caper/NAMESPACE at main · davidorme/caper · GitHub

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# Export all names
exportPattern(".")

# Import all packages listed as Imports or Depends
import(
  ape,
  MASS,
  mvtnorm
)

importFrom("methods", "as")
importFrom("graphics", "abline", "hist", "lines", "par", "plot",
           "text", "title")
importFrom("utils", "packageVersion", "str")
importFrom("stats", "IQR", "anova", "as.formula", "coef",
           "complete.cases", "delete.response", "density", "fitted",
           "formula", "is.empty.model", "lm", "lm.fit", "logLik",
           "median", "model.frame", "model.matrix", "model.response",
           "na.omit", "na.pass", "naprint", "nobs", "optim", "pchisq",
           "pf", "predict", "printCoefmat", "pt", "qchisq", "qqline",
           "qqnorm", "quantile", "reorder", "resid", "residuals",
           "rexp", "rstudent", "runif", "stat.anova", "summary.lm",
           "terms", "uniroot", "update", "var", "wilcox.test")

# register S3 methods
S3method(anova, caic)
S3method(anova, caiclist)
S3method(anova, pgls)
S3method(anova, pglslist)
S3method(coef, caic)
S3method(coef, pgls)
S3method(fitted, pgls)
S3method(logLik, caic)
S3method(logLik, pgls)
S3method(as, comparative.data.growTree)
S3method(na.omit, comparative.data)
S3method(summary, caic)
S3method(summary, fusco)
S3method(summary, pgls)
S3method(summary, phylo.d)
S3method(summary, phylo.d.subset)
S3method(nobs, pgls)
S3method(plot, caic)
S3method(plot, fusco)
S3method(plot, pgls)
S3method(plot, pgls.profile)
S3method(plot, phylo.d)
S3method(predict, caic)
S3method(predict, pgls)
S3method(print, caic)
S3method(print, caic.diagnostics)
S3method(print, comparative.data)
S3method(print, fusco)
S3method(print, pgls)
S3method(print, phylo.d)
S3method(print, phylo.d.subset)
S3method(print, summary.pgls)
S3method(reorder, comparative.data)
S3method(residuals, caic)
S3method(residuals, pgls)
S3method(subset, comparative.data)
S3method('[', comparative.data)