Hi! I am following the workflow to use degCovariates() with a DESeqDataSet object and, when I write:
degCovariates(counts = counts(dds), metadata = as.data.frame(colData(dds)),
fdr = 0.1, scale = FALSE, minPC = 5,
correlation = "kendall", addCovDen = TRUE, legacy = TRUE,
smart = TRUE, method = "lm", plot = TRUE)
I obtained this error:
running pca and calculating correlations for:
un-scaled data in pca;
pve >= 5%;
kendall cor
Error in is.data.frame(x) :
(list) object cannot be coerced to type 'double'
Any ideas what could have gone wrong?
Thank you very much in advance!
Hi! I am following the workflow to use degCovariates() with a DESeqDataSet object and, when I write:
I obtained this error:
Any ideas what could have gone wrong?
Thank you very much in advance!