Merge branch 'master' of https://github.com/learning-process/parallel_programming_course into an/increase-coverage-1

# Conflicts:
#	modules/performance/include/performance.hpp

Author: allnes

CODE_OF_CONDUCT.md .github/CODE_OF_CONDUCT.mdCODE_OF_CONDUCT.md renamed to .github/CODE_OF_CONDUCT.md

@@ -1,44 +1,94 @@
-'task:all':
-  - "tasks/**/all"
-'task:mpi':
-  - "tasks/**/mpi"
-'task:omp':
-  - "tasks/**/omp"
-'task:seq':
-  - "tasks/**/seq"
-'task:stl':
-  - "tasks/**/stl"
-'task:tbb':
-  - "tasks/**/tbb"
+"task:all":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/all"
+
+"task:mpi":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/mpi"
+
+"task:omp":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/omp"
+
+"task:seq":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/seq"
+
+"task:stl":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/stl"
+
+"task:tbb":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**/tbb"
+
 task:
-  - "tasks/**"
+  - changed-files:
+      - any-glob-to-any-file:
+          - "tasks/**"
+
 ci:
-  - ".github/**"
-  - "appveyor.yml"
-'modules:performance':
-  - "modules/performance/**"
-'modules:runners':
-  - "modules/runners/**"
-'modules:task':
-  - "modules/task/**"
-'modules:util':
-  - "modules/util/**"
-3rdparty:
-  - "3rdparty/**"
+  - changed-files:
+      - any-glob-to-any-file:
+          - ".github/**"
+          - "appveyor.yml"
+
+"modules:performance":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "modules/performance/**"
+
+"modules:runners":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "modules/runners/**"
+
+"modules:task":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "modules/task/**"
+
+"modules:util":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "modules/util/**"
+
+"3rdparty":
+  - changed-files:
+      - any-glob-to-any-file:
+          - "3rdparty/**"
+
 infrastructure:
-  - "scripts/**"
-  - "**/CMakeLists.txt"
-  - "cmake/**"
-  - ".clang-format"
-  - ".clang-tidy"
-  - ".gitignore"
-  - ".gitmodules"
-  - "codecov.yml"
-  - "setup.cfg"
+  - changed-files:
+      - any-glob-to-any-file:
+          - "scripts/**"
+          - "**/CMakeLists.txt"
+          - "cmake/**"
+          - ".clang-format"
+          - ".clang-tidy"
+          - ".gitignore"
+          - ".gitmodules"
+          - "codecov.yml"
+          - "setup.cfg"
+
 python:
-  - "**/requirements.txt"
+  - changed-files:
+      - any-glob-to-any-file:
+          - "**/requirements.txt"
+
 docs:
-  - "docs/**"
-  - "README.md"
+  - changed-files:
+      - any-glob-to-any-file:
+          - "docs/**"
+          - "README.md"
+
 scoreboard:
-  - "scoreboard/**"
+  - changed-files:
+      - any-glob-to-any-file:
+          - "scoreboard/**"

codecov.yml .github/codecov.ymlcodecov.yml renamed to .github/codecov.yml

@@ -19,25 +19,25 @@ jobs:
 
     steps:
       - name: Check out code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up QEMU
-        uses: docker/setup-qemu-action@v2
+        uses: docker/setup-qemu-action@v3
         with:
           platforms: linux/amd64,linux/arm64
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
+        uses: docker/setup-buildx-action@v3
 
       - name: Log in to GHCR
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
         with:
           registry: ghcr.io
           username: ${{ github.actor }}
           password: ${{ secrets.DOCKER_TOKEN }}
 
       - name: Build and push multi-arch image
-        uses: docker/build-push-action@v4
+        uses: docker/build-push-action@v6
         with:
           context: .
           file: ./docker/ubuntu.Dockerfile

.github/labeler.yml

@@ -8,14 +8,15 @@ jobs:
     runs-on: ubuntu-24.04
     permissions:
       contents: read
+      issues: write
       pull-requests: write
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - name: Apply labels based on changed files
-        uses: actions/labeler@v4
+        uses: actions/labeler@v5
         with:
           repo-token: "${{ secrets.GITHUB_TOKEN }}"
           configuration-path: ".github/labeler.yml"

.github/workflows/docker.yml

@@ -68,11 +68,11 @@ jobs:
           mkdir -p install
           tar -xzvf macos-clang-install.tar.gz -C install
       - name: Run func tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
         env:
           PPC_NUM_THREADS: 1
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
   clang-test-extended:
@@ -99,6 +99,6 @@ jobs:
           mkdir -p install
           tar -xzvf macos-clang-install.tar.gz -C install
       - name: Run tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1

.github/workflows/labeler.yml

@@ -76,11 +76,11 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-gcc-install-${{ matrix.os }}.tar.gz -C install
       - name: Run func tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
         env:
           PPC_NUM_THREADS: 1
       - name: Run func tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
   gcc-test-extended:
@@ -106,7 +106,7 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-gcc-install-${{ matrix.os }}.tar.gz -C install
       - name: Run func tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1
   clang-build:
@@ -178,11 +178,11 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-clang-install-${{ matrix.os }}.tar.gz -C install
       - name: Run func tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
         env:
           PPC_NUM_THREADS: 1
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
   clang-test-extended:
@@ -210,7 +210,7 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-clang-install-${{ matrix.os }}.tar.gz -C install
       - name: Run tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1
   clang-sanitizer-build:
@@ -288,14 +288,14 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-clang-sanitizer-install-${{ matrix.os }}.tar.gz -C install
       - name: Run tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes" --counts 2 --additional-mpi-args="--oversubscribe"
+        run: scripts/run_tests.py --running-type="processes" --counts 2 --additional-mpi-args="--oversubscribe"
         env:
           PPC_NUM_THREADS: 2
           PPC_ASAN_RUN: 1
           ASAN_OPTIONS: abort_on_error=1
           UBSAN_OPTIONS: halt_on_error=1
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
           PPC_ASAN_RUN: 1
@@ -327,7 +327,7 @@ jobs:
           mkdir -p install
           tar -xzvf ubuntu-clang-sanitizer-install-${{ matrix.os }}.tar.gz -C install
       - name: Run tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1
           PPC_ASAN_RUN: 1
@@ -361,12 +361,12 @@ jobs:
         run: |
           cmake --build build --parallel
       - name: Run tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes"
+        run: scripts/run_tests.py --running-type="processes"
         env:
           PPC_NUM_PROC: 2
           PPC_NUM_THREADS: 2
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
       - name: Generate gcovr Coverage Data
@@ -396,8 +396,8 @@ jobs:
           name: cov-report
           path: 'cov-report'
       - name: Comment coverage report link
-        # TODO: Support PRs from forks too
-        if: ${{ github.event_name == 'pull_request' && !github.event.pull_request.head.repo.fork }}
+        # TODO: Support PRs from forks and handle cases with insufficient write permissions
+        continue-on-error: true
         uses: peter-evans/create-or-update-comment@v4
         with:
           token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/mac.yml

@@ -51,11 +51,11 @@ jobs:
         run: Expand-Archive -Path .\windows-msvc-install.zip -DestinationPath . -Force
         shell: pwsh
       - name: Run func tests (MPI)
-        run: python3 scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="processes" --counts 1 2 3 4
         env:
           PPC_NUM_THREADS: 1
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
   msvc-test-extended:
@@ -76,7 +76,7 @@ jobs:
         run: Expand-Archive -Path .\windows-msvc-install.zip -DestinationPath . -Force
         shell: pwsh
       - name: Run tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1
   clang-build:
@@ -135,7 +135,7 @@ jobs:
         run: Expand-Archive -Path .\windows-clang-install.zip -DestinationPath . -Force
         shell: pwsh
       - name: Run tests (threads)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
+        run: scripts/run_tests.py --running-type="threads" --counts 1 2 3 4
         env:
           PPC_NUM_PROC: 1
   clang-test-extended:
@@ -156,6 +156,6 @@ jobs:
         run: Expand-Archive -Path .\windows-clang-install.zip -DestinationPath . -Force
         shell: pwsh
       - name: Run tests (threads extended)
-        run: python3 scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
+        run: scripts/run_tests.py --running-type="threads" --counts 5 7 11 13
         env:
           PPC_NUM_PROC: 1

.github/workflows/ubuntu.yml

@@ -46,13 +46,13 @@ Example usage:
    export PPC_NUM_PROC=2
 
    # Multithreaded functional tests
-   python3 scripts/run_tests.py --running-type="threads"
+   scripts/run_tests.py --running-type="threads"
 
    # MPI functional tests
-   python3 scripts/run_tests.py --running-type="processes"
+   scripts/run_tests.py --running-type="processes"
 
    # Performance benchmarks
-   python3 scripts/run_tests.py --running-type="performance"
+   scripts/run_tests.py --running-type="performance"
 
 Additional MPI arguments can be supplied with ``--additional-mpi-args`` when
 running in ``processes`` mode.