Issues

• HapMap3 as LD reference

  bvilhjal/ldpred#163 · Filter by author lizlitkowski opened on Nov 11, 2023

• fraction selection

  bvilhjal/ldpred#162 · Filter by author bnj50 opened on Apr 22, 2021

• LDpred installation problems

  bvilhjal/ldpred#160 · Filter by author mdahmad opened on Nov 20, 2020

• Error: LD reference does not seem to match the coordinated SNP data

  bvilhjal/ldpred#159 · Filter by author danjweiner opened on Nov 8, 2020

• SNPs retained after filtering

  bvilhjal/ldpred#158 · Filter by author bbitarello opened on Oct 24, 2020

• LD reference panel and target genotype

  bvilhjal/ldpred#157 · Filter by author Qiaolan opened on Oct 22, 2020
  1

• effalt in the summary statistics

  bvilhjal/ldpred#156 · Filter by author jystatistics opened on Aug 24, 2020

• Standardized genotype data in Step 3 (ldpred score)

  bvilhjal/ldpred#155 · Filter by author ChongWu-Biostat opened on Aug 22, 2020

• Inverse Correlation between PRS and phenotype

  bvilhjal/ldpred#154 · Filter by author gat2010 opened on Aug 15, 2020
  1

• LD_RADIUS

  bvilhjal/ldpred#153 · Filter by author marine11 opened on Aug 7, 2020
  1

• keyError: 'raw_snps'

  bvilhjal/ldpred#151 · Filter by author jielab opened on Jul 3, 2020
  9

• AssertionError in gibbs sampling step

  bvilhjal/ldpred#150 · Filter by author PradoVarathan opened on Jun 29, 2020

• KeyError: 'CT'

  bvilhjal/ldpred#147 · Filter by author marine11 opened on May 8, 2020
  1

• Possible defect when disabling MAF, version 1.0.11

  bvilhjal/ldpred#145 · Filter by author erez-odna opened on May 6, 2020
  2

• Bug report for computing z scores from p-values

  bvilhjal/ldpred#144 · Filter by author mxcai opened on Mar 19, 2020
  1

• Unable to open object (object 'ns' doesn't exist) error in ldpred gibbs

  bvilhjal/ldpred#143 · Filter by author annashcherbina opened on Mar 10, 2020
  2

• Explicit output definitions

  bvilhjal/ldpred#141 · Filter by author shoagun opened on Feb 1, 2020

• Potential bug in plinkfiles.py

  bvilhjal/ldpred#140 · Filter by author stormliucong opened on Jan 24, 2020

• Diseased samples got lower PRS than healthy samples

  bvilhjal/ldpred#139 · Filter by author gyni opened on Jan 24, 2020
  4

• Basic question regarding how to run

  bvilhjal/ldpred#138 · Filter by author Sabor117 opened on Jan 13, 2020

• IndexError: pop from empty list

  bvilhjal/ldpred#136 · Filter by author chokriNao opened on Dec 24, 2019
  3

• KeyError in ldpred fast

  bvilhjal/ldpred#135 · Filter by author gulumk opened on Dec 18, 2019
  2

• what does effalt in STANDARD really refers to?

  bvilhjal/ldpred#133 · Filter by author mathieu-lemire opened on Dec 16, 2019
  1

• Write all output in a log file by default

  bvilhjal/ldpred#132 · Filter by author bvilhjal opened on Dec 12, 2019

• KeyError during coord genotypes

  bvilhjal/ldpred#131 · Filter by author pgormley opened on Dec 4, 2019
  8