Paths fixed

Author: edoardob90

Dockerfile

@@ -1,6 +1,22 @@
 # Use the jupyter/minimal-notebook as the base image
 FROM quay.io/jupyter/minimal-notebook:latest
 
+# Set a shortcut to the tutorial name
+ENV BASENAME="python-tutorial"
+ENV REPO="https://github.com/edoardob90/${BASENAME}"
+
+# Set the working directory to the home directory of the notebook user
+WORKDIR ${HOME}
+
+# Clone the tutorial repository
+RUN git clone \
+    --branch add-dockerfile \
+    --depth 1 \
+    ${REPO}
+
+# Set the working directory to the repository directory
+WORKDIR ${BASENAME}
+
 # Switch to root user to install additional dependencies (if needed)
 USER root
 
@@ -16,29 +32,17 @@ RUN apt-get update && \
     rm -rf /var/lib/apt/lists/*
 
 # Copy the script to setup the environment
-COPY docker/setup_custom_env.py /opt/setup-scripts/
-# Make the script executable
-RUN chmod +x /opt/setup-scripts/setup_custom_env.py
+RUN cp -a docker/setup_custom_env.py /opt/setup-scripts/ && \
+    chmod +x /opt/setup-scripts/setup_custom_env.py
 
 # Copy the script to activate the Conda environment
-COPY docker/activate-custom-env.sh /usr/local/bin/before-notebook.d/
+RUN cp -a docker/activate-custom-env.sh /usr/local/bin/before-notebook.d/
 
 # Switch back to the default notebook user
 USER ${NB_UID}
 
-# Set a shortcut to the tutorial name
-ENV BASENAME="python-tutorial"
-
-# Set the working directory to the home directory of the notebook user
-WORKDIR ${HOME}
-
-# Clone the tutorial repository
-RUN git clone \
-    --branch main \
-    --depth 1 \
-    https://github.com/empa-scientific-it/${BASENAME}
-
-WORKDIR ${HOME}/${BASENAME}
+# Set the working directory to the repository directory
+# WORKDIR ${HOME}/${BASENAME}
 
 # Create the Conda environment defined in environment.yml
 RUN mamba env create -f binder/environment.yml && \
@@ -49,7 +53,7 @@ RUN mamba env create -f binder/environment.yml && \
 # Register the Jupyter kernel from the custom environment
 RUN /opt/setup-scripts/setup_custom_env.py ${BASENAME}
 
-# Copy the IPython configuration file
+# Copy the IPython configuration file (binder/postBuild script)
 RUN mkdir -p ${HOME}/.ipython/profile_default
 COPY binder/ipython_config.py ${HOME}/.ipython/profile_default/