9d3fd7e_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libpng-1.6.58-h1abf092_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libsqlite-3.53.1-h022381a_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libstdcxx-15.2.0-hef695bb_19.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libtiff-4.7.1-hdb009f0_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libuuid-2.42.1-h1022ec0_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libwebp-base-1.6.0-ha2e29f5_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libxcb-1.17.0-h262b8f6_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libzlib-1.3.2-hdc9db2a_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.2.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/markupsafe-3.0.3-py314hb76de3f_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/mathjax-2.7.7-h8af1aa0_3.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/mdurl-0.1.2-pyhd8ed1ab_1.conda +- conda: https://conda.anaconda.org/bioconda/noarch/multiqc-1.35-pyhdfd78af_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/narwhals-2.21.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/natsort-8.4.0-pyhcf101f3_2.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/ncurses-6.6-hf8d1292_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/networkx-3.6.1-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/nspr-4.38-h3ad9384_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/nss-3.118-h544fa81_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/numpy-2.4.6-py314he1698a1_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/openjpeg-2.5.4-h5da879a_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/openssl-3.6.2-h546c87b_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/packaging-26.2-pyhc364b38_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pillow-12.2.0-py314hac3e5ec_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/plotly-6.6.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/polars-1.41.0-pyh58ad624_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/polars-runtime-32-1.41.0-py310h32c7c23_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/polars-runtime-compat-1.41.0-py310hc0e61be_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/procps-ng-4.0.6-h1779866_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pthread-stubs-0.4-h86ecc28_1002.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pyaml-env-1.2.2-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.13.4-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pydantic-core-2.46.4-py314h451b6cc_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.20.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/python-3.14.5-hfd9ac0a_100_cp314.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-dotenv-1.2.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-gil-3.14.5-h4df99d1_100.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/python-kaleido-0.2.1-pyhd8ed1ab_0.tar.bz2 +- conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pyyaml-6.0.3-py314h807365f_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/readline-8.3-hb682ff5_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/regex-2026.5.9-py314h51f160d_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-click-1.9.7-pyh8f84b5b_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/rpds-py-0.30.0-py314h02b7a91_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/spectra-0.0.11-pyhd8ed1ab_2.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/sqlite-3.53.1-he8854b5_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/tiktoken-0.12.0-py314h6a36e60_3.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/tk-8.6.13-noxft_h0dc03b3_103.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/tqdm-4.67.3-pyh8f84b5b_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.5.2-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.7.0-pyhd8ed1ab_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/xorg-libxau-1.0.12-he30d5cf_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/xorg-libxdmcp-1.1.5-he30d5cf_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/yaml-0.2.5-h80f16a2_3.conda +- conda: https://conda.anaconda.org/conda-forge/noarch/zipp-4.1.0-pyhcf101f3_0.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-ng-2.3.3-ha7cb516_1.conda +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/zstd-1.5.7-h85ac4a6_6.conda +packages: +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/_openmp_mutex-4.5-20_gnu.conda +build_number: 20 +sha256: a2527b1d81792a0ccd2c05850960df119c2b6d8f5fdec97f2db7d25dc23b1068 +md5: 468fd3bb9e1f671d36c2cbc677e56f1d +depends: +- libgomp >=7.5.0 +constrains: +- openmp_impl <0.0a0 +license: BSD-3-Clause +license_family: BSD +size: 28926 +timestamp: 1770939656741 +- conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda +sha256: a3967b937b9abf0f2a99f3173fa4630293979bd1644709d89580e7c62a544661 +md5: aaa2a381ccc56eac91d63b6c1240312f +depends: +- cpython +- python-gil +license: MIT +license_family: MIT +size: 8191 +timestamp: 1744137672556 +- conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda +sha256: e0ea1ba78fbb64f17062601edda82097fcf815012cf52bb704150a2668110d48 +md5: 2934f256a8acfe48f6ebb4fce6cde29c +depends: +- python >=3.9 +- typing-extensions >=4.0.0 +license: MIT +license_family: MIT +size: 18074 +timestamp: 1733247158254 +- conda: https://conda.anaconda.org/conda-forge/noarch/attrs-26.1.0-pyhcf101f3_0.conda +sha256: 1b6124230bb4e571b1b9401537ecff575b7b109cc3a21ee019f65e083b8399ab +md5: c6b0543676ecb1fb2d7643941fe375f2 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 64927 +timestamp: 1773935801332 +- conda: https://conda.anaconda.org/conda-forge/noarch/backports.zstd-1.5.0-py314h680f03e_0.conda +noarch: generic +sha256: a1c97297e867776760489537bc5ae36fa83a154be30e3b79385a39ca4cb058fe +md5: 1133126d840e75287d83947be3fc3e71 +depends: +- python >=3.14 +license: BSD-3-Clause AND MIT AND EPL-2.0 +size: 7533 +timestamp: 1778594057496 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/brotli-python-1.2.0-py314h352cb57_1.conda +sha256: 5a5b0cdcd7ed89c6a8fb830924967f6314a2b71944bc1ebc2c105781ba97aa75 +md5: a1b5c571a0923a205d663d8678df4792 +depends: +- libgcc >=14 +- libstdcxx >=14 +- python >=3.14,<3.15.0a0 +- python >=3.14,<3.15.0a0 *_cp314 +- python_abi 3.14.* *_cp314 +constrains: +- libbrotlicommon 1.2.0 he30d5cf_1 +license: MIT +license_family: MIT +size: 373193 +timestamp: 1764017486851 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/bzip2-1.0.8-h4777abc_9.conda +sha256: b3495077889dde6bb370938e7db82be545c73e8589696ad0843a32221520ad4c +md5: 840d8fc0d7b3209be93080bc20e07f2d +depends: +- libgcc >=14 +license: bzip2-1.0.6 +license_family: BSD +size: 192412 +timestamp: 1771350241232 +- conda: https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.5.20-hbd8a1cb_0.conda +sha256: 9812a303a1395e1dafbd92e5bc8a1ff6013bcbba0a09c7f03a8d23e43560aa9b +md5: 489b8e97e666c93f68fdb35c3c9b957f +depends: +- __unix +license: ISC +size: 129868 +timestamp: 1779289852439 +- conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2026.5.20-pyhd8ed1ab_0.conda +sha256: 645655a3510e38e625da136595f3f16f2130c3263630cc3bc8f60f619ddbe490 +md5: 9fefff2f745ea1cc2ef15211a20c054a +depends: +- python >=3.10 +license: ISC +size: 134201 +timestamp: 1779285131141 +- conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.4.7-pyhd8ed1ab_0.conda +sha256: 3f9483d62ce24ecd063f8a5a714448445dc8d9e201147c46699fc0033e824457 +md5: a9167b9571f3baa9d448faa2139d1089 +depends: +- python >=3.10 +license: MIT +license_family: MIT +size: 58872 +timestamp: 1775127203018 +- conda: https://conda.anaconda.org/conda-forge/noarch/click-8.4.0-pyhc90fa1f_0.conda +sha256: 99ab8ef815c4520cce3a7482c2513f377c14348206857661d84c76a55e030f97 +md5: 003767c47f1f0a474c4de268b57839c3 +depends: +- __unix +- python +- python >=3.10 +license: BSD-3-Clause +license_family: BSD +size: 104631 +timestamp: 1779108494556 +- conda: https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_4.conda +sha256: 8021c76eeadbdd5784b881b165242db9449783e12ce26d6234060026fd6a8680 +md5: b866ff7007b934d564961066c8195983 +depends: +- humanfriendly >=9.1 +- python >=3.9 +license: MIT +license_family: MIT +size: 43758 +timestamp: 1733928076798 +- conda: https://conda.anaconda.org/conda-forge/noarch/colormath-3.0.0-pyhd8ed1ab_4.conda +sha256: 59c9e29800b483b390467f90e82b0da3a4fbf0612efe1c90813fca232780e160 +md5: 071cf7b0ce333c81718b054066c15102 +depends: +- networkx >=2.0 +- numpy +- python >=3.9 +license: BSD-3-Clause +license_family: BSD +size: 39326 +timestamp: 1735759976140 +- conda: https://conda.anaconda.org/conda-forge/noarch/cpython-3.14.5-py314hd8ed1ab_100.conda +noarch: generic +sha256: 777882d2685f368417f31bbe1b28f73687fc6c8f6a5768bda20ffeefa6b07f5b +md5: a749029ce5d0632a913db19d17f944ab +depends: +- python >=3.14,<3.15.0a0 +- python_abi * *_cp314 +license: Python-2.0 +size: 50212 +timestamp: 1779236682725 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/expat-2.8.1-hfae3067_0.conda +sha256: a9cd5eb1700e11cc39acc36630a2d72a4e317943bd7c5695cd8804419f04ff42 +md5: 89f0247b3cea528d8ad1a6664a313153 +depends: +- libexpat 2.8.1 hfae3067_0 +- libgcc >=14 +license: MIT +license_family: MIT +size: 140114 +timestamp: 1779278679081 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 +sha256: 58d7f40d2940dd0a8aa28651239adbf5613254df0f75789919c4e6762054403b +md5: 0c96522c6bdaed4b1566d11387caaf45 +license: BSD-3-Clause +license_family: BSD +size: 397370 +timestamp: 1566932522327 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2 +sha256: c52a29fdac682c20d252facc50f01e7c2e7ceac52aa9817aaf0bb83f7559ec5c +md5: 34893075a5c9e55cdafac56607368fc6 +license: OFL-1.1 +license_family: Other +size: 96530 +timestamp: 1620479909603 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2 +sha256: 00925c8c055a2275614b4d983e1df637245e19058d79fc7dd1a93b8d9fb4b139 +md5: 4d59c254e01d9cde7957100457e2d5fb +license: OFL-1.1 +license_family: Other +size: 700814 +timestamp: 1620479612257 +- conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_3.conda +sha256: 2821ec1dc454bd8b9a31d0ed22a7ce22422c0aef163c59f49dfdf915d0f0ca14 +md5: 49023d73832ef61042f6a237cb2687e7 +license: LicenseRef-Ubuntu-Font-Licence-Version-1.0 +license_family: Other +size: 1620504 +timestamp: 1727511233259 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/fontconfig-2.18.0-hba86a56_0.conda +sha256: 1805f4ab3d9e1734a5a17abccc2cb0fdade51d4d5f29bdc410600ea0115ec050 +md5: b660d59a9d0fb3297327418624acaec3 +depends: +- libexpat >=2.8.1,<3.0a0 +- libfreetype >=2.14.3 +- libfreetype6 >=2.14.3 +- libgcc >=14 +- libuuid >=2.42.1,<3.0a0 +- libzlib >=1.3.2,<2.0a0 +license: MIT +license_family: MIT +size: 293348 +timestamp: 1779421661332 +- conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-hc364b38_1.conda +sha256: 54eea8469786bc2291cc40bca5f46438d3e062a399e8f53f013b6a9f50e98333 +md5: a7970cd949a077b7cb9696379d338681 +depends: +- font-ttf-ubuntu +- font-ttf-inconsolata +- font-ttf-dejavu-sans-mono +- font-ttf-source-code-pro +license: BSD-3-Clause +license_family: BSD +size: 4059 +timestamp: 1762351264405 +- conda: https://conda.anaconda.org/conda-forge/noarch/h2-4.3.0-pyhcf101f3_0.conda +sha256: 84c64443368f84b600bfecc529a1194a3b14c3656ee2e832d15a20e0329b6da3 +md5: 164fc43f0b53b6e3a7bc7dce5e4f1dc9 +depends: +- python >=3.10 +- hyperframe >=6.1,<7 +- hpack >=4.1,<5 +- python +license: MIT +license_family: MIT +size: 95967 +timestamp: 1756364871835 +- conda: https://conda.anaconda.org/conda-forge/noarch/hpack-4.1.0-pyhd8ed1ab_0.conda +sha256: 6ad78a180576c706aabeb5b4c8ceb97c0cb25f1e112d76495bff23e3779948ba +md5: 0a802cb9888dd14eeefc611f05c40b6e +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 30731 +timestamp: 1737618390337 +- conda: https://conda.anaconda.org/conda-forge/noarch/humanfriendly-10.0-pyh707e725_8.conda +sha256: fa2071da7fab758c669e78227e6094f6b3608228740808a6de5d6bce83d9e52d +md5: 7fe569c10905402ed47024fc481bb371 +depends: +- __unix +- python >=3.9 +license: MIT +license_family: MIT +size: 73563 +timestamp: 1733928021866 +- conda: https://conda.anaconda.org/conda-forge/noarch/humanize-4.15.0-pyhd8ed1ab_0.conda +sha256: 6c4343b376d0b12a4c75ab992640970d36c933cad1fd924f6a1181fa91710e80 +md5: daddf757c3ecd6067b9af1df1f25d89e +depends: +- python >=3.10 +license: MIT +license_family: MIT +size: 67994 +timestamp: 1766267728652 +- conda: https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.1.0-pyhd8ed1ab_0.conda +sha256: 77af6f5fe8b62ca07d09ac60127a30d9069fdc3c68d6b256754d0ffb1f7779f8 +md5: 8e6923fc12f1fe8f8c4e5c9f343256ac +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 17397 +timestamp: 1737618427549 +- conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.15-pyhcf101f3_0.conda +sha256: 3d25f9f6f7ab3e1ce6429fc8c8aae0335cf446692e715068488536d220cc43de +md5: 1b9083b7f00609605d1483dbc6071a81 +depends: +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 62642 +timestamp: 1779294335905 +- conda: https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-9.0.0-pyhcf101f3_0.conda +sha256: 43e2a5497cad1598ff88a3e69f69bc88b7b8f141fa63c60eab5db296317318b8 +md5: ffc17e785d64e12fc311af9184221839 +depends: +- python >=3.10 +- zipp >=3.20 +- python +license: Apache-2.0 +size: 34766 +timestamp: 1779714582554 +- conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.6-pyhcf101f3_1.conda +sha256: fc9ca7348a4f25fed2079f2153ecdcf5f9cf2a0bc36c4172420ca09e1849df7b +md5: 04558c96691bed63104678757beb4f8d +depends: +- markupsafe >=2.0 +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 120685 +timestamp: 1764517220861 +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.26.0-pyhcf101f3_0.conda +sha256: db973a37d75db8e19b5f44bbbdaead0c68dde745407f281e2a7fe4db74ec51d7 +md5: ada41c863af263cc4c5fcbaff7c3e4dc +depends: +- attrs >=22.2.0 +- jsonschema-specifications >=2023.3.6 +- python >=3.10 +- referencing >=0.28.4 +- rpds-py >=0.25.0 +- python +license: MIT +license_family: MIT +size: 82356 +timestamp: 1767839954256 +- conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2025.9.1-pyhcf101f3_0.conda +sha256: 0a4f3b132f0faca10c89fdf3b60e15abb62ded6fa80aebfc007d05965192aa04 +md5: 439cd0f567d697b20a8f45cb70a1005a +depends: +- python >=3.10 +- referencing >=0.31.0 +- python +license: MIT +license_family: MIT +size: 19236 +timestamp: 1757335715225 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/kaleido-core-0.2.1-he5a581e_0.tar.bz2 +sha256: d3c7f4797566e6f983d16c2a87063a18e4b2d819a66230190a21584d70042755 +md5: 4f0d284f5d11e04277b552eb1c172c7f +depends: +- __glibc >=2.17,<3.0.a0 +- expat >=2.2.10,<3.0.0a0 +- fontconfig +- fonts-conda-forge +- libgcc-ng >=9.3.0 +- mathjax 2.7.* +- nspr >=4.29,<5.0a0 +- nss >=3.62,<4.0a0 +- sqlite >=3.34.0,<4.0a0 +license: MIT +license_family: MIT +size: 65750397 +timestamp: 1615199465742 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/lcms2-2.19.1-h9d5b58d_0.conda +sha256: 1e5f68e4b36a0e1a278c6dc026bc3d7775518a15832cbc9d7fc1c0e4c47784b1 +md5: b1f8bee3c53a6d2c103fb4a1ae44f5c4 +depends: +- libgcc >=14 +- libjpeg-turbo >=3.1.4.1,<4.0a0 +- libtiff >=4.7.1,<4.8.0a0 +license: MIT +license_family: MIT +size: 296899 +timestamp: 1778079402392 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/ld_impl_linux-aarch64-2.45.1-default_h1979696_102.conda +sha256: 7abd913d81a9bf00abb699e8987966baa2065f5132e37e815f92d90fc6bba530 +md5: a21644fc4a83da26452a718dc9468d5f +depends: +- zstd >=1.5.7,<1.6.0a0 +constrains: +- binutils_impl_linux-aarch64 2.45.1 +license: GPL-3.0-only +license_family: GPL +size: 875596 +timestamp: 1774197520746 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/lerc-4.1.0-h52b7260_0.conda +sha256: 8957fd460c1c132c8031f65fd5f56ec3807fd71b7cab2c5e2b0937b13404ab36 +md5: d13423b06447113a90b5b1366d4da171 +depends: +- libgcc >=14 +- libstdcxx >=14 +license: Apache-2.0 +license_family: Apache +size: 240444 +timestamp: 1773114901155 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libblas-3.11.0-7_haddc8a3_openblas.conda +build_number: 7 +sha256: f27ba323c2f1e1731b5e880fe520f178f55047f25be94f77e649605b2343c066 +md5: e8d07b777f6ff1fab69665336561910b +depends: +- libopenblas >=0.3.33,<0.3.34.0a0 +- libopenblas >=0.3.33,<1.0a0 +constrains: +- liblapack 3.11.0 7*_openblas +- libcblas 3.11.0 7*_openblas +- mkl <2027 +- blas 2.307 openblas +- liblapacke 3.11.0 7*_openblas +license: BSD-3-Clause +license_family: BSD +size: 18696 +timestamp: 1778489796402 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libcblas-3.11.0-7_hd72aa62_openblas.conda +build_number: 7 +sha256: c8f0192362966df0828419f042d6f94c079e5df00ad6bd05b5e84c12b42f8cc7 +md5: 90ac57b82c055faa9be25031864b7d8f +depends: +- libblas 3.11.0 7_haddc8a3_openblas +constrains: +- liblapack 3.11.0 7*_openblas +- blas 2.307 openblas +- liblapacke 3.11.0 7*_openblas +license: BSD-3-Clause +license_family: BSD +size: 18664 +timestamp: 1778489802790 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libdeflate-1.25-h1af38f5_0.conda +sha256: 48814b73bd462da6eed2e697e30c060ae16af21e9fbed30d64feaf0aad9da392 +md5: a9138815598fe6b91a1d6782ca657b0c +depends: +- libgcc >=14 +license: MIT +license_family: MIT +size: 71117 +timestamp: 1761979776756 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libexpat-2.8.1-hfae3067_0.conda +sha256: 1fc392b997c6ee2bd3226a7cd870d0edbcbb367e25f9f18dd4a7025fced6efc0 +md5: 513dd884361dfb8a554298ed69b58823 +depends: +- libgcc >=14 +constrains: +- expat 2.8.1.* +license: MIT +license_family: MIT +size: 77140 +timestamp: 1779278671302 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libffi-3.5.2-h376a255_0.conda +sha256: 3df4c539449aabc3443bbe8c492c01d401eea894603087fca2917aa4e1c2dea9 +md5: 2f364feefb6a7c00423e80dcb12db62a +depends: +- libgcc >=14 +license: MIT +license_family: MIT +size: 55952 +timestamp: 1769456078358 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libfreetype-2.14.3-h8af1aa0_0.conda +sha256: 752e4f66283d7deb4c6fd47d88df644d8daa2aaa825a54f3bf350a625190192a +md5: a229e22d4d8814a07702b0919d8e6701 +depends: +- libfreetype6 >=2.14.3 +license: GPL-2.0-only OR FTL +size: 8125 +timestamp: 1774301094057 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libfreetype6-2.14.3-hdae7a39_0.conda +sha256: 8e6b27fe4eec4c2fa7b7769a21973734c8dba1de80086fb0213e58375ac09f4c +md5: b99ed99e42dafb27889483b3098cace7 +depends: +- libgcc >=14 +- libpng >=1.6.55,<1.7.0a0 +- libzlib >=1.3.2,<2.0a0 +constrains: +- freetype >=2.14.3 +license: GPL-2.0-only OR FTL +size: 422941 +timestamp: 1774301093473 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgcc-15.2.0-h8acb6b2_19.conda +sha256: 4592b096e553f67799ae70d4b6167eeda3ec74587d68c7aecbf4e7b1df136681 +md5: f35b3f52d0a2ec4ffe3c89ba135cdb9a +depends: +- _openmp_mutex >=4.5 +constrains: +- libgomp 15.2.0 h8acb6b2_19 +- libgcc-ng ==15.2.0=*_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 622462 +timestamp: 1778268755949 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgcc-ng-15.2.0-he9431aa_19.conda +sha256: 1137f93f477f56199ded24117430045a0c02cbe8b10031beac3b9ad2138539d3 +md5: 770cf892e5530f43e63cadc673e85653 +depends: +- libgcc 15.2.0 h8acb6b2_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 27738 +timestamp: 1778268759211 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgfortran-15.2.0-he9431aa_19.conda +sha256: e5ad94be72634233510b33ba792a3339921bd468f0b8bc6961ea05eded251d9b +md5: c7a5b5decf969ead5ecada83654164cf +depends: +- libgfortran5 15.2.0 h1b7bec0_19 +constrains: +- libgfortran-ng ==15.2.0=*_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 27728 +timestamp: 1778268784621 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgfortran5-15.2.0-h1b7bec0_19.conda +sha256: af8e9bdcaa77f133a8ee4c1ef57ef564d9c45aa262abf9f5ef9b50eb99d96407 +md5: 779dbb494de6d3d6477cab52eb34285a +depends: +- libgcc >=15.2.0 +constrains: +- libgfortran 15.2.0 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 1487244 +timestamp: 1778268767295 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libgomp-15.2.0-h8acb6b2_19.conda +sha256: 2370ef0ffcbae5bede3c4bf136add4abc257245eb91f724c99bb4a43116c5a83 +md5: c5e8a379c4a2ec2aea4ba22758c001d9 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 587387 +timestamp: 1778268674393 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libjpeg-turbo-3.1.4.1-he30d5cf_0.conda +sha256: e97ec2af5f09f8f6ea8ecd550055c95ae80fae22015fcfadaa94eafe025c9ccc +md5: a85ba48648f6868016f2741fd9170250 +depends: +- libgcc >=14 +constrains: +- jpeg <0.0.0a +license: IJG AND BSD-3-Clause AND Zlib +size: 693143 +timestamp: 1775962625956 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/liblapack-3.11.0-7_h88aeb00_openblas.conda +build_number: 7 +sha256: 20b38a0156200ac65f597bf0a93914c565435f2cc58b1042581854231a99ac35 +md5: 5899cbd743cc74fd655c1ed2af7120f3 +depends: +- libblas 3.11.0 7_haddc8a3_openblas +constrains: +- libcblas 3.11.0 7*_openblas +- blas 2.307 openblas +- liblapacke 3.11.0 7*_openblas +license: BSD-3-Clause +license_family: BSD +size: 18685 +timestamp: 1778489809140 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/liblzma-5.8.3-he30d5cf_0.conda +sha256: d61962b9cd54c3554361550203c64d5b65b71e3058a285b66e4b04b9769f0a5c +md5: 76298a9e6d71ee6e832a8d0d7373b261 +depends: +- libgcc >=14 +constrains: +- xz 5.8.3.* +license: 0BSD +size: 126102 +timestamp: 1775828008518 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libmpdec-4.0.0-he30d5cf_1.conda +sha256: 57c0dd12d506e84541c4e877898bd2a59cca141df493d34036f18b2751e0a453 +md5: 7b9813e885482e3ccb1fa212b86d7fd0 +depends: +- libgcc >=14 +license: BSD-2-Clause +license_family: BSD +size: 114056 +timestamp: 1769482343003 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libopenblas-0.3.33-pthreads_h9d3fd7e_0.conda +sha256: b018ecfb05e75a8eea3f21f6b5c5c2a54b5178bdcf19e2e2df2735740214a8c8 +md5: 58a66cd95e9692f08abe89f55a6f3f12 +depends: +- libgcc >=14 +- libgfortran +- libgfortran5 >=14.3.0 +constrains: +- openblas >=0.3.33,<0.3.34.0a0 +license: BSD-3-Clause +license_family: BSD +size: 5121336 +timestamp: 1776993423004 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libpng-1.6.58-h1abf092_0.conda +sha256: 483eaa53da40a6a3e558709d9f7b1ca388735364ae21a1ba58cf942514649c92 +md5: f51503ac45a4888bce71af9027a2ecc9 +depends: +- libgcc >=14 +- libzlib >=1.3.2,<2.0a0 +license: zlib-acknowledgement +size: 341202 +timestamp: 1776315188425 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libsqlite-3.53.1-h022381a_0.conda +sha256: ad03b7d8e4d08001f0df88ee7a56108bb35bae4795a42b9a04cc1abfa822bd07 +md5: 2ec1119217d8f0d086e9a62f3cb0e5ea +depends: +- libgcc >=14 +- libzlib >=1.3.2,<2.0a0 +license: blessing +size: 955361 +timestamp: 1777986487553 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libstdcxx-15.2.0-hef695bb_19.conda +sha256: 1dadc45e599f510dd5f97141dddcdbb9844d9f1430c1f3a38075cf1c58f87b4e +md5: 543fbc8d71f2a0baf04cf88ce96cb8bb +depends: +- libgcc 15.2.0 h8acb6b2_19 +constrains: +- libstdcxx-ng ==15.2.0=*_19 +license: GPL-3.0-only WITH GCC-exception-3.1 +license_family: GPL +size: 5546559 +timestamp: 1778268777463 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libtiff-4.7.1-hdb009f0_1.conda +sha256: 7ff79470db39e803e21b8185bc8f19c460666d5557b1378d1b1e857d929c6b39 +md5: 8c6fd84f9c87ac00636007c6131e457d +depends: +- lerc >=4.0.0,<5.0a0 +- libdeflate >=1.25,<1.26.0a0 +- libgcc >=14 +- libjpeg-turbo >=3.1.0,<4.0a0 +- liblzma >=5.8.1,<6.0a0 +- libstdcxx >=14 +- libwebp-base >=1.6.0,<2.0a0 +- libzlib >=1.3.1,<2.0a0 +- zstd >=1.5.7,<1.6.0a0 +license: HPND +size: 488407 +timestamp: 1762022048105 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libuuid-2.42.1-h1022ec0_0.conda +sha256: 1628839b062e98b2192857d4da8496ac9ac6b0dbb77aa040c34efc9192c440ee +md5: 0f42f9fedd2a32d798de95a7f65c456f +depends: +- libgcc >=14 +license: BSD-3-Clause +license_family: BSD +size: 43453 +timestamp: 1779118526838 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libwebp-base-1.6.0-ha2e29f5_0.conda +sha256: b03700a1f741554e8e5712f9b06dd67e76f5301292958cd3cb1ac8c6fdd9ed25 +md5: 24e92d0942c799db387f5c9d7b81f1af +depends: +- libgcc >=14 +constrains: +- libwebp 1.6.0 +license: BSD-3-Clause +license_family: BSD +size: 359496 +timestamp: 1752160685488 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libxcb-1.17.0-h262b8f6_0.conda +sha256: 461cab3d5650ac6db73a367de5c8eca50363966e862dcf60181d693236b1ae7b +md5: cd14ee5cca2464a425b1dbfc24d90db2 +depends: +- libgcc >=13 +- pthread-stubs +- xorg-libxau >=1.0.11,<2.0a0 +- xorg-libxdmcp +license: MIT +license_family: MIT +size: 397493 +timestamp: 1727280745441 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/libzlib-1.3.2-hdc9db2a_2.conda +sha256: eb111e32e5a7313a5bf799c7fb2419051fa2fe7eff74769fac8d5a448b309f7f +md5: 502006882cf5461adced436e410046d1 +constrains: +- zlib 1.3.2 *_2 +license: Zlib +license_family: Other +size: 69833 +timestamp: 1774072605429 +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-3.10.2-pyhcf101f3_0.conda +sha256: 20e0892592a3e7c683e3d66df704a9425d731486a97c34fc56af4da1106b2b6b +md5: ba0a9221ce1063f31692c07370d062f3 +depends: +- importlib-metadata >=4.4 +- python >=3.10 +- python +license: BSD-3-Clause +license_family: BSD +size: 85893 +timestamp: 1770694658918 +- conda: https://conda.anaconda.org/conda-forge/noarch/markdown-it-py-4.2.0-pyhd8ed1ab_0.conda +sha256: 0c4c35376fe920714390d46e4b8d31c876d65f18e1655899e0763ec25f2a902f +md5: 6d03368f2b2b0a5fb6839df53b2eb5e0 +depends: +- mdurl >=0.1,<1 +- python >=3.10 +license: MIT +license_family: MIT +size: 69017 +timestamp: 1778169663339 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/markupsafe-3.0.3-py314hb76de3f_1.conda +sha256: 383c188496d13a55658c06e61e7d4cdff2c9f9d5a0648769fca8250bece7e0ef +md5: e5de3c36dd548b35ff2a8aa49208dcb3 +depends: +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +constrains: +- jinja2 >=3.0.0 +license: BSD-3-Clause +license_family: BSD +size: 27913 +timestamp: 1772446407659 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/mathjax-2.7.7-h8af1aa0_3.tar.bz2 +sha256: 8fd4c79d6eda3d4cba73783114305a53a154ada4d1e334d4e02cb3521429599b +md5: 7b08314a6867a9d5648a1c3265e9eb8e +license: Apache-2.0 +license_family: Apache +size: 22257008 +timestamp: 1662784555011 +- conda: https://conda.anaconda.org/conda-forge/noarch/mdurl-0.1.2-pyhd8ed1ab_1.conda +sha256: 78c1bbe1723449c52b7a9df1af2ee5f005209f67e40b6e1d3c7619127c43b1c7 +md5: 592132998493b3ff25fd7479396e8351 +depends: +- python >=3.9 +license: MIT +license_family: MIT +size: 14465 +timestamp: 1733255681319 +- conda: https://conda.anaconda.org/bioconda/noarch/multiqc-1.35-pyhdfd78af_1.conda +sha256: e86033aa55a9e915e2d0957e770bdb81e3feb26a227d1adb17f9d6c528da6a71 +md5: cdb20309681ba3ce8f52c110e214d4f3 +depends: +- click +- coloredlogs +- humanize +- importlib-metadata +- jinja2 >=3.0.0 +- jsonschema +- markdown +- natsort +- numpy +- packaging +- pillow >=10.2.0 +- plotly >=5.18 +- polars >=1.34.0 +- polars-runtime-compat >=1.34.0 +- pyaml-env +- pydantic >=2.7.1 +- python >=3.9,!=3.14.1 +- python-dotenv +- python-kaleido 0.2.1 +- pyyaml >=4 +- requests +- rich >=10 +- rich-click +- spectra >=0.0.10 +- tiktoken +- tqdm +- typeguard >=4 +license: GPL-3.0-or-later +license_family: GPL3 +size: 4282188 +timestamp: 1779465338806 +- conda: https://conda.anaconda.org/conda-forge/noarch/narwhals-2.21.2-pyhcf101f3_0.conda +sha256: 70f43d62450927d51673eecd8823e14f5b3cfebdb43cda1d502eba97162bab42 +md5: 6687827c332121727ce383919e1ec8c2 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 284323 +timestamp: 1778929680962 +- conda: https://conda.anaconda.org/conda-forge/noarch/natsort-8.4.0-pyhcf101f3_2.conda +sha256: aeb1548eb72e4f198e72f19d242fb695b35add2ac7b2c00e0d83687052867680 +md5: e941e85e273121222580723010bd4fa2 +depends: +- python >=3.9 +- python +license: MIT +license_family: MIT +size: 39262 +timestamp: 1770905275632 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/ncurses-6.6-hf8d1292_0.conda +sha256: 369db85c5cd8d99dde364ce70725d76511d9c8199e5b820c740414091bf5bcca +md5: b2a43456aa56fe80c2477a5094899eff +depends: +- libgcc >=14 +license: X11 AND BSD-3-Clause +size: 960036 +timestamp: 1777422174534 +- conda: https://conda.anaconda.org/conda-forge/noarch/networkx-3.6.1-pyhcf101f3_0.conda +sha256: f6a82172afc50e54741f6f84527ef10424326611503c64e359e25a19a8e4c1c6 +md5: a2c1eeadae7a309daed9d62c96012a2b +depends: +- python >=3.11 +- python +constrains: +- numpy >=1.25 +- scipy >=1.11.2 +- matplotlib-base >=3.8 +- pandas >=2.0 +license: BSD-3-Clause +license_family: BSD +size: 1587439 +timestamp: 1765215107045 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/nspr-4.38-h3ad9384_0.conda +sha256: 78a06e89285fef242e272998b292c1e621e3ee3dd4fba62ec014e503c7ec118f +md5: 6dd4f07147774bf720075a210f8026b9 +depends: +- libgcc >=14 +- libstdcxx >=14 +license: MPL-2.0 +license_family: MOZILLA +size: 235140 +timestamp: 1762350120355 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/nss-3.118-h544fa81_0.conda +sha256: 48942696889367ffd448f8dccfc080fb7e130b9938a4a3b6b20ef8e6af856463 +md5: 4540f9570d12db2150f42ba036154552 +depends: +- libgcc >=14 +- libsqlite >=3.51.0,<4.0a0 +- libstdcxx >=14 +- libzlib >=1.3.1,<2.0a0 +- nspr >=4.38,<5.0a0 +license: MPL-2.0 +license_family: MOZILLA +size: 2061869 +timestamp: 1763490303490 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/numpy-2.4.6-py314he1698a1_0.conda +sha256: 04af718b911f8a3a0095481c7e283aa081a175fe626eccbc2c5644bcb2aba9a1 +md5: 8b173772deea177b45d2a133b509b3f7 +depends: +- python +- libstdcxx >=14 +- libgcc >=14 +- python_abi 3.14.* *_cp314 +- libblas >=3.9.0,<4.0a0 +- liblapack >=3.9.0,<4.0a0 +- libcblas >=3.9.0,<4.0a0 +constrains: +- numpy-base <0a0 +license: BSD-3-Clause +license_family: BSD +size: 8002900 +timestamp: 1779169206742 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/openjpeg-2.5.4-h5da879a_0.conda +sha256: bd1bc8bdde5e6c5cbac42d462b939694e40b59be6d0698f668515908640c77b8 +md5: cea962410e327262346d48d01f05936c +depends: +- libgcc >=14 +- libpng >=1.6.50,<1.7.0a0 +- libstdcxx >=14 +- libtiff >=4.7.1,<4.8.0a0 +- libzlib >=1.3.1,<2.0a0 +license: BSD-2-Clause +license_family: BSD +size: 392636 +timestamp: 1758489353577 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/openssl-3.6.2-h546c87b_0.conda +sha256: 348cb74c1530ac241215d047ef65d134cf797af935c97a68655319362b7e6a01 +md5: 3b129669089e4d6a5c6871dbb4669b99 +depends: +- ca-certificates +- libgcc >=14 +license: Apache-2.0 +license_family: Apache +size: 3706406 +timestamp: 1775589602258 +- conda: https://conda.anaconda.org/conda-forge/noarch/packaging-26.2-pyhc364b38_0.conda +sha256: 3906abfb6511a3bb309e39b9b1b7bc38f50a723971de2395489fd1f379255890 +md5: 4c06a92e74452cfa53623a81592e8934 +depends: +- python >=3.8 +- python +license: Apache-2.0 +license_family: APACHE +size: 91574 +timestamp: 1777103621679 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pillow-12.2.0-py314hac3e5ec_0.conda +sha256: 96b26c2657275ffe84ab510edf0865e21999d791485d12794edd4a71b837beb6 +md5: 87d58d103b47c4a8567b3d7666647684 +depends: +- python +- libgcc >=14 +- python 3.14.* *_cp314 +- openjpeg >=2.5.4,<3.0a0 +- libxcb >=1.17.0,<2.0a0 +- libwebp-base >=1.6.0,<2.0a0 +- zlib-ng >=2.3.3,<2.4.0a0 +- python_abi 3.14.* *_cp314 +- lcms2 >=2.18,<3.0a0 +- tk >=8.6.13,<8.7.0a0 +- libtiff >=4.7.1,<4.8.0a0 +- libjpeg-turbo >=3.1.2,<4.0a0 +- libfreetype >=2.14.3 +- libfreetype6 >=2.14.3 +license: HPND +size: 1062080 +timestamp: 1775060067775 +- conda: https://conda.anaconda.org/conda-forge/noarch/plotly-6.6.0-pyhd8ed1ab_0.conda +sha256: c418d325359fc7a0074cea7f081ef1bce26e114d2da8a0154c5d27ecc87a08e7 +md5: 3e9427ee186846052e81fadde8ebe96a +depends: +- narwhals >=1.15.1 +- packaging +- python >=3.10 +constrains: +- ipywidgets >=7.6 +license: MIT +license_family: MIT +size: 5251872 +timestamp: 1772628857717 +- conda: https://conda.anaconda.org/conda-forge/noarch/polars-1.41.0-pyh58ad624_0.conda +sha256: 70fc56877c4a095ee658d61924d8019768fbae4a48437058d181fc94b0a7c4d8 +md5: 25a883fed9f1f3f21ff317a3e7c92ac4 +depends: +- polars-runtime-32 ==1.41.0 +- python >=3.10 +- python +constrains: +- numpy >=1.16.0 +- pyarrow >=7.0.0 +- fastexcel >=0.9 +- openpyxl >=3.0.0 +- xlsx2csv >=0.8.0 +- connectorx >=0.3.2 +- deltalake >=1.0.0 +- pyiceberg >=0.7.1 +- altair >=5.4.0 +- great_tables >=0.8.0 +- polars-runtime-32 ==1.41.0 +- polars-runtime-64 ==1.41.0 +- polars-runtime-compat ==1.41.0 +license: MIT +size: 539656 +timestamp: 1779630790562 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/polars-runtime-32-1.41.0-py310h32c7c23_0.conda +noarch: python +sha256: d903b774ec09189e164207328aac157eee82fed8cc5c9ace46aeb5d1c15cb5b3 +md5: 8c08c506ed1ea8ce0ca37af5e918c58d +depends: +- python +- libgcc >=14 +- libstdcxx >=14 +- _python_abi3_support 1.* +- cpython >=3.10 +constrains: +- __glibc >=2.17 +license: MIT +size: 38704429 +timestamp: 1779630794932 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/polars-runtime-compat-1.41.0-py310hc0e61be_0.conda +noarch: python +sha256: 101696adff43a654146376c62ef9611bf7946b95fa46f604fe247d77eefc6267 +md5: 65b73e4260677ee5162bdbb252e28e06 +depends: +- python +- libstdcxx >=14 +- libgcc >=14 +- _python_abi3_support 1.* +- cpython >=3.10 +constrains: +- __glibc >=2.17 +license: MIT +size: 38651498 +timestamp: 1779630714016 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/procps-ng-4.0.6-h1779866_0.conda +sha256: e9cbcbc94e151ada3d6dc365380aaaf591f65012c16d9a2abaea4b9b90adc402 +md5: ab7288cc39545556d1bc5e71ab2df9a9 +depends: +- libgcc >=14 +- ncurses >=6.5,<7.0a0 +license: GPL-2.0-or-later AND LGPL-2.0-or-later +license_family: GPL +size: 636733 +timestamp: 1769712412683 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pthread-stubs-0.4-h86ecc28_1002.conda +sha256: 977dfb0cb3935d748521dd80262fe7169ab82920afd38ed14b7fee2ea5ec01ba +md5: bb5a90c93e3bac3d5690acf76b4a6386 +depends: +- libgcc >=13 +license: MIT +license_family: MIT +size: 8342 +timestamp: 1726803319942 +- conda: https://conda.anaconda.org/conda-forge/noarch/pyaml-env-1.2.2-pyhd8ed1ab_0.conda +sha256: 58994e0d2ea8584cb399546e6f6896d771995e6121d1a7b6a2c9948388358932 +md5: e17be1016bcc3516827b836cd3e4d9dc +depends: +- python >=3.9 +- pyyaml >=5.0,<=7.0 +license: MIT +license_family: MIT +size: 14645 +timestamp: 1736766960536 +- conda: https://conda.anaconda.org/conda-forge/noarch/pydantic-2.13.4-pyhcf101f3_0.conda +sha256: 69700e31165df070e9716315e042196aa92525dae5deb5107785847ab9f4189f +md5: 729843edafc0899b3348bd3f19525b9d +depends: +- typing-inspection >=0.4.2 +- typing_extensions >=4.14.1 +- python >=3.10 +- annotated-types >=0.6.0 +- pydantic-core ==2.46.4 +- python +license: MIT +license_family: MIT +size: 346511 +timestamp: 1778103405862 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pydantic-core-2.46.4-py314h451b6cc_0.conda +sha256: 1a7c6b18e404c13c4d959888ecb48a9ed9de0e41be2872932b83a35278088df0 +md5: 9c3ace6aba6df14b943256095ac1281e +depends: +- python +- typing-extensions >=4.6.0,!=4.7.0 +- libgcc >=14 +- python 3.14.* *_cp314 +- python_abi 3.14.* *_cp314 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 1780773 +timestamp: 1778084251775 +- conda: https://conda.anaconda.org/conda-forge/noarch/pygments-2.20.0-pyhd8ed1ab_0.conda +sha256: cf70b2f5ad9ae472b71235e5c8a736c9316df3705746de419b59d442e8348e86 +md5: 16c18772b340887160c79a6acc022db0 +depends: +- python >=3.10 +license: BSD-2-Clause +license_family: BSD +size: 893031 +timestamp: 1774796815820 +- conda: https://conda.anaconda.org/conda-forge/noarch/pysocks-1.7.1-pyha55dd90_7.conda +sha256: ba3b032fa52709ce0d9fd388f63d330a026754587a2f461117cac9ab73d8d0d8 +md5: 461219d1a5bd61342293efa2c0c90eac +depends: +- __unix +- python >=3.9 +license: BSD-3-Clause +license_family: BSD +size: 21085 +timestamp: 1733217331982 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/python-3.14.5-hfd9ac0a_100_cp314.conda +build_number: 100 +sha256: d37bad5447365346166c72950ea8f49689aa49cecc1b0623d00458427627b8df +md5: d956e09feb806f5974675ce92ad81d45 +depends: +- bzip2 >=1.0.8,<2.0a0 +- ld_impl_linux-aarch64 >=2.36.1 +- libexpat >=2.8.0,<3.0a0 +- libffi >=3.5.2,<3.6.0a0 +- libgcc >=14 +- liblzma >=5.8.3,<6.0a0 +- libmpdec >=4.0.0,<5.0a0 +- libsqlite >=3.53.1,<4.0a0 +- libuuid >=2.42.1,<3.0a0 +- libzlib >=1.3.2,<2.0a0 +- ncurses >=6.6,<7.0a0 +- openssl >=3.5.6,<4.0a0 +- python_abi 3.14.* *_cp314 +- readline >=8.3,<9.0a0 +- tk >=8.6.13,<8.7.0a0 +- tzdata +- zstd >=1.5.7,<1.6.0a0 +license: Python-2.0 +size: 37510439 +timestamp: 1779236267040 +python_site_packages_path: lib/python3.14/site-packages +- conda: https://conda.anaconda.org/conda-forge/noarch/python-dotenv-1.2.2-pyhcf101f3_0.conda +sha256: 74e417a768f59f02a242c25e7db0aa796627b5bc8c818863b57786072aeb85e5 +md5: 130584ad9f3a513cdd71b1fdc1244e9c +depends: +- python >=3.10 +license: BSD-3-Clause +license_family: BSD +size: 27848 +timestamp: 1772388605021 +- conda: https://conda.anaconda.org/conda-forge/noarch/python-gil-3.14.5-h4df99d1_100.conda +sha256: 41dd7da285d71d519257fa7dacb1cae060d5ebfaa5f92cba5994899d2978e943 +md5: 41954747ba952ec4b01e16c2c9e8d8ff +depends: +- cpython 3.14.5.* +- python_abi * *_cp314 +license: Python-2.0 +size: 50212 +timestamp: 1779236703009 +- conda: https://conda.anaconda.org/conda-forge/noarch/python-kaleido-0.2.1-pyhd8ed1ab_0.tar.bz2 +sha256: e17bf63a30aec33432f1ead86e15e9febde9fc40a7f869c0e766be8d2db44170 +md5: 310259a5b03ff02289d7705f39e2b1d2 +depends: +- kaleido-core 0.2.1.* +- python >=3.5 +license: MIT +license_family: MIT +size: 18320 +timestamp: 1615204747600 +- conda: https://conda.anaconda.org/conda-forge/noarch/python_abi-3.14-8_cp314.conda +build_number: 8 +sha256: ad6d2e9ac39751cc0529dd1566a26751a0bf2542adb0c232533d32e176e21db5 +md5: 0539938c55b6b1a59b560e843ad864a4 +constrains: +- python 3.14.* *_cp314 +license: BSD-3-Clause +license_family: BSD +size: 6989 +timestamp: 1752805904792 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/pyyaml-6.0.3-py314h807365f_1.conda +sha256: 496b5e65dfdd0aaaaa5de0dcaaf3bceea00fcb4398acf152f89e567c82ec1046 +md5: 9ae2c92975118058bd720e9ba2bb7c58 +depends: +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python >=3.14,<3.15.0a0 *_cp314 +- python_abi 3.14.* *_cp314 +- yaml >=0.2.5,<0.3.0a0 +license: MIT +license_family: MIT +size: 195678 +timestamp: 1770223441816 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/readline-8.3-hb682ff5_0.conda +sha256: fe695f9d215e9a2e3dd0ca7f56435ab4df24f5504b83865e3d295df36e88d216 +md5: 3d49cad61f829f4f0e0611547a9cda12 +depends: +- libgcc >=14 +- ncurses >=6.5,<7.0a0 +license: GPL-3.0-only +license_family: GPL +size: 357597 +timestamp: 1765815673644 +- conda: https://conda.anaconda.org/conda-forge/noarch/referencing-0.37.0-pyhcf101f3_0.conda +sha256: 0577eedfb347ff94d0f2fa6c052c502989b028216996b45c7f21236f25864414 +md5: 870293df500ca7e18bedefa5838a22ab +depends: +- attrs >=22.2.0 +- python >=3.10 +- rpds-py >=0.7.0 +- typing_extensions >=4.4.0 +- python +license: MIT +license_family: MIT +size: 51788 +timestamp: 1760379115194 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/regex-2026.5.9-py314h51f160d_0.conda +sha256: 05ef55f09f31eabd0a205f6b065e13fc746675f41924620977692ef0ffe5aad8 +md5: 34ed7bc9febeca70f55b757ca09c354d +depends: +- libgcc >=14 +- python >=3.14,<3.15.0a0 +- python >=3.14,<3.15.0a0 *_cp314 +- python_abi 3.14.* *_cp314 +license: Apache-2.0 AND CNRI-Python +license_family: PSF +size: 409780 +timestamp: 1778374195988 +- conda: https://conda.anaconda.org/conda-forge/noarch/requests-2.34.2-pyhcf101f3_0.conda +sha256: 1715246b19c9f85ee022933b4845f2fc14ac9184981b7b7d9b728bec8e9588da +md5: 4a85203c1d80c1059086ae860836ffb9 +depends: +- python >=3.10 +- certifi >=2023.5.7 +- charset-normalizer >=2,<4 +- idna >=2.5,<4 +- urllib3 >=1.26,<3 +- python +constrains: +- chardet >=3.0.2,<8 +license: Apache-2.0 +license_family: APACHE +size: 68709 +timestamp: 1778851103479 +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-15.0.0-pyhcf101f3_0.conda +sha256: 3d6ba2c0fcdac3196ba2f0615b4104e532525ffa1335b50a2878be5ff488814a +md5: 0242025a3c804966bf71aa04eee82f66 +depends: +- markdown-it-py >=2.2.0 +- pygments >=2.13.0,<3.0.0 +- python >=3.10 +- typing_extensions >=4.0.0,<5.0.0 +- python +license: MIT +license_family: MIT +size: 208577 +timestamp: 1775991661559 +- conda: https://conda.anaconda.org/conda-forge/noarch/rich-click-1.9.7-pyh8f84b5b_0.conda +sha256: aa3fcb167321bae51998de2e94d199109c9024f25a5a063cb1c28d8f1af33436 +md5: 0c20a8ebcddb24a45da89d5e917e6cb9 +depends: +- python >=3.10 +- rich >=12 +- click >=8 +- typing-extensions >=4 +- __unix +- python +license: MIT +license_family: MIT +size: 64356 +timestamp: 1769850479089 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/rpds-py-0.30.0-py314h02b7a91_0.conda +sha256: a587240f16eac7c6a80f9585cef679cd1cb9a287b8dfcdd36dcef1f7e7db15dc +md5: e7f6ed9e60043bb5cbcc527764897f0d +depends: +- python +- libgcc >=14 +- python_abi 3.14.* *_cp314 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 376332 +timestamp: 1764543345455 +- conda: https://conda.anaconda.org/conda-forge/noarch/spectra-0.0.11-pyhd8ed1ab_2.conda +sha256: 7c65782d2511738e62c70462e89d65da4fa54d5a7e47c46667bcd27a59f81876 +md5: 472239e4eb7b5a84bb96b3ed7e3a596a +depends: +- colormath >=3.0.0 +- python >=3.9 +license: MIT +license_family: MIT +size: 22284 +timestamp: 1735770589188 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/sqlite-3.53.1-he8854b5_0.conda +sha256: 27467e4bfb0681546f149718c33b806fec078185fbaa6a4d17d440bc8f56185c +md5: 46009bdca2315a99e0a3a7d0ba1af3b9 +depends: +- libgcc >=14 +- libsqlite 3.53.1 h022381a_0 +- libzlib >=1.3.2,<2.0a0 +- ncurses >=6.6,<7.0a0 +- readline >=8.3,<9.0a0 +license: blessing +size: 209964 +timestamp: 1777986493350 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/tiktoken-0.12.0-py314h6a36e60_3.conda +sha256: c1da41c79262b27efa168407cfecc47b20270e5fc071a8307f95a2c85fb94170 +md5: 55bf7b559202236157b14323b40f19e6 +depends: +- libgcc >=14 +- libstdcxx >=14 +- python >=3.14,<3.15.0a0 +- python_abi 3.14.* *_cp314 +- regex >=2022.1.18 +- requests >=2.26.0 +constrains: +- __glibc >=2.17 +license: MIT +license_family: MIT +size: 914402 +timestamp: 1764030357702 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/tk-8.6.13-noxft_h0dc03b3_103.conda +sha256: e25c314b52764219f842b41aea2c98a059f06437392268f09b03561e4f6e5309 +md5: 7fc6affb9b01e567d2ef1d05b84aa6ed +depends: +- libgcc >=14 +- libzlib >=1.3.1,<2.0a0 +constrains: +- xorg-libx11 >=1.8.12,<2.0a0 +license: TCL +license_family: BSD +size: 3368666 +timestamp: 1769464148928 +- conda: https://conda.anaconda.org/conda-forge/noarch/tqdm-4.67.3-pyh8f84b5b_0.conda +sha256: 9ef8e47cf00e4d6dcc114eb32a1504cc18206300572ef14d76634ba29dfe1eb6 +md5: e5ce43272193b38c2e9037446c1d9206 +depends: +- python >=3.10 +- __unix +- python +license: MPL-2.0 and MIT +size: 94132 +timestamp: 1770153424136 +- conda: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.5.2-pyhcf101f3_0.conda +sha256: 59d7851d32fddb5b510272e6557aa982edeb927d349648dac27f5bf01d18bb26 +md5: 4460f039b7dedf15f7df086446ca75ae +depends: +- typing_extensions >=4.14.0 +- python >=3.10 +- importlib-metadata >=3.6 +- python +constrains: +- pytest >=7 +license: MIT +license_family: MIT +size: 38297 +timestamp: 1778779291237 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-extensions-4.15.0-h396c80c_0.conda +sha256: 7c2df5721c742c2a47b2c8f960e718c930031663ac1174da67c1ed5999f7938c +md5: edd329d7d3a4ab45dcf905899a7a6115 +depends: +- typing_extensions ==4.15.0 pyhcf101f3_0 +license: PSF-2.0 +license_family: PSF +size: 91383 +timestamp: 1756220668932 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing-inspection-0.4.2-pyhcf101f3_2.conda +sha256: 8b90d2f19f9458b8c58a55e1fcdc1d90c1603a847a47654d8a454549413ba60a +md5: 53f5409c5cfd6c5a66417d68e3f0a864 +depends: +- python >=3.10 +- typing_extensions >=4.12.0 +- python +license: MIT +license_family: MIT +size: 20935 +timestamp: 1777105465795 +- conda: https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.15.0-pyhcf101f3_0.conda +sha256: 032271135bca55aeb156cee361c81350c6f3fb203f57d024d7e5a1fc9ef18731 +md5: 0caa1af407ecff61170c9437a808404d +depends: +- python >=3.10 +- python +license: PSF-2.0 +license_family: PSF +size: 51692 +timestamp: 1756220668932 +- conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2025c-hc9c84f9_1.conda +sha256: 1d30098909076af33a35017eed6f2953af1c769e273a0626a04722ac4acaba3c +md5: ad659d0a2b3e47e38d829aa8cad2d610 +license: LicenseRef-Public-Domain +size: 119135 +timestamp: 1767016325805 +- conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.7.0-pyhd8ed1ab_0.conda +sha256: feff959a816f7988a0893201aa9727bbb7ee1e9cec2c4f0428269b489eb93fb4 +md5: cbb88288f74dbe6ada1c6c7d0a97223e +depends: +- backports.zstd >=1.0.0 +- brotli-python >=1.2.0 +- h2 >=4,<5 +- pysocks >=1.5.6,<2.0,!=1.5.7 +- python >=3.10 +license: MIT +license_family: MIT +size: 103560 +timestamp: 1778188657149 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/xorg-libxau-1.0.12-he30d5cf_1.conda +sha256: e9f6e931feeb2f40e1fdbafe41d3b665f1ab6cb39c5880a1fcf9f79a3f3c84a5 +md5: 1c246e1105000c3660558459e2fd6d43 +depends: +- libgcc >=14 +license: MIT +license_family: MIT +size: 16317 +timestamp: 1762977521691 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/xorg-libxdmcp-1.1.5-he30d5cf_1.conda +sha256: 128d72f36bcc8d2b4cdbec07507542e437c7d67f677b7d77b71ed9eeac7d6df1 +md5: bff06dcde4a707339d66d45d96ceb2e2 +depends: +- libgcc >=14 +license: MIT +license_family: MIT +size: 21039 +timestamp: 1762979038025 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/yaml-0.2.5-h80f16a2_3.conda +sha256: 66265e943f32ce02396ad214e27cb35f5b0490b3bd4f064446390f9d67fa5d88 +md5: 032d8030e4a24fe1f72c74423a46fb88 +depends: +- libgcc >=14 +license: MIT +license_family: MIT +size: 88088 +timestamp: 1753484092643 +- conda: https://conda.anaconda.org/conda-forge/noarch/zipp-4.1.0-pyhcf101f3_0.conda +sha256: 210bd31c22bb88f5e2a167df24c95bb5f152b2ada7502f9b8c49d1f5366db423 +md5: ba3dcdc8584155c97c648ae9c044b7a3 +depends: +- python >=3.10 +- python +license: MIT +license_family: MIT +size: 24190 +timestamp: 1779159948016 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-ng-2.3.3-ha7cb516_1.conda +sha256: 638a3a41a4fbfed52d3c60c8ef5a3693b3f12a5b1a3f58fa29f5698d0a0702e2 +md5: f731af71c723065d91b4c01bb822641b +depends: +- libgcc >=14 +- libstdcxx >=14 +license: Zlib +license_family: Other +size: 121046 +timestamp: 1770167944449 +- conda: https://conda.anaconda.org/conda-forge/linux-aarch64/zstd-1.5.7-h85ac4a6_6.conda +sha256: 569990cf12e46f9df540275146da567d9c618c1e9c7a0bc9d9cfefadaed20b75 +md5: c3655f82dcea2aa179b291e7099c1fcc +depends: +- libzlib >=1.3.1,<2.0a0 +license: BSD-3-Clause +license_family: BSD +size: 614429 +timestamp: 1764777145593 diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml index 37e7612d..7a970e2b 100644 --- a/modules/nf-core/multiqc/environment.yml +++ b/modules/nf-core/multiqc/environment.yml @@ -4,4 +4,4 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::multiqc=1.34 + - bioconda::multiqc=1.35 diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf index e80e8cd8..c4bc715e 100644 --- a/modules/nf-core/multiqc/main.nf +++ b/modules/nf-core/multiqc/main.nf @@ -4,8 +4,8 @@ process MULTIQC { conda "${moduleDir}/environment.yml" container "${workflow.containerEngine in ['singularity', 'apptainer'] && !task.ext.singularity_pull_docker_container - ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/1b/1bef8af6be88c5733461959c46ac8ef73d18f65277f62a1695d0e1633054f9c2/data' - : 'community.wave.seqera.io/library/multiqc:1.34--db7c73dae76bc9e6'}" + ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c8/c8e346f4f6080eadf1253505e6ff09ef004454fc18e8d672006fd7b222cc412e/data' + : 'community.wave.seqera.io/library/multiqc:1.35--c17fb751507e9dfc'}" input: tuple val(meta), path(multiqc_files, stageAs: "?/*"), path(multiqc_config, stageAs: "?/*"), path(multiqc_logo), path(replace_names), path(sample_names) diff --git a/modules/nf-core/multiqc/meta.yml b/modules/nf-core/multiqc/meta.yml index 2facc627..27ce18d8 100644 --- a/modules/nf-core/multiqc/meta.yml +++ b/modules/nf-core/multiqc/meta.yml @@ -110,24 +110,24 @@ maintainers: containers: conda: linux/amd64: - lock_file: modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-db7c73dae76bc9e6_1.txt + lock_file: modules/nf-core/multiqc/.conda-lock/linux_amd64-bd-c17fb751507e9dfc_1.txt linux/arm64: - lock_file: modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-d167b8012595a136_1.txt + lock_file: modules/nf-core/multiqc/.conda-lock/linux_arm64-bd-5c84a5000a226ab5_1.txt docker: linux/amd64: - name: community.wave.seqera.io/library/multiqc:1.34--db7c73dae76bc9e6 - build_id: bd-db7c73dae76bc9e6_1 - scan_id: sc-66fc7138dbf1cf48_1 + name: community.wave.seqera.io/library/multiqc:1.35--c17fb751507e9dfc + build_id: bd-c17fb751507e9dfc_1 + scan_id: sc-3b1b3932f9846892_1 linux/arm64: - name: community.wave.seqera.io/library/multiqc:1.34--d167b8012595a136 - build_id: bd-d167b8012595a136_1 - scan_id: sc-ac701dfa631a2af9_1 + name: community.wave.seqera.io/library/multiqc:1.35--5c84a5000a226ab5 + build_id: bd-5c84a5000a226ab5_1 + scan_id: sc-0d39df41e9737bbd_1 singularity: linux/amd64: - name: oras://community.wave.seqera.io/library/multiqc:1.34--4fc8657c816047c0 - build_id: bd-4fc8657c816047c0_1 - https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/1b/1bef8af6be88c5733461959c46ac8ef73d18f65277f62a1695d0e1633054f9c2/data + name: oras://community.wave.seqera.io/library/multiqc:1.35--c680f2aea25ccec2 + build_id: bd-c680f2aea25ccec2_1 + https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c8/c8e346f4f6080eadf1253505e6ff09ef004454fc18e8d672006fd7b222cc412e/data linux/arm64: - name: oras://community.wave.seqera.io/library/multiqc:1.34--7fbd82d945c06726 - build_id: bd-7fbd82d945c06726_1 - https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/9a/9a1fec9662a152683e6fcae440d0ce20920b3b89dc62d1e3a52e73f92eba0969/data + name: oras://community.wave.seqera.io/library/multiqc:1.35--c0468833d65b2f81 + build_id: bd-c0468833d65b2f81_1 + https: https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/e4/e48aa28aebc881254a499b24c3e1ce77b8df1b85a5432699ed6f72eb17ac7fb5/data diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap index 7c2f370f..44899216 100644 --- a/modules/nf-core/multiqc/tests/main.nf.test.snap +++ b/modules/nf-core/multiqc/tests/main.nf.test.snap @@ -81,7 +81,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.35" ] ] } @@ -175,7 +175,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.35" ] ] } @@ -221,7 +221,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.35" ] ] } @@ -314,7 +314,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.35" ] ] } @@ -408,7 +408,7 @@ [ "MULTIQC", "multiqc", - "1.34" + "1.35" ] ] } diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json index 01e80ed9..c9958957 100644 --- a/ro-crate-metadata.json +++ b/ro-crate-metadata.json @@ -22,8 +22,8 @@ "@id": "./", "@type": "Dataset", "creativeWorkStatus": "InProgress", - "datePublished": "2026-04-30T13:33:27+00:00", - "description": "

\n \n \n \"nf-core/spatialvi\"\n \n

\n\n[![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/spatialvi)\n[![GitHub Actions CI Status](https://github.com/nf-core/spatialvi/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/spatialvi/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/spatialvi/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/spatialvi/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/spatialvi/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/spatialvi)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23spatialvi-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/spatialvi)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/spatialvi** is a bioinformatics analysis pipeline for Visium spatial\ntranscriptomics data from 10x Genomics. It can process and analyse spatial data\neither directly from raw data by running [Space Ranger](https://support.10xgenomics.com/spatial-gene-expression/software/pipelines/latest/what-is-space-ranger)\nor data already processed by Space Ranger. The pipeline currently consists of\nthe following steps:\n\n

\n \n

\n\nThe pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool\nto run tasks across multiple compute infrastructures in a very portable manner.\nIt uses Docker/Singularity containers making installation trivial and results\nhighly reproducible. The [Nextflow DSL2](https://www.nextflow.io/docs/latest/dsl2.html)\nimplementation of this pipeline uses one container per process which makes it\nmuch easier to maintain and update software dependencies. Where possible, these\nprocesses have been submitted to and installed from [nf-core/modules](https://github.com/nf-core/modules)\nin order to make them available to all nf-core pipelines, and to everyone within\nthe Nextflow community!\n\nOn release, automated continuous integration tests run the pipeline on a\nfull-sized dataset on the AWS cloud infrastructure. This ensures that the\npipeline runs on AWS, has sensible resource allocation defaults set to run on\nreal-world datasets, and permits the persistent storage of results to benchmark\nbetween pipeline releases and other analysis sources. The results obtained from\nthe full-sized test can be viewed on the [nf-core website](https://nf-co.re/spatialvi/results).\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/get_started/environment_setup/overview) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/get_started/run-your-first-pipeline) with `-profile test` before running the workflow on actual data.\n\nYou can run the pipeline using:\n\n```bash\nnextflow run nf-core/spatialvi \\\n -profile \\\n --input samplesheet.csv \\\n --outdir \n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/running/run-pipelines#using-parameter-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/spatialvi/usage) and the [parameter documentation](https://nf-co.re/spatialvi/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/spatialvi/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/spatialvi/output).\n\n## Credits\n\nnf-core/spatialvi was originally developed by the Jackson\nLaboratory1, up to the [0.1.0](https://github.com/nf-core/spatialvi/releases/tag/0.1.0)\ntag. It was further developed in a collaboration between the [National\nBioinformatics Infrastructure Sweden](https://nbis.se/) and [National Genomics\nInfrastructure](https://ngisweden.scilifelab.se/) within [SciLifeLab](https://scilifelab.se/);\nit is currently developed and maintained by [Erik Fasterius](https://github.com/fasterius)\nand [Christophe Avenel](https://github.com/cavenel).\n\nMany thanks to others who have helped out along the way too, especially [Gregor\nSturm](https://github.com/grst)!\n\n_1 Supported by grants from the US National Institutes of Health\n[U24CA224067](https://reporter.nih.gov/project-details/10261367) and\n[U54AG075941](https://reporter.nih.gov/project-details/10376627). Original\nauthors [Dr. Sergii Domanskyi](https://github.com/sdomanskyi), Prof. Jeffrey\nChuang and Dr. Anuj Srivastava._\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](docs/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#spatialvi` channel](https://nfcore.slack.com/channels/spatialvi) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n\n\n\n\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n", + "datePublished": "2026-09-01T13:07:09+00:00", + "description": "

\n \n \n \"nf-core/spatialvi\"\n \n

\n\n[![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/spatialvi)\n[![GitHub Actions CI Status](https://github.com/nf-core/spatialvi/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/spatialvi/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/spatialvi/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/spatialvi/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/spatialvi/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.1.0-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.1.0)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/spatialvi)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23spatialvi-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/spatialvi)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/spatialvi** is a bioinformatics pipeline that ...\n\n\n\n\n1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/get_started/environment_setup/overview) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/get_started/run-your-first-pipeline) with `-profile test` before running the workflow on actual data.\n\n\n\nNow, you can run the pipeline using:\n\n\n\n```bash\nnextflow run nf-core/spatialvi \\\n -profile \\\n --input samplesheet.csv \\\n --outdir \n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/running/run-pipelines#using-parameter-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/spatialvi/usage) and the [parameter documentation](https://nf-co.re/spatialvi/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/spatialvi/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/spatialvi/output).\n\n## Credits\n\nnf-core/spatialvi was originally written by Erik Fasterius, Christophe Avenel, Sergii Domanskyi, Jeffrey Chuang, Anuj Srivastava.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](docs/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#spatialvi` channel](https://nfcore.slack.com/channels/spatialvi) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n\n\n\n\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n", "hasPart": [ { "@id": "main.nf" @@ -99,7 +99,7 @@ }, "mentions": [ { - "@id": "#d877e7ce-5827-4338-96a5-71caf0d7df23" + "@id": "#57fdd2fd-3be6-4e39-ae0f-a356abbf6c58" } ], "name": "nf-core/spatialvi" @@ -140,11 +140,11 @@ "@id": "https://orcid.org/0000-0002-3298-2358" }, { - "@id": "#56048f34-cab3-4158-9146-6f434210ef75" + "@id": "#b0ed9c19-92df-4349-b30d-a56544f4b4ab" } ], "dateCreated": "", - "dateModified": "2026-04-30T13:33:27Z", + "dateModified": "2026-09-01T13:07:09Z", "dct:conformsTo": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE/", "keywords": [ "nf-core", @@ -194,11 +194,11 @@ "version": "!>=25.10.4" }, { - "@id": "#d877e7ce-5827-4338-96a5-71caf0d7df23", + "@id": "#57fdd2fd-3be6-4e39-ae0f-a356abbf6c58", "@type": "TestSuite", "instance": [ { - "@id": "#55f34f96-6b35-461d-b395-fe19fd0a2d5b" + "@id": "#fb38355d-9b73-4279-b664-2b44e3cb8c1c" } ], "mainEntity": { @@ -207,7 +207,7 @@ "name": "Test suite for nf-core/spatialvi" }, { - "@id": "#55f34f96-6b35-461d-b395-fe19fd0a2d5b", + "@id": "#fb38355d-9b73-4279-b664-2b44e3cb8c1c", "@type": "TestInstance", "name": "GitHub Actions workflow for testing nf-core/spatialvi", "resource": "repos/nf-core/spatialvi/actions/workflows/nf-test.yml", @@ -359,9 +359,9 @@ "name": "Jeffrey Chuang" }, { - "@id": "#56048f34-cab3-4158-9146-6f434210ef75", + "@id": "#b0ed9c19-92df-4349-b30d-a56544f4b4ab", "@type": "Person", "name": "Anuj Srivastava" } ] -} \ No newline at end of file +} diff --git a/subworkflows/local/utils_nfcore_spatialvi_pipeline/main.nf b/subworkflows/local/utils_nfcore_spatialvi_pipeline/main.nf index ff56a325..d46d0ff1 100644 --- a/subworkflows/local/utils_nfcore_spatialvi_pipeline/main.nf +++ b/subworkflows/local/utils_nfcore_spatialvi_pipeline/main.nf @@ -81,7 +81,8 @@ workflow PIPELINE_INITIALISATION { show_hidden, before_text, after_text, - command + command, + false ) // diff --git a/subworkflows/nf-core/utils_nfschema_plugin/main.nf b/subworkflows/nf-core/utils_nfschema_plugin/main.nf index 1df8b76f..9ff0681f 100644 --- a/subworkflows/nf-core/utils_nfschema_plugin/main.nf +++ b/subworkflows/nf-core/utils_nfschema_plugin/main.nf @@ -22,6 +22,7 @@ workflow UTILS_NFSCHEMA_PLUGIN { before_text // string: text to show before the help message and parameters summary after_text // string: text to show after the help message and parameters summary command // string: an example command of the pipeline + cli_typecast // boolean: whether to perform typecasting of CLI parameters. Set this to `null` to use the default behaviour main: @@ -34,11 +35,11 @@ workflow UTILS_NFSCHEMA_PLUGIN { fullHelp: help_full, ] if(parameters_schema) { - help_options << [parametersSchema: parameters_schema] + help_options << [parameters_schema: parameters_schema] } log.info paramsHelp( help_options, - (params.help instanceof String && params.help != "true") ? params.help : "", + (help instanceof String && help != "true") ? help : "", ) exit 0 } @@ -50,7 +51,7 @@ workflow UTILS_NFSCHEMA_PLUGIN { summary_options = [:] if(parameters_schema) { - summary_options << [parametersSchema: parameters_schema] + summary_options << [parameters_schema: parameters_schema] } log.info before_text log.info paramsSummaryLog(summary_options, input_workflow) @@ -63,7 +64,10 @@ workflow UTILS_NFSCHEMA_PLUGIN { if(validate_params) { validateOptions = [:] if(parameters_schema) { - validateOptions << [parametersSchema: parameters_schema] + validateOptions << [parameters_schema: parameters_schema] + } + if(cli_typecast != null) { + validateOptions << [cast_cli_params: cli_typecast] } validateParameters(validateOptions) } diff --git a/subworkflows/nf-core/utils_nfschema_plugin/meta.yml b/subworkflows/nf-core/utils_nfschema_plugin/meta.yml index f7d9f028..1d8c75a9 100644 --- a/subworkflows/nf-core/utils_nfschema_plugin/meta.yml +++ b/subworkflows/nf-core/utils_nfschema_plugin/meta.yml @@ -25,6 +25,30 @@ input: option. When this input is empty it will automatically use the configured schema or "${projectDir}/nextflow_schema.json" as default. The schema should not be given in this way for meta pipelines. + - help: + type: boolean, string + description: | + Show the help message and exit. When a parameter name is given, show the help message for that parameter instead of the general help message. + - help_full: + type: boolean + description: Show the full help message and exit. + - show_hidden: + type: boolean + description: Show hidden parameters in the help message. + - before_text: + type: string + description: Text to show before the parameters summary and help message. + - after_text: + type: string + description: Text to show after the parameters summary and help message. + - command: + type: string + description: An example command to run the pipeline, to show in the help message and the summary. + - cli_typecast: + type: boolean + description: | + Whether to apply typecasting to the parameters given via the CLI before validation. + Set this to `null` to use the default behavior. output: - dummy_emit: type: boolean diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test index c977917a..1fd1eac1 100644 --- a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test +++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test @@ -31,6 +31,7 @@ nextflow_workflow { input[6] = "" input[7] = "" input[8] = "" + input[9] = null """ } } @@ -63,6 +64,7 @@ nextflow_workflow { input[6] = "" input[7] = "" input[8] = "" + input[9] = null """ } } @@ -95,6 +97,7 @@ nextflow_workflow { input[6] = "" input[7] = "" input[8] = "" + input[9] = null """ } } @@ -127,6 +130,7 @@ nextflow_workflow { input[6] = "" input[7] = "" input[8] = "" + input[9] = null """ } } @@ -160,6 +164,7 @@ nextflow_workflow { input[6] = "Before" input[7] = "After" input[8] = "nextflow run test/test" + input[9] = null """ } } diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config index f6537cc3..fd71cb8f 100644 --- a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config +++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config @@ -1,5 +1,5 @@ plugins { - id "nf-schema@2.6.1" + id "nf-schema@2.7.2" } validation { diff --git a/tests/nextflow.config b/tests/nextflow.config index 1565e69d..f4631baf 100644 --- a/tests/nextflow.config +++ b/tests/nextflow.config @@ -8,7 +8,8 @@ // Or any resources requirements params { modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/' - pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/spatialvi/' + pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/spatialvi/' } -aws.client.anonymous = true // fixes S3 access issues on self-hosted runners +// Fixes S3 access issues on self-hosted runners +aws.client.anonymous = true