Issues

• chore: use_precomputed_bed needs to be set to True to use 'metadata_txt' path, otherwise redundant make_identifiers_tbl rule is triggered

  frattalab/QAPA_snakemake#8 · Filter by author SamBryce-Smith opened on Dec 3, 2025

• submit.sh for UCL/sge cluster - add an extra positional argument for --singularity-prefix

  frattalab/QAPA_snakemake#6 · Filter by author SamBryce-Smith opened on Nov 10, 2023

• feat: Add average & delta PAU values to final 'processed' DEXSeq results table

  frattalab/QAPA_snakemake#4 · Filter by author SamBryce-Smith opened on May 16, 2023

• feat: Calculate average & delta PAUs for provided contrasts

  enhancement
  frattalab/QAPA_snakemake#3 · Filter by author SamBryce-Smith opened on May 16, 2023

• DEXSeq & _PAR_Y genes - paralogues are grouped with counterparts for differential usage analysis

  frattalab/QAPA_snakemake#1 · Filter by author SamBryce-Smith opened on Apr 25, 2023