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Enable custom MSA input #479

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@tlitfin

Description of feature

It would be good to support user-provided MSA input for various modes. The best implementation probably requires users to provide MSAs in a format that is pre-paired across all subunits in the target oligomeric complex with a fallback to pairing based on UniProt IDs. Each module will require an adaptor module to convert paired MSAs to the expected input format.

There is an initial PR (#174) for this feature in colabfold.

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