LiBiSCo/Dockerfile at master · Sameerpython/LiBiSCo · GitHub

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FROM ubuntu:18.04

# Update system
RUN apt-get update

# Install programs needed for the server to run
RUN apt-get install -y net-tools
RUN apt-get install -y wget
RUN apt-get install -y sudo
RUN apt-get install -y vim-tiny
RUN apt-get install -y libgl1-mesa-glx
RUN apt-get install cron

RUN mkdir -p /opt/bindingdata
WORKDIR /opt/bindingdata

# Install XAMPP
RUN wget https://www.apachefriends.org/xampp-files/7.3.9/xampp-linux-x64-7.3.9-0-installer.run
RUN chmod +x xampp-linux-x64-7.3.9-0-installer.run
RUN sudo /opt/bindingdata/xampp-linux-x64-7.3.9-0-installer.run

# Install Anaconda
RUN wget https://repo.anaconda.com/archive/Anaconda2-2019.10-Linux-x86_64.sh
RUN chmod +x Anaconda2-2019.10-Linux-x86_64.sh
RUN sudo ./Anaconda2-2019.10-Linux-x86_64.sh -b -p /usr/local/Anaconda2.7
RUN echo "PATH=/usr/local/Anaconda2.7/bin:$PATH" >> /etc/profile

# Install python dependencies
RUN /usr/local/Anaconda2.7/bin/conda install -y -c conda-forge biopython
RUN export PATH=/usr/local/Anaconda2.7/bin:$PATH

# Configure a con job to regularly remove SVG files
RUN echo "* 0 * * * root rm /opt/lampp/htdocs/LiBiSCo/tmp/*.svg" >> /etc/crontab
RUN echo "* 0 * * * root rm /opt/lampp/htdocs/LiBiSCo/tmp/*.zip" >> /etc/crontab

# Install LiBiSCo
RUN mkdir /opt/lampp/htdocs/LiBiSCo
RUN mkdir /opt/lampp/htdocs/LiBiSCo/tmp
RUN chmod 775 /opt/lampp/htdocs/LiBiSCo/tmp
RUN chmod 775 /opt/lampp/htdocs/LiBiSCo
RUN chgrp -R daemon /opt/lampp/htdocs/LiBiSCo

WORKDIR /opt/lampp/htdocs/LiBiSCo
ADD httpd.conf /opt/lampp/etc/
ADD *.py /opt/lampp/htdocs/LiBiSCo/
ADD *.gif /opt/lampp/htdocs/LiBiSCo/
ADD *.png /opt/lampp/htdocs/LiBiSCo/
ADD *.jpg /opt/lampp/htdocs/LiBiSCo/
ADD *.jpeg /opt/lampp/htdocs/LiBiSCo/
RUN chmod +x /opt/lampp/htdocs/LiBiSCo/*.py

# Start the server
EXPOSE 80
CMD /opt/lampp/xampp start; service cron start; bash