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Hello, I would like to understand CZI metadata. Right now I would like to calculate pixel to distance, but I don't understand the meaning of the tags. No software like ZEN or FIJI is an option, I need to extract the information from the XML I exported from the CZI files. Regards, |
Answered by
sebi06
Feb 25, 2026
Replies: 1 comment
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Hi @vit-byro, there is a python package czitools that simplifies finding the right entries inside the XML, nevertheless this on is using Python. But checking this code: https://github.com/sebi06/czitools/blob/main/src/czitools/metadata_tools/scaling.py might point you into the right direction. |
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vit-byro
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Hi @vit-byro,
there is a python package czitools that simplifies finding the right entries inside the XML, nevertheless this on is using Python. But checking this code: https://github.com/sebi06/czitools/blob/main/src/czitools/metadata_tools/scaling.py might point you into the right direction.