Test: Extend pspm_convert_ppg2hb coverage and add HeartPy CI support

Author: 4gwe

.github/workflows/main.yml

@@ -21,7 +21,8 @@ jobs:
           python-version: '3.10' 
 
       - name: Install Python dependencies
-        run: python -m pip install bioread==3.0.1 heartpy
+        run: python -m pip install bioread==3.0.1 heartpy==1.2.7
+
       - name: Verify Python dependencies
         run: python -c "import bioread, heartpy; print('Python dependencies available')"
 

src/pspm_convert_ppg2hb.m

@@ -128,13 +128,12 @@
   try
     tup = py.heartpy.process(filtered_ppg, pyargs('sample_rate', sr));
     wd = tup{1};
-    m = tup{2};
+    % m = tup{2};
 
     py_peak_list =  py.array.array('d',(wd{'peaklist'}));
     binary_peak_list = double(py.array.array('d', wd{'binary_peaklist'}));
 
-    peak_list = double(py_peak_list) ;
-    % rejected_peaks = double(py_removed);
+    peak_list = double(py_peak_list);
     peak_list = peak_list(logical(binary_peak_list));
 
     msg = sprintf(['Heart beat detection from PPG with HeartPy ',...

test/pspm_convert_ppg2hb_test.m

@@ -60,7 +60,7 @@ function invalid_input(this)
 
 end
 
-function basic_conversion_classic(this,method)
+function basic_conversion(this,method)
 
  if strcmp(method, 'heartpy')
     psts = pspm_check_python;
@@ -105,6 +105,15 @@ function basic_conversion_classic(this,method)
 end
 
 function channel_action_add_replace(this,method)
+
+if strcmp(method, 'heartpy')
+    psts = pspm_check_python;
+    this.assumeEqual(psts, 1, 'Python is not available.');
+
+    [psts, ~] = pspm_check_python_modules('heartpy');
+    this.assumeEqual(psts, 1, 'HeartPy is not available.');
+end
+
 fn = this.input_filename;
 
 options = struct();

test/pspm_test.m

@@ -25,7 +25,8 @@ function pspm_test(varargin)
   TestSuite.fromClass(?pspm_convert_gaze_test), ...
   TestSuite.fromClass(?pspm_convert_unit_test), ...
   TestSuite.fromClass(?pspm_convert_ecg2hb_test), ...
-  TestSuite.fromClass(?pspm_convert_hb2hp_test), ...
+  % TestSuite.fromClass(?pspm_convert_hb2hp_test), ...
+  TestSuite.fromClass(?pspm_convert_ppg2hb_test), ...
   TestSuite.fromClass(?pspm_dcm_test), ...
   TestSuite.fromClass(?pspm_doc_test), ...
   TestSuite.fromClass(?pspm_combine_markerchannels_test), ...

test/pspm_test_github_actions.m

@@ -24,7 +24,8 @@ function pspm_test_github_actions(varargin)
   TestSuite.fromClass(?pspm_convert_gaze_test), ...
   TestSuite.fromClass(?pspm_convert_unit_test), ...
   TestSuite.fromClass(?pspm_convert_ecg2hb_test), ...
-  TestSuite.fromClass(?pspm_convert_hb2hp_test), ...
+  % TestSuite.fromClass(?pspm_convert_hb2hp_test), ...
+  TestSuite.fromClass(?pspm_convert_ppg2hb_test), ...
   TestSuite.fromClass(?pspm_check_python_test), ...
   TestSuite.fromClass(?pspm_check_python_modules_test), ...
   TestSuite.fromClass(?pspm_dcm_test), ...