Issues

• Error when following the example biobox usage

  bioboxes/rfc#218 · Filter by author andre-geldenhuis opened on Jun 27, 2018

• Aid users by printing citation info

  bioboxes/rfc#213 · Filter by author abremges opened on May 18, 2017
  9

• Improved versioning

  bioboxes/rfc#212 · Filter by author abremges opened on May 18, 2017
  11

• Tutorial for using profiling Bioboxes.

  pri-high
  bioboxes/rfc#209 · Filter by author pbelmann opened on Feb 20, 2017 · 3./10 March Meeting
  

• Command Line Interface should have a run command for Profiling tools

  pri-high
  bioboxes/rfc#208 · Filter by author pbelmann opened on Feb 20, 2017 · 3./10 March Meeting
  

• Define a new format for the biobox.yaml input data

  bioboxes/rfc#207 · Filter by author michaelbarton opened on Feb 17, 2017 · 3./10 March Meeting
  7

  

• Update existing assembly evaluation images with new metrics file output

  bioboxes/rfc#206 · Filter by author michaelbarton opened on Feb 17, 2017

• The bioboxes validator task should ensure a metric TSV file is generated

  bioboxes/rfc#205 · Filter by author michaelbarton opened on Feb 17, 2017
  6

• Make a TSV output file mandatory as part of the RFC for the assembly evaluation task

  bioboxes/rfc#204 · Filter by author michaelbarton opened on Feb 17, 2017
  

• Integrate biobox images listed in nucleotides in the new biobox list format

  bioboxes/rfc#202 · Filter by author michaelbarton opened on Feb 17, 2017
  

• Need to emphasize input requirements

  pri-high
  bioboxes/rfc#197 · Filter by author fernandomeyer opened on Dec 16, 2016 · 7./14. February Meeting
  2

  

• GAEMR Assembly Evaluation Biobox

  bioboxes/rfc#195 · Filter by author pbelmann opened on Jun 6, 2016

• Bioboxes python interface library.

  bioboxes/rfc#193 · Filter by author michaelbarton opened on May 15, 2016

• Genome assembly recipe does not work

  pri-high
  bioboxes/rfc#192 · Filter by author michaelbarton opened on Mar 21, 2016 · 7./14. February Meeting
  2

• Bioboxes CLI does not work on OSX

  bioboxes/rfc#186 · Filter by author michaelbarton opened on Nov 9, 2015
  7

• Create velvet-optimiser assembler image

  bioboxes/rfc#177 · Filter by author michaelbarton opened on Aug 10, 2015

• Create squeezambler assembler image

  bioboxes/rfc#176 · Filter by author michaelbarton opened on Aug 10, 2015

• Create meraculous assembler biobox

  bioboxes/rfc#175 · Filter by author michaelbarton opened on Aug 10, 2015

• Jeff Froula written guide on creating a biobox should be intergrated into existing documentation

  bioboxes/rfc#165 · Filter by author michaelbarton opened on Jul 8, 2015
  4

• Encourage security-awareness when using Docker

  enhancement
  bioboxes/rfc#164 · Filter by author fungs opened on Jun 30, 2015
  3

• Decouple biobox implementations and input validation

  A-Discussion
  bioboxes/rfc#163 · Filter by author fungs opened on Jun 25, 2015
  3

• Milestone - increase downloads of bioboxes

  bioboxes/rfc#156 · Filter by author michaelbarton opened on Jun 19, 2015 · 2015-10 Measure and increase downloads of bioboxes
  1

• New Binning Evaluation Interface

  A-RFCspri-high
  bioboxes/rfc#154 · Filter by author pbelmann opened on Jun 10, 2015 · 7./14. February Meeting
  1

  

• Restructure RFC

  bioboxes/rfc#147 · Filter by author pbelmann opened on May 12, 2015

• Allow configuration of directories in containers

  A-RFCs
  bioboxes/rfc#139 · Filter by author michaelbarton opened on May 7, 2015