diff --git a/CHANGELOG.md b/CHANGELOG.md
index a366b49..4823813 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -13,6 +13,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Changed the name of the module `acoustics` to `aa`, to refect that this module is specific to active acoustic data
 - Added a `paths` module for all functions involved in generating file or directory paths. Moved all such path functions from other modules into `paths`, and updated these path functions to use the new ESD prod directory structure. 
 - Changed `gcp` module, using Gemini to follow a "Fail-Fast" module design. 
+- Added a qartod module, for generating qartod flags using the `ioos_qc` package for the science dataset.
+- Added dynamic QARTOD threshold calculation utilities to the `qartod` module and added create_qc_summary_table() for generating profile-level deployment QC summary tables.
+- Added combine_datasets() to the `utils` for combining profile NetCDF files into a deployment dataset.
+- Added deployment QC plotting utilities in `plots`, including stacked QC flag summary plots and variable-specific QC flag time-series plots.
 
 ### Imagery
 - Changed to extracting the date extracting EXIF metadata from the imagery files, rather than deriving image datetimes from the filenames. This included writing relevant metadata to a metadata-specific bucket, and reading the datetimes from the metadata files. Specifically:
diff --git a/environment.yml b/environment.yml
index 9971fcb..5286982 100755
--- a/environment.yml
+++ b/environment.yml
@@ -27,6 +27,7 @@ dependencies:
   - folium
   - skyfield
   - timezonefinder
+  - ioos_qc
 
   - pip:
     - dbdreader
diff --git a/esdglider/data/qartod-config.yml b/esdglider/data/qartod-config.yml
new file mode 100644
index 0000000..69f8f5c
--- /dev/null
+++ b/esdglider/data/qartod-config.yml
@@ -0,0 +1,207 @@
+contexts:
+  - streams:
+
+      # =====================================================
+      # POSITION
+      # =====================================================
+
+      latitude:
+        qartod:
+          gross_range_test:
+            suspect_span: [-90, 90]
+            fail_span: [-90, 90]
+
+      longitude:
+        qartod:
+          gross_range_test:
+            suspect_span: [-180, 180]
+            fail_span: [-180, 180]
+
+      lat:
+        qartod:
+          gross_range_test:
+            suspect_span: [-90, 90]
+            fail_span: [-90, 90]
+
+      lon:
+        qartod:
+          gross_range_test:
+            suspect_span: [-180, 180]
+            fail_span: [-180, 180]
+
+      profile_lat:
+        qartod:
+          gross_range_test:
+            suspect_span: [-90, 90]
+            fail_span: [-90, 90]
+
+      profile_lon:
+        qartod:
+          gross_range_test:
+            suspect_span: [-180, 180]
+            fail_span: [-180, 180]
+
+      lat_uv:
+        qartod:
+          gross_range_test:
+            suspect_span: [-90, 90]
+            fail_span: [-90, 90]
+
+      lon_uv:
+        qartod:
+          gross_range_test:
+            suspect_span: [-180, 180]
+            fail_span: [-180, 180]
+
+      # =====================================================
+      # PRESSURE / DEPTH
+      # =====================================================
+
+      pressure:
+        qartod:
+          gross_range_test:
+            suspect_span: [0, 1000]
+            fail_span: [0, 6000]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1
+
+          flat_line_test:
+            tolerance: 0.001
+            suspect_threshold: 3000
+            fail_threshold: 5000
+
+      depth:
+        qartod:
+          gross_range_test:
+            suspect_span: [0, 1200]
+            fail_span: [0, 2000]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1
+
+      # =====================================================
+      # TEMPERATURE
+      # =====================================================
+
+      temperature:
+        qartod:
+          gross_range_test:
+            suspect_span: [0, 35]
+            fail_span: [-2, 40]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1
+
+          flat_line_test:
+            tolerance: 0.001
+            suspect_threshold: 3000
+            fail_threshold: 5000
+
+      # =====================================================
+      # CONDUCTIVITY
+      # =====================================================
+
+      conductivity:
+        qartod:
+          gross_range_test:
+            suspect_span: [0, 6]
+            fail_span: [0, 9]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1
+
+          flat_line_test:
+            tolerance: 0.001
+            suspect_threshold: 3000
+            fail_threshold: 5000
+
+      # =====================================================
+      # SALINITY
+      # =====================================================
+
+      salinity:
+        qartod:
+            gross_range_test:
+              fail_span: [0, 42]
+              suspect_span: [10, 38]
+
+            spike_test:
+              suspect_threshold: 0.0
+              fail_threshold: 0.0
+
+            rate_of_change_test:
+              threshold: 0.1
+
+            flat_line_test:
+              tolerance: 0.001
+              suspect_threshold: 3000
+              fail_threshold: 5000
+
+      # =====================================================
+      # DENSITY
+      # =====================================================
+
+      density:
+        qartod:
+            gross_range_test:
+              fail_span: [1000, 1100]
+              suspect_span: null
+
+            spike_test:
+              suspect_threshold: 0.0
+              fail_threshold: 0.0
+
+            rate_of_change_test:
+              threshold: 0.1
+
+            flat_line_test:
+              tolerance: 0.001
+              suspect_threshold: 3000
+              fail_threshold: 5000
+
+      # =====================================================
+      # VELOCITY
+      # =====================================================
+
+      u:
+        qartod:
+          gross_range_test:
+            suspect_span: [-3, 3]
+            fail_span: [-10, 10]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1
+
+      v:
+        qartod:
+          gross_range_test:
+            suspect_span: [-3, 3]
+            fail_span: [-10, 10]
+
+          spike_test:
+            suspect_threshold: 0.0
+            fail_threshold: 0.0
+
+          rate_of_change_test:
+            threshold: 0.1 
\ No newline at end of file
diff --git a/esdglider/paths.py b/esdglider/paths.py
index 2fbf449..a90af71 100644
--- a/esdglider/paths.py
+++ b/esdglider/paths.py
@@ -55,6 +55,22 @@ def get_path_yaml_deployment_vars(yaml_type: str) -> str:
     with resources.as_file(ref) as path:
         return str(path)
 
+def get_path_qartod_config() -> str:
+    """
+    Get the path to the packaged QARTOD configuration file.
+    The configuration file is distributed with the package and
+    contains the default IOOS QARTOD test configuration used when
+    generating quality-control flags.
+
+    Returns
+    -------
+    str
+        Path to the packaged ``qartod-config.yml`` file.
+    """
+    ref = resources.files("esdglider.data") / "qartod-config.yml"
+
+    with resources.as_file(ref) as path:
+        return str(path)
 
 def get_path_glider_data_out(
     deployment_name: str,
diff --git a/esdglider/plots.py b/esdglider/plots.py
index 1f6afc6..30baf02 100644
--- a/esdglider/plots.py
+++ b/esdglider/plots.py
@@ -9,13 +9,16 @@
 import cmocean.cm as cmo
 import matplotlib
 import matplotlib.dates as mdates
+import matplotlib.lines as mlines
 import matplotlib.figure
 import matplotlib.pyplot as plt
 import numpy as np
 import xarray as xr
+import pandas as pd
 from cartopy.mpl.geoaxes import GeoAxes
 from matplotlib.gridspec import GridSpec
 from matplotlib.patches import Patch
+from pathlib import Path
 from numpy.typing import NDArray
 
 from esdglider import utils
@@ -194,6 +197,30 @@ def adj_var_label(ds, var):
     "profile_direction",
 ]
 
+"""
+Dictionaries used for QARTOD qc flags
+"""
+QC_COLORS = {
+    1: "#2ca02c",   # GOOD
+    2: "#7f7f7f",   # UNKNOWN
+    3: "#ffbf00",   # SUSPECT
+    4: "#d62728",   # FAIL
+    9: "#000000",   # MISSING
+}
+
+QC_LABELS = {
+    1: "GOOD",
+    2: "UNKNOWN",
+    3: "SUSPECT",
+    4: "FAIL",
+    9: "MISSING",
+}
+
+QC_FLAG_NAMES = {
+    name: QC_COLORS[flag]
+    for flag, name in QC_LABELS.items()
+}
+
 
 def esd_all_plots(
     ds_paths: dict,
@@ -272,7 +299,9 @@ def esd_all_plots(
 
     if bar_file is not None:
         _log.info(f"Loading bar file from {bar_file}")
-        bar = xr.load_dataset(bar_file).rename({"latitude": "lat", "longitude": "lon"})
+        bar = xr.load_dataset(bar_file).rename(
+            {"latitude": "lat", "longitude": "lon"}
+        )
         bar = bar.where(bar.z <= 0, drop=True)
     else:
         _log.info("No bar file path")
@@ -450,7 +479,9 @@ def sci_timeseries_loop_helper(
     concurrent.futures.ProcessPoolExecutor
     """
     _log.debug(f"var {var}")
-    sci_timeseries_plot(var, ds, depth_var=depth_var, base_path=base_path, show=show)
+    sci_timeseries_plot(
+        var, ds, depth_var=depth_var, base_path=base_path, show=show
+    )
     sci_timesection_gt_plot(
         var,
         ds,
@@ -1182,7 +1213,9 @@ def sci_spatialgrid_plot(
 
     # ax0.scatter(sci_ds.longitude, sci_ds.latitude, c=sci_ds[var], cmap=sci_vars[var])
     ds1 = ds.sortby("longitude")
-    ax1.pcolormesh(ds1.longitude, ds1.depth, adj_var(ds1, var), cmap=sci_vars[var])
+    ax1.pcolormesh(
+        ds1.longitude, ds1.depth, adj_var(ds1, var), cmap=sci_vars[var]
+    )
     ax1.set_ylabel("Depth [m]", size=label_size)
     ax1.set_xlabel("Longitude [Deg]", size=label_size)
     ax1.invert_yaxis()
@@ -1203,7 +1236,9 @@ def sci_spatialgrid_plot(
         label=adj_var_label(ds, var),
         size=label_size,
     )
-    fig.suptitle(f"Deployment {deployment} for project {project}", size=title_size)
+    fig.suptitle(
+        f"Deployment {deployment} for project {project}", size=title_size
+    )
 
     if base_path is not None:
         fname = os.path.join(
@@ -1274,8 +1309,12 @@ def eng_plots_to_make(ds: xr.Dataset):
             "X": ds["time"],
             "Y": [
                 ds["leak_detect"].rolling(time=900, min_periods=10).mean(),
-                ds["leak_detect_forward"].rolling(time=900, min_periods=10).mean(),
-                ds["leak_detect_science"].rolling(time=900, min_periods=10).mean(),
+                ds["leak_detect_forward"]
+                .rolling(time=900, min_periods=10)
+                .mean(),
+                ds["leak_detect_science"]
+                .rolling(time=900, min_periods=10)
+                .mean(),
             ],
             "C": ["C0", "C1", "C2"],
             "cb": None,
@@ -1324,14 +1363,15 @@ def eng_tvt_plot(
     """
 
     if key not in list(eng_dict.keys()):
-        raise ValueError(f"Variable name {key} not present in eng_dict. Skipping plot")
+        raise ValueError(
+            f"Variable name {key} not present in eng_dict. Skipping plot"
+        )
 
     deployment = ds.deployment_name
     _log.info(f"Making tvt plot for dictionary key {key}")
 
     fig, ax = plt.subplots(figsize=(8.5, 8.5))
 
-
     for i in range(len(eng_dict[key]["Y"])):
         if key == "oilVol":
             plot = ax.scatter(eng_dict[key]["X"], eng_dict[key]["Y"][i])
@@ -1360,7 +1400,9 @@ def eng_tvt_plot(
         fig.autofmt_xdate()
 
     if base_path is not None:
-        fname = os.path.join(base_path, tvt_path, f"{deployment}_{key}_engtvt.png")
+        fname = os.path.join(
+            base_path, tvt_path, f"{deployment}_{key}_engtvt.png"
+        )
         save_plot(fig, fname)
 
     if show:
@@ -1411,7 +1453,9 @@ def eng_timeseries_plot(
     ax.set_xlabel("Time", size=label_size)
     ax.set_ylabel(adj_var_label(ds, var), size=label_size)
     # ax.invert_yaxis()
-    ax.set_title(f"Deployment {deployment} for project {project}", size=title_size)
+    ax.set_title(
+        f"Deployment {deployment} for project {project}", size=title_size
+    )
 
     ax.scatter(ds.time, ds[var], s=3)
     ax.xaxis.set_major_formatter(mdates.DateFormatter("%m/%d %H:%M"))
@@ -1483,11 +1527,17 @@ def sci_timeseries_plot(
     ax.set_xlabel("Time", size=label_size)
     ax.set_ylabel("Depth [m]", size=label_size)
     ax.invert_yaxis()
-    ax.set_title(f"Deployment {deployment} for project {project}", size=title_size)
+    ax.set_title(
+        f"Deployment {deployment} for project {project}", size=title_size
+    )
 
-    p = ax.scatter(ds.time, ds[depth_var], c=adj_var(ds, var), cmap=sci_vars[var], s=3)
+    p = ax.scatter(
+        ds.time, ds[depth_var], c=adj_var(ds, var), cmap=sci_vars[var], s=3
+    )
     ax.xaxis.set_major_formatter(mdates.DateFormatter("%m/%d %H:%M"))
-    fig.colorbar(p, location="right").set_label(adj_var_label(ds, var), size=label_size)
+    fig.colorbar(p, location="right").set_label(
+        adj_var_label(ds, var), size=label_size
+    )
     fig.autofmt_xdate()
 
     if base_path is not None:
@@ -1571,10 +1621,14 @@ def sci_timesection_gt_plot(
     y = dat[depth_var]
 
     fig, ax = plt.subplots(figsize=(11, 8.5))
-    ax = gt.plot(x, y, adj_var(dat, var), cmap=sci_vars[var], ax=ax, robust=robust)
+    ax = gt.plot(
+        x, y, adj_var(dat, var), cmap=sci_vars[var], ax=ax, robust=robust
+    )
     ax.set_xlabel("Profile", size=label_size)
     ax.set_ylabel("Depth [m]", size=label_size)
-    ax.set_title(f"Deployment {deployment} for project {project}", size=title_size)
+    ax.set_title(
+        f"Deployment {deployment} for project {project}", size=title_size
+    )
 
     # Sometimes glidertools won't plot label, so guarantee it
     ax.cb.set_label(adj_var_label(ds, var), size=label_size)  # type: ignore
@@ -1662,7 +1716,9 @@ def ts_plot(
     # ax.set_ylabel("Potential temperature [°C]", size=label_size)
 
     if base_path is not None:
-        fname = os.path.join(base_path, ts_path, f"{deployment}_{var}_tsPlot.png")
+        fname = os.path.join(
+            base_path, ts_path, f"{deployment}_{var}_tsPlot.png"
+        )
         save_plot(fig, fname)
 
     if show:
@@ -1833,3 +1889,339 @@ def sci_surface_map(
     plt.close(fig)
 
     return fig
+
+
+def plot_qc_summary(
+    ds_qc,
+    plot_file,
+):
+    """
+    Create a stacked bar chart summarizing QARTOD
+    quality-control flag counts.
+
+    This function summarizes all time-varying QARTOD
+    ``*_qc`` variables contained in an xarray Dataset by
+    counting the number of GOOD, UNKNOWN, SUSPECT, FAIL,
+    and MISSING observations for each QC variable.
+
+    Parameters
+    ----------
+    ds_qc : xarray.Dataset
+        Dataset containing QARTOD ``*_qc`` variables.
+
+    plot_file : str or pathlib.Path
+        Output PNG filename.
+
+    Returns
+    -------
+    pandas.DataFrame
+        Summary table of QC flag counts used to generate
+        the stacked bar chart.
+    """
+
+    # EXCLUDE THESE VARIABLES
+    exclude_data_vars = {
+        "time",
+        "profile_time",
+        "time_uv",
+        "lat_uv",
+        "lon_uv",
+        "u",
+        "v",
+    }
+
+    # IDENTIFY VARIABLES FOR SUMMARY
+    qc_variables = []
+    for var in ds_qc.data_vars:
+        if not var.endswith("_qc"):
+            continue
+        data_var = var.replace("_qc", "")
+        if data_var in exclude_data_vars:
+            continue
+        qc_variables.append(var)
+
+    # BUILD SUMMARY TABLE
+    summary = []
+    for var in qc_variables:
+        flags = ds_qc[var].values.ravel()
+        # REMOVE FILL VALUES
+        flags = flags[flags != -127]
+        if len(flags) == 0:
+            continue
+        summary.append(
+            {
+                "variable": var.replace("_qc", ""),
+                "GOOD": np.sum(flags == 1),
+                "UNKNOWN": np.sum(flags == 2),
+                "SUSPECT": np.sum(flags == 3),
+                "FAIL": np.sum(flags == 4),
+                "MISSING": np.sum(flags == 9),
+            }
+        )
+    summary_df = pd.DataFrame(summary)
+
+    # RETURN EARLY IF THERE IS NOTHING TO PLOT
+    if summary_df.empty:
+        return summary_df
+
+    # CREATE FIGURE
+    fig, ax = plt.subplots(figsize=(max(12, 1.1 * len(summary_df)), 10))
+    totals = (
+        summary_df["GOOD"]
+        + summary_df["UNKNOWN"]
+        + summary_df["SUSPECT"]
+        + summary_df["FAIL"]
+        + summary_df["MISSING"]
+    )
+
+    bottom = np.zeros(len(summary_df))
+
+    # PLOT STACKED BAR SEGMENTS
+    for flag in QC_FLAG_NAMES:
+        heights = summary_df[flag]
+        ax.bar(
+            summary_df["variable"],
+            heights,
+            bottom=bottom,
+            color=QC_FLAG_NAMES[flag],
+            width=0.7,
+            label=flag,
+        )
+
+        percentages = 100 * heights / totals
+
+        # LABEL BARS SEGMENTS
+        for i, (height, pct) in enumerate(zip(heights, percentages)):
+            # SKIP EMPTY SEGMENTS
+            if height == 0:
+                continue
+            # SKIP LABELS SMALLER THAN 2%
+            if pct < 2:
+                continue
+            if pct >= 10:
+                ax.text(
+                    i,
+                    bottom[i] + height / 2,
+                    f"{pct:.0f}%",
+                    ha="center",
+                    va="center",
+                    fontsize=10,
+                    color="white",
+                    fontweight="bold",
+                )
+            else:
+                ax.text(
+                    i,
+                    bottom[i] + height / 2,
+                    f"{pct:.0f}%",
+                    ha="center",
+                    va="center",
+                    fontsize=9,
+                    color="black",
+                )
+        bottom += heights
+
+    # ADD TOTAL OBSERVATIONS ONLY IF THEY DIFFER
+    if len(np.unique(totals)) > 1:
+        y_offset = totals.max() * 0.01
+        for i, total in enumerate(totals):
+            ax.text(
+                i,
+                total + y_offset,
+                f"n={total:,}",
+                ha="center",
+                va="bottom",
+                fontsize=11,
+            )
+        title = f"QARTOD QC Flag Summary\n" f"{Path(plot_file).stem}"
+        ax.set_ylim(
+            0,
+            totals.max() * 1.08,
+        )
+    else:
+        title = (
+            f"QARTOD QC Flag Summary\n"
+            f"{Path(plot_file).stem}\n"
+            f"Total observations per variable: "
+            f"{totals.iloc[0]:,}"
+        )
+        ax.set_ylim(
+            0,
+            totals.max() * 1.05,
+        )
+
+    ax.set_ylabel(
+        "Number of observations",
+        fontsize=12,
+    )
+    ax.set_xlabel(
+        "Variable",
+        fontsize=12,
+    )
+    ax.set_title(
+        title,
+        fontsize=15,
+    )
+    ax.legend(
+        title="QC Flag",
+        loc="upper left",
+        bbox_to_anchor=(1.02, 1),
+        frameon=False,
+        fontsize=11,
+        title_fontsize=12,
+    )
+    plt.xticks(
+        rotation=45,
+        ha="right",
+        fontsize=11,
+    )
+    plt.yticks(
+        fontsize=11,
+    )
+    plt.tight_layout()
+    save_plot(
+        fig,
+        plot_file,
+    )
+    plt.close(fig)
+
+    return summary_df
+
+
+def plot_qc_timeseries(
+    ds_qc,
+    output_dir,
+    deployment_name=None,
+):
+    """
+    Plot the location of QARTOD QC flags throughout a glider
+    deployment.
+
+    A separate figure is generated for every ``*_qc`` variable.
+    Observations are plotted in time-depth space and colored by
+    their QARTOD quality flag.
+
+    Parameters
+    ----------
+    ds_qc : xarray.Dataset
+        Dataset containing ``time``, ``depth``, and QARTOD
+        ``*_qc`` variables.
+
+    output_dir : str or pathlib.Path
+        Directory where PNG files will be written.
+
+    deployment_name : str, optional
+        Deployment identifier to include in each figure title.
+        If omitted, only the variable name is displayed.
+
+    Returns
+    -------
+    None
+    """
+
+    # CREATE OUTPUT DIR
+    output_dir = Path(output_dir)
+    output_dir.mkdir(parents=True, exist_ok=True)
+
+    # EXCLUDE THESE VARIABLES
+    exclude_data_vars = {
+        "time",
+        "profile_time",
+        "time_uv",
+        "lat_uv",
+        "lon_uv",
+        "u",
+        "v",
+    }
+
+    # IDENTIFY QC VARIABLES TO PLOT
+    qc_variables = []
+    for var in ds_qc.data_vars:
+        if not var.endswith("_qc"):
+            continue
+        data_var = var.replace("_qc", "")
+        if data_var in exclude_data_vars:
+            continue
+        qc_variables.append(var)
+
+    # CREATE ONE FIGURE FOR EACH QC VARIABLE
+    for qc_var in qc_variables:
+        data_var = qc_var.replace("_qc", "")
+
+        # SKIP VARIABLES THAT DO NOT HAVE A
+        # CORRESPONDING SCIENCE VARIABLE
+        if data_var not in ds_qc:
+            continue
+
+        # EXTRACT THE TIME, DEPTH, AND QC FLAGS
+        time = ds_qc["time"].values
+        depth = ds_qc["depth"].values
+        flags = ds_qc[qc_var].values
+
+        # REMOVE OBSERVATIONS WITH INVALID DEPTHS
+        # OR NETCDF FILL VALUES
+        valid = np.isfinite(depth) & (flags != -127)
+        time = time[valid]
+        depth = depth[valid]
+        flags = flags[valid]
+
+        # CREATE THE FIGURE
+        fig, ax = plt.subplots(figsize=(14, 8))
+
+        # PLOT EACH QARTOD FLAG SEPARATELY SO THAT
+        # OBSERVATIONS CAN BE COLOR-CODED BY FLAG
+        for flag in [1, 2, 3, 4, 9]:
+            mask = flags == flag
+            if np.any(mask):
+                ax.scatter(
+                    time[mask],
+                    depth[mask],
+                    s=18,
+                    color=QC_COLORS[flag],
+                    edgecolors="none",
+                )
+
+        ax.invert_yaxis()
+        ax.set_xlabel("Time")
+        ax.set_ylabel("Depth (m)")
+
+        # BUILD FIGURE TITLE
+        if deployment_name is None:
+            title = f"{data_var} QARTOD QC Flags"
+        else:
+            title = f"{deployment_name}\n" f"{data_var} QARTOD QC Flags"
+
+        ax.set_title(title)
+
+        # FORMAT X-AXIS AS MM/DD HH:MM
+        ax.xaxis.set_major_formatter(mdates.DateFormatter("%m/%d %H:%M"))
+
+        fig.autofmt_xdate()
+
+        # MAKE CUSTOM LEGEND
+        legend_handles = [
+            mlines.Line2D(
+                [],
+                [],
+                color=QC_COLORS[f],
+                marker="o",
+                linestyle="None",
+                markersize=6,
+                label=QC_LABELS[f],
+            )
+            for f in QC_LABELS
+        ]
+        ax.legend(
+            handles=legend_handles,
+            title="QC Flag",
+            loc="upper left",
+            bbox_to_anchor=(1.02, 1),
+            frameon=False,
+        )
+
+        plt.tight_layout()
+        save_plot(
+            fig,
+            output_dir / f"{data_var}_qc_timeseries.png",
+        )
+        plt.close(fig)
diff --git a/esdglider/qartod.py b/esdglider/qartod.py
new file mode 100644
index 0000000..bf6ecff
--- /dev/null
+++ b/esdglider/qartod.py
@@ -0,0 +1,1611 @@
+"""
+QARTOD quality control utilities for esdglider.
+
+Author
+------
+Madison Richardson, NOAA CoastWatch West Coast Node
+
+Overview
+--------
+This module provides an operational implementation of the
+IOOS QARTOD (Quality Assurance of Real-Time Oceanographic
+Data) framework for ESD Glider science datasets.
+
+The workflow is designed to operate on fully processed
+science NetCDF files and generate DAC-compliant quality
+control variables using the ``ioos_qc`` package. Quality
+control tests are configured through a YAML-based
+configuration file and applied to all eligible variables
+containing a time dimension.
+
+The resulting QC flags are aggregated into DAC-compliant
+*_qc variables, linked to their parent variables through
+the ancillary_variables attribute, and written to a QC-enhanced
+NetCDF file suitable for GliderDAC submission and downstream
+scientific analysis. In addition to QC generation, this
+module provides utilities for creating deployment-level QC
+summary tables from combined QARTOD datasets. Visualization
+of QC results is implemented separately in the companion
+plots.py module.
+
+Workflow
+--------
+The operational QARTOD workflow performs the following
+steps:
+
+1. Open the input science NetCDF dataset.
+2. Identify variables eligible for QARTOD testing.
+3. Load the YAML QARTOD configuration.
+4. Automatically generate default QC configurations.
+5. Compute deployment-specific thresholds.
+6. Construct the ioos_qc.config.Config object.
+7. Execute configured QARTOD tests.
+8. Generate aggregate DAC-compliant ``*_qc`` variables.
+9. Create placeholder QC variables for metadata time
+   variables that are not evaluated by QARTOD.
+10. Update ``ancillary_variables`` attributes.
+11. Add QC provenance metadata.
+12. Write the QC-enhanced dataset to NetCDF.
+
+Key Features
+------------
+- IOOS QARTOD integration through ``ioos_qc``
+- YAML-based QC configuration
+- Automatic detection of time-varying variables
+- Support for both ``latitude``/``longitude`` and
+  ``lat``/``lon`` coordinate naming conventions
+- Automatic generation of default QC configurations
+  for unconfigured variables
+- Metadata-derived gross range thresholds using
+  ``valid_min`` and ``valid_max`` attributes
+- Aggregate QC flag generation following DAC
+  conventions
+- Placeholder QC variables for required metadata
+  fields
+- DAC-compliant ``standard_name`` generation
+- Preservation of existing
+  ``ancillary_variables`` metadata
+- Provenance tracking through
+  ``ioos_qc_version`` metadata
+- DAC-compliant NetCDF encoding using:
+    * int8 QC variables
+    * _FillValue = -127
+    * zlib compression
+- Deployment-level QC summary table generation
+- Plotting utilities implemented separately in the
+  companion ``plots.py`` module
+
+Generated QC Variables
+----------------------
+Science variables that undergo QARTOD testing receive
+aggregate QC variables in the form:
+
+    temperature      -> temperature_qc
+    conductivity     -> conductivity_qc
+    salinity         -> salinity_qc
+    oxygen_concentration -> oxygen_concentration_qc
+
+Metadata time variables receive placeholder QC
+variables populated with the DAC fill value (-127):
+
+    time         -> time_qc
+    profile_time -> profile_time_qc
+    time_uv      -> time_uv_qc
+
+Dependencies
+------------
+- numpy
+- xarray
+- PyYAML
+- ioos_qc
+
+References
+----------
+IOOS QARTOD:
+https://ioos.noaa.gov/project/qartod/
+
+ioos_qc Documentation:
+https://ioos.github.io/ioos_qc/
+
+GliderDAC:
+https://gliderdac.ioos.us/
+
+Notes
+-----
+This module is intended for operational processing within
+the ESD Glider workflow and should be executed after
+science variables and metadata have been finalized. The
+companion plots.py module may be used after QARTOD processing
+to generate deployment-level QC summary figures, profile
+summary tables, and QC flag time-series visualizations.
+
+The generated QC variables follow IOOS DAC conventions
+for flag values, standard names, ancillary variable
+relationships, and NetCDF encodings.
+"""
+
+import logging
+import numpy as np
+import xarray as xr
+import pandas as pd
+import yaml
+import ioos_qc
+import json
+from ioos_qc.config import Config
+from ioos_qc.streams import XarrayStream
+from ioos_qc.results import collect_results
+
+# =========================================================
+# LOGGER
+# =========================================================
+
+_log = logging.getLogger(__name__)
+
+# =========================================================
+# QC STANDARD NAME
+# =========================================================
+
+
+def get_qc_standard_name(ds, var_name):
+    """
+    Generate a DAC-compliant QC standard_name attribute for a
+    quality control variable.
+
+    This function retrieves the parent variable's
+    ``standard_name`` attribute and appends
+    ``" status_flag"`` to create a CF- and IOOS
+    DAC-compliant QC standard name.
+
+    If the parent variable does not contain a
+    ``standard_name`` attribute, the variable name
+    itself is used as the base name.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Dataset containing the parent variable.
+
+    var_name : str
+        Name of the parent variable for which a QC
+        standard_name will be generated.
+
+    Returns
+    -------
+    str
+        DAC-compliant QC standard_name in the form:
+
+        ``"<standard_name> status_flag"``
+
+    This approach automatically preserves consistency
+    between the parent variable and its associated
+    QARTOD QC variable while avoiding the need for
+    a hard-coded variable mapping table.
+    """
+
+    # GET PARENT VARIABLE STANDARD NAME
+    standard_name = ds[var_name].attrs.get("standard_name", var_name)
+    # BUILD DAC-COMPLIANT QC STANDARD NAME
+    return f"{standard_name} status_flag"
+
+
+# =========================================================
+# FIND VARIABLES WITH TIME DIMENSION
+# =========================================================
+
+
+def find_time_variables(ds):
+    """
+    Identify dataset variables that are eligible for QARTOD
+    quality control testing.
+
+    This function scans all data variables in the dataset and
+    returns those that contain a time dimension and should
+    participate in the QARTOD workflow. Existing QC variables,
+    metadata variables, engineering variables, and redundant
+    coordinate variables are excluded.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input glider dataset.
+
+    Returns
+    -------
+    list
+        List of variables eligible for QARTOD testing.
+
+    Notes
+    -----
+    The following variable types are excluded:
+
+    - Existing QC variables (``*_qc``)
+    - Metadata variables that are not science observations
+    - Redundant coordinate variables (``latitude``,
+      ``longitude``)
+    - Variables without a time dimension
+    """
+
+    # INITIALIZE OUTPUT VARIABLE LIST
+    time_variables = []
+    # VARIABLES TO EXCLUDE FROM QARTOD PROCESSING
+    skip_variables = {
+        "trajectory",
+        "profile_id",
+        "profile_index",
+        "profile_direction",
+        "profile_time",
+        "time_uv",
+        "heading",
+        "pitch",
+        "roll",
+    }
+    # EVALUATE ALL DATA VARIABLES
+    for var in ds.data_vars:
+        # REQUIRE TIME DIMENSION
+        if "time" not in ds[var].dims:
+            continue
+
+        # SKIP EXISTING QC VARIABLES & EXCLUDED VARIABLES
+        if var.endswith("_qc") or var in skip_variables:
+            continue
+
+        time_variables.append(var)
+
+    _log.info("Found %d time variables for QC", len(time_variables))
+
+    return time_variables
+
+
+# =========================================================
+# LOAD YAML CONFIG
+# =========================================================
+
+
+def load_qartod_config(config_file):
+    """
+    Load and parse a YAML-based QARTOD configuration file.
+
+    This function reads a QARTOD configuration file from disk
+    and converts the YAML contents into a Python dictionary
+    that can be used to construct an ``ioos_qc.config.Config``
+    object.
+
+    The configuration file defines the variables to be
+    evaluated, the QARTOD tests to apply, and the associated
+    threshold values used during quality control processing.
+
+    Parameters
+    ----------
+    config_file : str
+        Path to the YAML QARTOD configuration file.
+
+    Returns
+    -------
+    dict
+        Parsed QARTOD configuration dictionary containing
+        all contexts, streams, tests, and threshold values
+        defined in the YAML file.
+
+    Notes
+    -----
+    The returned dictionary is later used to construct an
+    ``ioos_qc.config.Config`` object that drives execution
+    of the QARTOD workflow.
+    """
+
+    # READ YAML CONFIGURATION FILE
+    with open(config_file, "r") as f:
+        qc_config = f.read()
+
+    # PARSE YAML CONTENTS
+    config_dict = yaml.safe_load(qc_config)
+
+    _log.info("Loaded QARTOD config: %s", config_file)
+
+    return config_dict
+
+
+# =========================================================
+# DYNAMIC THRESHOLD CALCULATIONS
+# =========================================================
+
+
+def get_spike_thresholds(values):
+    """
+    Calculate deployment-specific spike test thresholds from the
+    observations being quality controlled.
+
+    This function computes the standard deviation of the valid
+    observations for a variable and derives the QARTOD spike test
+    thresholds from that statistic. The suspect threshold is defined
+    as one standard deviation of the deployment, while the fail
+    threshold is defined as two standard deviations.
+
+    The resulting thresholds are intended to be inserted into the
+    in-memory QARTOD configuration prior to constructing the
+    ``ioos_qc.config.Config`` object. This allows spike thresholds
+    to be computed dynamically for each deployment while leaving the
+    YAML configuration file unchanged.
+
+    Parameters
+    ----------
+    values : numpy.ndarray
+        One-dimensional array of observations for the variable being
+        evaluated. Missing values (NaNs) are ignored when calculating
+        the standard deviation.
+
+    Returns
+    -------
+    tuple
+        Tuple containing:
+
+        - suspect_threshold (numpy.float64)
+        - fail_threshold (numpy.float64)
+        - report string describing any issues encountered during
+        threshold calculation
+
+        If fewer than two valid observations are available, the
+        threshold values are returned as ``None``.
+
+    Notes
+    -----
+    - Thresholds are computed from the deployment currently being
+    quality controlled rather than from a historical reference
+    dataset.
+    - NaN values are excluded from the standard deviation
+    calculation.
+    - The threshold definitions follow the methodology used by the
+    IOOS Glider DAC threshold generation utilities:
+
+        suspect_threshold = 1 × std
+        fail_threshold = 2 × std
+
+    References
+    ----------
+    This function is based on the spike threshold calculation
+    implemented by the IOOS Glider DAC:
+
+    https://github.com/ioos/glider-dac/blob/main/glider_qc/glider_qc.py#L289-L318
+
+    IOOS Glider DAC:
+    https://ioos.noaa.gov/project/underwater-gliders/
+
+    IOOS QARTOD:
+    https://ioos.github.io/ioos_qc/api/ioos_qc.html
+    """
+    report_list = []
+    # IF VALUES IS NOT A NUMPY ARRAY, CONVERT IT TO ONE
+    if not isinstance(values, np.ndarray):
+        values = np.asarray(values)
+
+    # CHECK IF THERE ARE AT LEAST 2 VALID VALUES
+    # REMOVE NaN
+    valid_values = [x for x in values if not np.isnan(x)]
+
+    if len(valid_values) < 2:
+        _log.info("Not enough valid data for variance calculation.")
+        report_list.append("Not enough valid data for std calculation.")
+        return None, None, " ".join(report_list)
+    else:
+        std = np.nanstd(valid_values)
+
+    # DEFINE THE SUSPECT AND FAIL THRESHOLDS
+    suspect_threshold = np.float64(1.0 * std)
+    fail_threshold = np.float64(2.0 * std)
+
+    return suspect_threshold, fail_threshold, " ".join(report_list)
+
+
+def get_rate_of_change_threshold(values, times):
+    """
+    Calculate a deployment-specific rate-of-change threshold from the
+    observations being quality controlled.
+
+    This function computes the maximum rate of change between
+    consecutive observations after excluding values that lie outside
+    one standard deviation of the deployment mean. Restricting the
+    calculation to observations within one standard deviation reduces
+    the influence of anomalous values when estimating the threshold.
+
+    The resulting threshold is intended to be inserted into the
+    in-memory QARTOD configuration prior to constructing the
+    ``ioos_qc.config.Config`` object. This allows rate-of-change
+    thresholds to be computed dynamically for each deployment while
+    leaving the YAML configuration file unchanged.
+
+    To ensure consistency with the IOOS QARTOD
+    ``rate_of_change_test()``, rates of change are calculated in
+    observation units per second by converting timestamp differences
+    to elapsed seconds before computing the rate.
+
+    Parameters
+    ----------
+    values : numpy.ndarray
+        One-dimensional array of observations for the variable being
+        evaluated.
+
+    times : numpy.ndarray
+        One-dimensional array of timestamps corresponding to
+        ``values``. The time array is used to calculate the rate of
+        change between consecutive observations.
+
+    Returns
+    -------
+    tuple
+        Tuple containing:
+
+        - threshold (numpy.float64)
+        - report string describing any issues encountered during
+        threshold calculation
+
+        If insufficient valid observations are available, the
+        threshold value is returned as ``None``.
+
+    Notes
+    -----
+    - Thresholds are computed from the deployment currently being
+    quality controlled rather than from a historical reference
+    dataset.
+    - Observations outside one standard deviation of the deployment
+    mean are excluded prior to calculating the rate of change.
+    - The returned threshold is the maximum absolute rate of change
+    observed between consecutive filtered observations.
+    - Time differences are converted to elapsed seconds before
+    calculating rates of change so that the computed thresholds are
+    expressed in observation units per second, matching the
+    implementation used by ``ioos_qc.qartod.rate_of_change_test()``.
+    - This implementation differs slightly from the original IOOS
+    Glider DAC helper function to ensure the dynamically computed
+    thresholds are directly compatible with the IOOS QC test used by
+    this workflow.
+
+    References
+    ----------
+    This function is adapted from the rate-of-change threshold
+    calculation implemented by the IOOS Glider DAC:
+
+    https://github.com/ioos/glider-dac/blob/main/glider_qc/glider_qc.py#L233C5-L287C48
+
+    The rate-of-change calculation has been modified to express rates
+    in observation units per second, matching the implementation used
+    by ``ioos_qc.qartod.rate_of_change_test()``.
+
+    IOOS Glider DAC:
+    https://ioos.noaa.gov/project/underwater-gliders/
+
+    IOOS QARTOD:
+    https://ioos.github.io/ioos_qc/api/ioos_qc.html
+    """
+    report_list = []
+    message = (
+        "Insufficient data: both 'values' and 'times' "
+        "must have at least two elements."
+    )
+
+    if len(values) < 2 or len(times) < 2:
+        _log.info(message)
+        report_list.append(message)
+        return None, " ".join(report_list)
+
+    if (
+        np.sum(~np.isnan(values)) > 1
+    ):  # CHECK IF THERE ARE AT LEAST 2 VALID VALUES
+        std = np.nanstd(values)
+        mean = np.nanmean(values)
+    else:
+        report_list.append(
+            "Not enough valid data points for std and mean calculations."
+        )
+        return None, " ".join(report_list)
+
+    list_values = []
+    list_times = []
+    for nn, xx in enumerate(values):
+        if (xx > (mean - std)) and (xx < (mean + std)):
+            list_values.append(values[nn])
+            list_times.append(times[nn])
+
+    # ENSURE THERE ARE ENOUGH DATA POINTS TO COMPUTE THE RATE OF CHANGE
+    if len(list_values) < 2:
+        _log.info(message)
+        report_list.append(message)
+        return None, " ".join(report_list)
+
+    # CALCULATE RATE OF CHANGE IN OBSERVATION UNITS PER SECOND,
+    # MATCHING THE IMPLEMENATION USED BY ioos_qc.qartod.rate_of_change_test()
+    roc = np.abs(
+        np.diff(list_values)
+        / np.diff(list_times).astype("timedelta64[s]").astype(float)
+    )
+
+    # RETURN MAX RATE OF CHANGE
+    threshold = np.max(roc)
+
+    return threshold, " ".join(report_list)
+
+
+# =========================================================
+# AUTO-ADD VARIABLES TO CONFIG
+# =========================================================
+
+
+def add_missing_variables_to_config(
+    ds,
+    config_dict,
+    time_variables,
+):
+    """
+    Automatically create default QARTOD configurations for variables
+    that are present in the dataset but not explicitly defined in the
+    QARTOD YAML configuration.
+
+    This function ensures that all time-varying variables are eligible
+    for quality control processing, even if no variable-specific
+    thresholds have been provided. For variables containing
+    ``valid_min`` and ``valid_max`` attributes, these metadata values
+    are used to construct a default gross range test. If those
+    attributes are unavailable, a permissive fallback gross range test
+    is assigned to prevent workflow failures while still allowing the
+    variable to participate in the QARTOD workflow.
+
+    A default spike test is also added for all automatically configured
+    variables.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input glider dataset containing the variables that will be
+        evaluated by QARTOD.
+
+    config_dict : dict
+        Parsed QARTOD YAML configuration dictionary.
+
+    time_variables : list
+        List of dataset variables that contain a time dimension and are
+        eligible for QARTOD processing.
+
+    Returns
+    -------
+    dict
+        Updated configuration dictionary containing both the original
+        YAML-defined QARTOD settings and any automatically generated
+        configurations for previously undefined variables.
+
+    Notes
+    -----
+    - Variables already present in the YAML configuration are left
+      unchanged.
+    - When available, ``valid_min`` and ``valid_max`` attributes are
+      used to construct a default gross range test.
+    - The default fail range is expanded by one full data span beyond
+      the valid range on both sides.
+    - Variables lacking ``valid_min`` and ``valid_max`` attributes are
+      assigned permissive placeholder thresholds and a warning is
+      logged.
+    - Automatically generated thresholds should be reviewed and
+      replaced with scientifically appropriate values when possible.
+    """
+
+    # ACCESS STREAM CONFIGURATION SECTION
+    streams = config_dict["contexts"][0]["streams"]
+
+    # PROCESS ALL TIME-DEPENDENT VARIABLES
+    for var in time_variables:
+
+        # SKIP VARIABLES ALREADY DEFINED IN YAML
+        if var in streams:
+            continue
+
+        # BUILD GROSS RANGE TEST FROM
+        # VARIABLE METADATA
+        valid_min = ds[var].attrs.get("valid_min")
+        valid_max = ds[var].attrs.get("valid_max")
+        if valid_min is not None and valid_max is not None:
+
+            # CALCULATE DEFAULT FAIL RANGE
+            span = valid_max - valid_min
+            fail_min = valid_min - span
+            fail_max = valid_max + span
+
+            _log.warning(
+                "Variable '%s' is not defined in the QARTOD configuration. "
+                "Using valid_min/valid_max attributes to build default "
+                "gross range thresholds.",
+                var,
+            )
+
+            gross_range_config = {
+                "suspect_span": [
+                    float(valid_min),
+                    float(valid_max),
+                ],
+                "fail_span": [
+                    float(fail_min),
+                    float(fail_max),
+                ],
+            }
+        else:
+
+            # FALL BACK TO PERMISSIVE THRESHOLDS
+            _log.warning(
+                "Variable '%s' is not defined in the QARTOD configuration "
+                "and does not contain valid_min/valid_max attributes. "
+                "Using placeholder thresholds.",
+                var,
+            )
+
+            gross_range_config = {
+                "suspect_span": [-9999, 9999],
+                "fail_span": [-1e10, 1e10],
+            }
+
+        # CREATE DEFAULT QARTOD CONFIGURATION
+        streams[var] = {
+            "qartod": {
+                "gross_range_test": gross_range_config,
+                "spike_test": {
+                    "suspect_threshold": -9999,
+                    "fail_threshold": -9999,
+                },
+                "rate_of_change_test": {
+                    "threshold": -9999,
+                },
+            }
+        }
+    return config_dict
+
+
+# =========================================================
+# UPDATE DYNAMIC THRESHOLDS
+# =========================================================
+
+
+def update_dynamic_thresholds(
+    ds,
+    config_dict,
+):
+    """
+    Compute deployment-specific QARTOD thresholds and update the
+    in-memory configuration dictionary.
+
+    This function calculates deployment-specific thresholds for
+    supported QARTOD tests using the observations contained in the
+    current dataset. The computed thresholds replace the placeholder
+    values stored in the configuration dictionary prior to
+    constructing the ``ioos_qc.config.Config`` object.
+
+    The QARTOD YAML configuration file is treated as a template and
+    is never modified. Instead, the calculated thresholds are applied
+    only to the in-memory configuration dictionary used during the
+    current QC workflow.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input glider dataset containing the observations used to
+        calculate deployment-specific thresholds.
+
+    config_dict : dict
+        Parsed QARTOD configuration dictionary.
+
+    Returns
+    -------
+    dict
+        Updated configuration dictionary containing the
+        deployment-specific threshold values used during QARTOD
+        processing.
+
+    Notes
+    -----
+    Currently supported dynamic threshold calculations:
+
+    - spike_test
+    - rate_of_change_test
+    """
+
+    # ACCESS STREAM CONFIGURATION
+    streams = config_dict["contexts"][0]["streams"]
+
+    # PROCESS EACH CONFIGURED VARIABLE
+    for var_name, stream in streams.items():
+
+        # SKIP VARIABLES NOT PRESENT IN DATASET
+        if var_name not in ds:
+            continue
+
+        # SKIP SCALAR VARIABLES
+        if ds[var_name].ndim == 0:
+            _log.info(
+                "Skipping dynamic threshold calculation for "
+                "%s because it is scalar.",
+                var_name,
+            )
+            continue
+
+        # SKIP VARIABLES WITHOUT QARTOD CONFIGURATION
+        if "qartod" not in stream:
+            continue
+
+        qartod = stream["qartod"]
+
+        # SPIKE TEST
+        if "spike_test" in qartod:
+            suspect, fail, report = get_spike_thresholds(
+                ds[var_name].values,
+            )
+
+            if suspect is not None and fail is not None:
+                qartod["spike_test"]["suspect_threshold"] = float(suspect)
+                qartod["spike_test"]["fail_threshold"] = float(fail)
+                _log.info(
+                    "Updated spike thresholds for %s",
+                    var_name,
+                )
+
+            if report:
+                _log.info("%s: %s", var_name, report)
+
+        # RATE OF CHANGE TEST
+        if "rate_of_change_test" in qartod:
+            threshold, report = get_rate_of_change_threshold(
+                ds[var_name].values,
+                ds["time"].values,
+            )
+
+            if threshold is not None:
+                qartod["rate_of_change_test"]["threshold"] = float(threshold)
+                _log.info(
+                    "Updated rate_of_change threshold for %s",
+                    var_name,
+                )
+
+            if report:
+                _log.info("%s: %s", var_name, report)
+
+    return config_dict
+
+
+# =========================================================
+# BUILD IOOS_QC CONFIG
+# =========================================================
+
+
+def build_ioos_qc_config(config_dict):
+    """
+    Build an IOOS QC configuration object from a parsed
+    QARTOD configuration dictionary.
+
+    This function converts a Python dictionary containing
+    QARTOD configuration settings into an
+    ``ioos_qc.config.Config`` object that can be consumed
+    directly by the IOOS QC processing framework.
+
+    The resulting configuration object defines the variables,
+    tests, thresholds, and processing contexts that will be
+    evaluated when QARTOD quality control tests are executed.
+
+    Parameters
+    ----------
+    config_dict : dict
+        Parsed QARTOD configuration dictionary, typically
+        generated by ``load_qartod_config()``.
+
+    Returns
+    -------
+    ioos_qc.config.Config
+        Fully constructed IOOS QC configuration object used
+        to execute QARTOD tests through the ``ioos_qc``
+        framework.
+
+    Notes
+    -----
+    The configuration dictionary is converted into an
+    ``ioos_qc.config.Config`` object because the
+    ``ioos_qc`` processing engine expects a Config
+    instance rather than a raw Python dictionary.
+    """
+
+    config = Config(config_dict)
+
+    _log.info("Built ioos_qc Config")
+
+    return config
+
+
+# =========================================================
+# RUN QARTOD TESTS
+# =========================================================
+
+
+def run_qartod_tests(ds, config):
+    """
+    Run configured IOOS QARTOD tests on a glider dataset.
+
+    This function creates an ``ioos_qc.XarrayStream`` from the
+    input dataset and executes all QARTOD tests defined in the
+    provided configuration. The function automatically detects
+    whether the dataset uses ``latitude``/``longitude`` or
+    ``lat``/``lon`` coordinate names and passes the appropriate
+    variables to ``ioos_qc``.
+
+    The resulting QARTOD outputs are collected into a flat list
+    of test result objects which can subsequently be grouped and
+    aggregated into DAC-compatible ``*_qc`` variables.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input glider science dataset containing the variables
+        to be evaluated by QARTOD. The dataset must contain a
+        ``time`` coordinate and may optionally contain
+        ``pressure``, ``latitude``/``longitude``, or
+        ``lat``/``lon`` coordinate variables.
+
+    config : ioos_qc.config.Config
+        Fully constructed IOOS QC configuration object
+        containing the QARTOD tests and thresholds to apply.
+
+    Returns
+    -------
+    list
+        List of collected QARTOD test result objects returned
+        by ``ioos_qc.results.collect_results()``. Each result
+        contains the variable name, test name, and associated
+        quality flags.
+    """
+
+    # DETERMINE LATITUDE VARIABLE
+    if "latitude" in ds:
+        lat_var = "latitude"
+    elif "lat" in ds:
+        lat_var = "lat"
+    else:
+        lat_var = None
+
+    # DETERMINE LONGITUDE VARIABLE
+    if "longitude" in ds:
+        lon_var = "longitude"
+    elif "lon" in ds:
+        lon_var = "lon"
+    else:
+        lon_var = None
+
+    # CREATE IOOS QC STREAM
+    stream = XarrayStream(
+        ds,
+        time="time",
+        z="pressure",
+        lat=lat_var,
+        lon=lon_var,
+    )
+
+    # RUN CONFIGURED QARTOD TESTS
+    results = stream.run(config)
+
+    # COLLECT RESULTS INTO A FLAT LIST
+    collected = collect_results(results, how="list")
+
+    _log.info("Collected %d QARTOD test results", len(collected))
+
+    return collected
+
+
+# =========================================================
+# GROUP RESULTS
+# =========================================================
+
+
+def group_qartod_results(ds, collected):
+    """
+    Group individual QARTOD test results by variable name.
+
+    This function reorganizes the raw QARTOD test results
+    returned by ``ioos_qc`` into a dictionary structure
+    where all test outputs associated with a given variable
+    are grouped together.
+
+    The grouped results are subsequently used to create
+    aggregate QC variables by combining the individual
+    QARTOD test flags into a single DAC-compliant
+    ``*_qc`` variable for each dataset variable.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input glider dataset containing the variables
+        that were evaluated during QARTOD processing.
+
+    collected : list
+        List of collected QARTOD test results generated
+        by ``ioos_qc.results.collect_results()``.
+
+    Returns
+    -------
+    dict
+        Dictionary containing grouped QARTOD test flags.
+
+        Dictionary structure:
+
+        .. code-block:: python
+
+            {
+                "temperature": [
+                    gross_range_flags,
+                    spike_flags,
+                    flat_line_flags
+                ],
+                "conductivity": [
+                    gross_range_flags,
+                    spike_flags
+                ]
+            }
+
+        Each dictionary key represents a dataset variable
+        and each value contains a list of flag arrays
+        generated by the individual QARTOD tests applied
+        to that variable.
+
+    Notes
+    -----
+    The ``ioos_qc`` framework returns results as individual
+    test objects. This function consolidates those objects
+    into a variable-centric structure that is easier to
+    process when generating aggregate QC variables.
+
+    Missing values within QARTOD result arrays are replaced
+    with the IOOS QARTOD flag value:
+
+    - 2 = NOT_EVALUATED
+
+    All flags are converted to ``int8`` to maintain
+    consistency with IOOS DAC QC variable requirements.
+
+    Variables that are not present in the dataset are
+    ignored to prevent creation of orphan QC results.
+    """
+
+    # INITIALIZE OUTPUT DICTIONARY
+    grouped_results = {}
+
+    # PROCESS COLLECTED QARTOD RESULTS
+    for result in collected:
+
+        # EXTRACT VARIABLE NAME
+        var_name = str(result.stream_id).split(":")[0]
+
+        # VERIFY VARIABLE EXISTS IN DATASET
+        if var_name not in ds.variables:
+            continue
+
+        # INITIALIZE VARIABLE ENTRY
+        if var_name not in grouped_results:
+            grouped_results[var_name] = []
+
+        # CONVERT FLAGS TO INT8
+        flags = result.results.filled(2).astype("int8")
+
+        # STORE TEST FLAGS
+        grouped_results[var_name].append(flags)
+
+    return grouped_results
+
+
+# =========================================================
+# BUILD FLAG CONFIGURATION
+# =========================================================
+
+
+def build_flag_configuration(config_dict, var_name):
+    """
+    Build the QARTOD configuration provenance stored in the
+    ``flag_configuration`` attribute.
+
+    Parameters
+    ----------
+    config_dict : dict
+        Parsed QARTOD configuration dictionary containing the
+        deployment-specific thresholds used during the current
+        QC workflow.
+
+    var_name : str
+        Variable name.
+
+    Returns
+    -------
+    str
+        JSON-formatted string containing the QARTOD configuration
+        used to generate the aggregate QC variable.
+    """
+
+    streams = config_dict["contexts"][0]["streams"]
+
+    flag_configuration = {
+        "configuration_source": "template_modified_in_memory",
+        "configuration_template": "qartod-config.yml",
+        "threshold_source": ("computed_from_current_deployment_statistics"),
+    }
+
+    if var_name in streams and "qartod" in streams[var_name]:
+        flag_configuration.update(streams[var_name]["qartod"])
+
+    return json.dumps(flag_configuration, separators=(",", ":"))
+
+
+# =========================================================
+# CREATE AGGREGATE QC VARIABLES
+# =========================================================
+
+
+def create_qc_variables(
+    ds,
+    grouped_results,
+    config_dict,
+    overwrite_qc=True,
+):
+    """
+    Create aggregate DAC-compliant QARTOD QC variables.
+
+    This function combines the individual QARTOD test
+    results associated with each variable into a single
+    aggregate QC variable following IOOS DAC conventions.
+
+    For each variable, the most severe flag value from all
+    configured QARTOD tests is retained at each observation
+    using a maximum-value aggregation approach. The resulting
+    aggregate flags are written to a new *_qc variable, linked
+    back to the parent variable through the ancillary_variables
+    attribute, and include a serialized flag_configuration
+    attribute documenting the QARTOD configuration used to
+    generate the aggregate flags.
+
+    Existing QC variables may optionally be replaced when
+    ``overwrite_qc=True``.
+
+    Parameters
+    ----------
+    ds : xarray.Dataset
+        Input dataset containing the original science
+        variables.
+
+    grouped_results : dict
+        Dictionary of grouped QARTOD results generated by
+        ``group_qartod_results()``.
+
+        Expected structure:
+
+        .. code-block:: python
+
+            {
+                "temperature": [
+                    gross_range_flags,
+                    spike_flags,
+                    flat_line_flags
+                ],
+                "conductivity": [
+                    gross_range_flags,
+                    spike_flags
+                ]
+            }
+
+    config_dict : dict
+            Parsed QARTOD configuration dictionary containing the
+            deployment-specific threshold values used during the
+            current QC workflow. The configuration is used to record
+            QC provenance in the output ``*_qc`` variables.
+
+    overwrite_qc : bool, optional
+        If True, existing QC variables are removed and
+        replaced with newly generated aggregate QARTOD
+        variables. If False, existing QC variables are
+        preserved and skipped.
+
+    Returns
+    -------
+    xarray.Dataset
+        Copy of the input dataset containing the newly
+        generated aggregate QARTOD QC variables.
+    """
+
+    # CREATE WORKING COPY OF DATASET
+    ds_qc = ds.copy()
+
+    # PROCESS EACH VARIABLE WITH QARTOD RESULTS
+    for var_name, test_results in grouped_results.items():
+
+        _log.info("Creating QC for %s", var_name)
+
+        # AGGREGATE QARTOD FLAGS
+        final_flags = np.maximum.reduce(test_results).astype("int8")
+        qc_var = f"{var_name}_qc"
+
+        # HANDLE EXISTING QC VARIABLES
+        if qc_var in ds_qc.variables:
+
+            if overwrite_qc:
+                ds_qc = ds_qc.drop_vars(qc_var)
+                _log.info(
+                    "Overwriting %s",
+                    qc_var,
+                )
+            else:
+                continue
+
+        # CREATE AGGREGATE QC VARIABLE
+        ds_qc[qc_var] = xr.DataArray(
+            final_flags,
+            dims=ds[var_name].dims,
+            coords=ds[var_name].coords,
+            attrs={
+                "long_name": (
+                    "QARTOD aggregate quality flag for " f"{var_name}"
+                ),
+                "standard_name": get_qc_standard_name(ds, var_name),
+                "flag_values": np.array([1, 2, 3, 4, 9], dtype="int8"),
+                "flag_meanings": (
+                    "GOOD " "UNKNOWN " "SUSPECT " "FAIL " "MISSING"
+                ),
+                "valid_min": 1,
+                "valid_max": 9,
+                "comment": (
+                    "Aggregate QARTOD flag "
+                    "generated using "
+                    "ioos_qc package."
+                ),
+                "flag_configuration": build_flag_configuration(
+                    config_dict,
+                    var_name,
+                ),
+            },
+        )
+
+        # UPDATE ANCILLARY VARIABLE LINKS
+        existing = ds_qc[var_name].attrs.get("ancillary_variables", "")
+
+        if existing:
+            ds_qc[var_name].attrs[
+                "ancillary_variables"
+            ] = f"{existing} {qc_var}"
+        else:
+            ds_qc[var_name].attrs["ancillary_variables"] = qc_var
+
+    return ds_qc
+
+
+# =========================================================
+# CREATE PLACEHOLDER QC VARIABLES
+# =========================================================
+
+
+def create_placeholder_qc_variables(ds_qc):
+    """
+    Create DAC-compliant placeholder QC variables for
+    metadata time variables that are required by the
+    IOOS DAC but are not evaluated using QARTOD tests.
+
+    This function creates QC variables for metadata
+    variables such as ``time``, ``profile_time``, and
+    ``time_uv``. These variables do not undergo QARTOD
+    quality control testing but are still expected to
+    have corresponding QC variables in DAC-compliant
+    files.
+
+    The generated QC variables are populated entirely
+    with the DAC fill value (-127) to indicate that
+    no quality control evaluation has been performed.
+
+    Parameters
+    ----------
+    ds_qc : xarray.Dataset
+        Dataset containing previously generated QARTOD
+        QC variables and the original science variables.
+
+    Returns
+    -------
+    xarray.Dataset
+        Updated dataset containing placeholder QC
+        variables for metadata time variables.
+
+    Notes
+    -----
+    These variables are intentionally excluded from
+    QARTOD processing because they represent metadata
+    rather than measured environmental observations.
+
+    Placeholder QC variables are currently created for:
+
+    - time
+    - profile_time
+    - time_uv
+
+    The resulting QC variables:
+
+    - Use the DAC fill value (-127)
+    - Are stored as int8
+    - Include DAC-compliant QC metadata
+    - Are linked to the parent variable through the
+      ancillary_variables attribute
+
+    No QARTOD tests are performed on these variables.
+    """
+
+    # VARIABLES REQUIRING PLACEHOLDER QC FLAGS
+    placeholder_qc_vars = ["time", "profile_time", "time_uv"]
+
+    # PROCESS EACH PLACEHOLDER VARIABLE
+    for var_name in placeholder_qc_vars:
+
+        # VERIFY VARIABLE EXISTS
+        if var_name not in ds_qc.variables:
+            continue
+
+        qc_var = f"{var_name}_qc"
+
+        _log.info("Creating placeholder QC %s", qc_var)
+
+        # CREATE EMPTY QC FLAGS
+        flags = xr.full_like(ds_qc[var_name], fill_value=-127, dtype="int8")
+
+        # CREATE PLACEHOLDER QC VARIABLE
+        ds_qc[qc_var] = xr.DataArray(
+            flags,
+            dims=ds_qc[var_name].dims,
+            coords=ds_qc[var_name].coords,
+            attrs={
+                "long_name": f"{var_name} Quality Flag",
+                "standard_name": get_qc_standard_name(ds_qc, var_name),
+                "flag_values": np.array([1, 2, 3, 4, 9], dtype="int8"),
+                "flag_meanings": (
+                    "GOOD " "UNKNOWN " "SUSPECT " "FAIL " "MISSING"
+                ),
+                "valid_min": 1,
+                "valid_max": 9,
+            },
+        )
+
+        # UPDATE ANCILLARY VARIABLE LINK
+        ds_qc[var_name].attrs["ancillary_variables"] = qc_var
+
+    return ds_qc
+
+
+# =========================================================
+# SAVE QC DATASET
+# =========================================================
+
+
+def save_qc_dataset(
+    ds_qc,
+    output_file,
+):
+    """
+    Save a QC-enhanced dataset to a NetCDF file using
+    DAC-compliant QC variable encodings.
+
+    This function prepares a QC-enhanced dataset for
+    NetCDF export by removing inherited encodings and
+    applying standardized encodings to all generated
+    QC variables.
+
+    QC variables are written using the IOOS DAC
+    conventions for quality control flags, including
+    an ``int8`` data type and a fill value of ``-127``.
+
+    Parameters
+    ----------
+    ds_qc : xarray.Dataset
+        Dataset containing the original variables and
+        newly generated QARTOD QC variables.
+
+    output_file : str
+        Full path to the output NetCDF file.
+
+    Returns
+    -------
+    None
+
+    Notes
+    -----
+    Prior to writing the file, all inherited encodings
+    are removed to prevent conflicts with the custom QC
+    encodings applied during export.
+
+    QC variables are written with:
+
+    - int8 data type
+    - _FillValue = -127
+    - zlib compression enabled
+
+    Example QC variable encoding:
+
+    .. code-block:: python
+
+        {
+            "dtype": "int8",
+            "_FillValue": np.int8(-127),
+            "zlib": True
+        }
+
+    The resulting file is written using:
+
+    - NETCDF4 format
+    - netcdf4 engine
+
+    This ensures compatibility with IOOS DAC
+    requirements while minimizing file size through
+    compression.
+    """
+
+    # REMOVE INHERITED ENCODINGS
+    for var in ds_qc.variables:
+        ds_qc[var].encoding = {}
+
+    # BUILD QC VARIABLE ENCODINGS
+    encoding = {}
+
+    for var in ds_qc.data_vars:
+
+        # APPLY QC-SPECIFIC ENCODINGS
+        if var.endswith("_qc"):
+            encoding[var] = {
+                "dtype": "int8",
+                "_FillValue": np.int8(-127),
+                "zlib": True,
+            }
+
+    # WRITE NETCDF FILE
+    ds_qc.to_netcdf(
+        output_file,
+        engine="netcdf4",
+        format="NETCDF4",
+        encoding=encoding,
+    )
+
+    _log.info(
+        "Saved QC dataset: %s",
+        output_file,
+    )
+
+
+# =========================================================
+# CREATE QC SUMMARY TABLE
+# =========================================================
+
+
+def create_qc_summary_table(ds_qc):
+    """
+    Create a profile-level summary table of QARTOD
+    quality-control flags.
+
+    Parameters
+    ----------
+    ds_qc : xarray.Dataset
+        Combined deployment dataset containing
+        QARTOD QC variables.
+
+    Returns
+    -------
+    pandas.DataFrame
+        One row per profile containing the profile
+        filename, profile index, and the total number
+        of GOOD, UNKNOWN, SUSPECT, FAIL, and MISSING
+        flags.
+    """
+
+    # VARIABLES THAT ARE EXCLUDED
+    skip = {
+        "time_qc",
+        "profile_time_qc",
+        "time_uv_qc",
+    }
+
+    # IDENTIFY QC VARIABLES
+    qc_variables = [
+        var
+        for var in ds_qc.data_vars
+        if (
+            var.endswith("_qc")
+            and ds_qc[var].ndim > 0
+            and var not in skip
+        )
+    ]
+
+    profile_summary = []
+
+    # PROCESS EACH UNIQUE PROFILE IN THE DEPLOYMENT
+    for profile_name in np.unique(
+        ds_qc["profile"].values
+    ):
+
+        # SELECT ONLY OBS FROM THE CURRENT PROFILE
+        profile_ds = ds_qc.where(
+            ds_qc["profile"] == profile_name,
+            drop=True,
+        )
+        # GET THE PROFILE INDEX
+        profile_index = int(
+            np.ravel(
+                profile_ds["profile_index"].values
+            )[0]
+        )
+
+        # INITIALIZE QC FLAG COUNTS FOR THIS PROFILE
+        good = unknown = suspect = fail = missing = 0
+
+        # COUNT QC FLAGS ACROSS ALL VARIABLES IN THIS PROFILE
+        for var in qc_variables:
+            flags = profile_ds[var].values.ravel()
+            flags = flags[flags != -127]
+
+            # ACCUMULATE FLAG COUNTS
+            good += np.sum(flags == 1)
+            unknown += np.sum(flags == 2)
+            suspect += np.sum(flags == 3)
+            fail += np.sum(flags == 4)
+            missing += np.sum(flags == 9)
+
+        # SAVE THE PROFILE SUMMARY
+        profile_summary.append(
+            {
+                "profile": profile_name,
+                "profile_index": profile_index,
+                "GOOD": good,
+                "UNKNOWN": unknown,
+                "SUSPECT": suspect,
+                "FAIL": fail,
+                "MISSING": missing,
+            }
+        )
+
+    return pd.DataFrame(profile_summary)
+
+
+# =========================================================
+# MAIN DRIVER FUNCTION
+# =========================================================
+
+
+def run_qartod_qc(
+    input_file,
+    output_file,
+    config_file,
+    overwrite_qc=True,
+):
+    """
+    Execute the complete operational QARTOD quality control
+    workflow for a science NetCDF dataset.
+
+    This function serves as the primary entry point for the
+    QARTOD processing pipeline. It coordinates all workflow
+    steps required to generate DAC-compliant QC variables,
+    create placeholder QC variables for metadata fields,
+    add QC provenance metadata, and write a QC-enhanced
+    NetCDF output file.
+
+    The workflow performs the following operations:
+
+    1. Open the input science dataset
+    2. Identify variables eligible for QARTOD testing
+    3. Load the QARTOD YAML configuration
+    4. Automatically add missing variable configurations
+    5. Build the IOOS QC Config object
+    6. Execute QARTOD tests
+    7. Group test results by variable
+    8. Generate aggregate DAC-compliant QC variables
+    9. Add QC provenance metadata
+    10. Create placeholder QC variables
+    11. Save the QC-enhanced dataset
+
+    Parameters
+    ----------
+    input_file : str
+        Path to the input science NetCDF file.
+
+    output_file : str
+        Path to the output QC-enhanced NetCDF file.
+
+    config_file : str
+        Path to the YAML QARTOD configuration file.
+
+    overwrite_qc : bool, optional
+        If True, existing QC variables are removed and
+        replaced with newly generated aggregate QARTOD
+        variables. If False, existing QC variables are
+        preserved.
+
+    Returns
+    -------
+    None
+
+    Notes
+    -----
+    This function is designed to operate on fully
+    processed science datasets and should be executed
+    after all science variable calculations and metadata
+    updates have been completed.
+
+    The output dataset contains:
+
+    - Original science variables
+    - Aggregate QARTOD QC variables
+    - Placeholder QC variables for metadata fields
+    - Updated ancillary_variables attributes
+    - QARTOD provenance metadata
+
+    QC provenance currently includes:
+
+    - ioos_qc_version
+
+    The generated QC variables follow IOOS DAC
+    conventions including:
+
+    - DAC-compliant standard_name attributes
+    - Standardized flag values
+    - int8 data types
+    - _FillValue = -127
+
+    Example
+    -------
+    .. code-block:: python
+
+        run_qartod_qc(
+            input_file="deployment-sci.nc",
+            output_file="deployment-sci_qc.nc",
+            config_file="qartod-config.yml"
+        )
+
+    Result:
+
+    .. code-block:: text
+
+        deployment-sci_qc.nc
+
+    containing DAC-compliant aggregate QARTOD quality
+    control variables.
+    """
+
+    # LOAD INPUT DATASET
+    ds = xr.load_dataset(input_file)
+
+    # IDENTIFY VARIABLES FOR QARTOD PROCESSING
+    time_variables = find_time_variables(ds)
+
+    # LOAD QARTOD CONFIGURATION
+    config_dict = load_qartod_config(config_file)
+
+    # AUTO-GENERATE MISSING CONFIGURATIONS
+    config_dict = add_missing_variables_to_config(
+        ds,
+        config_dict,
+        time_variables,
+    )
+
+    # UPDATE DEPLOYMENT-SPECIFIC THRESHOLDS
+    config_dict = update_dynamic_thresholds(
+        ds,
+        config_dict,
+    )
+
+    # BUILD IOOS QC CONFIGURATION OBJECT
+    config = build_ioos_qc_config(config_dict)
+
+    # EXECUTE QARTOD TESTS
+    collected = run_qartod_tests(ds, config)
+
+    # GROUP RESULTS BY VARIABLE
+    grouped_results = group_qartod_results(ds, collected)
+
+    # CREATE AGGREGATE QC VARIABLES
+    ds_qc = create_qc_variables(
+        ds, grouped_results, config_dict, overwrite_qc=overwrite_qc
+    )
+
+    # ADD QC PROVENANCE METADATA
+    ds_qc.attrs["ioos_qc_version"] = ioos_qc.__version__
+
+    # CREATE PLACEHOLDER QC VARIABLES
+    ds_qc = create_placeholder_qc_variables(ds_qc)
+
+    # SAVE QC-ENHANCED DATASET
+    save_qc_dataset(ds_qc, output_file)
+
+    _log.info("Completed QARTOD QC workflow")
diff --git a/esdglider/utils.py b/esdglider/utils.py
index 335aa48..755bc3a 100644
--- a/esdglider/utils.py
+++ b/esdglider/utils.py
@@ -1651,4 +1651,58 @@ def check_dbdreader_c_extension():
     elif c_ext_status is None:
         _log.info("DBDREADER_C_EXTENSION is not set. Using package defaults")
     else:
-        _log.warning("DBDREADER_C_EXTENSION is set to an unexpected value: %s", c_ext_status)
\ No newline at end of file
+        _log.warning("DBDREADER_C_EXTENSION is set to an unexpected value: %s", c_ext_status)
+        
+        
+def combine_datasets(nc_dir):
+    """
+    Combine profile NetCDF files into a single xarray
+    Dataset.
+
+    Parameters
+    ----------
+    nc_dir : str or pathlib.Path
+        Directory containing NetCDF files.
+
+    Returns
+    -------
+    xarray.Dataset
+        Dataset containing all profiles concatenated
+        along the ``time`` dimension.
+    """
+
+    # CONVERT INPUT TO A PATH OBJECT
+    nc_dir = Path(nc_dir)
+
+    # FIND ALL NETCDF FILES
+    nc_files = sorted(nc_dir.glob("*.nc"))
+
+    if not nc_files:
+        raise FileNotFoundError(
+            f"No NetCDF files found in {nc_dir}"
+        )
+
+    deployment_datasets = []
+
+    # PROCESS EACH PROFILE FILE
+    for nc_file in nc_files:
+        ds = xr.open_dataset(nc_file)
+
+        # STORE THE PROFILE FILENAME FOR EACH OBSERVATION
+        profile_name = nc_file.stem.replace("_qc", "")
+        ds = ds.assign(
+            profile=xr.DataArray(
+                np.full(ds.sizes["time"], profile_name),
+                dims=("time",),
+            )
+        )
+        deployment_datasets.append(ds)
+
+    # COMBINE ALL PROFILES
+    deployment_ds = xr.concat(
+        deployment_datasets,
+        dim="time",
+        combine_attrs="override",
+    )
+
+    return deployment_ds
\ No newline at end of file
diff --git a/notebooks/qartod-qc-plots.ipynb b/notebooks/qartod-qc-plots.ipynb
new file mode 100644
index 0000000..12ea41f
--- /dev/null
+++ b/notebooks/qartod-qc-plots.ipynb
@@ -0,0 +1,2167 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "f07be0e2",
+   "metadata": {},
+   "source": [
+    "# Running the QARTOD workflow on a full deployment and creating plots + CSV file"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "8784e77c",
+   "metadata": {},
+   "source": [
+    "## Import packages"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "e0614310",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from pathlib import Path\n",
+    "\n",
+    "from esdglider.plots import (\n",
+    "    plot_qc_summary,\n",
+    "    plot_qc_timeseries,\n",
+    ")\n",
+    "from esdglider.qartod import (\n",
+    "    create_qc_summary_table,\n",
+    "    run_qartod_qc,\n",
+    ")\n",
+    "from esdglider.utils import combine_datasets"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "7894958e",
+   "metadata": {},
+   "source": [
+    "## Run QARTOD QC on every profile in the amlr08-20220513 deployment"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "76e50215",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T1858.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T1902.nc\n",
+      "Processing amlr08-20220513T1918.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T1925.nc\n",
+      "Processing amlr08-20220513T1946.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T1954.nc\n",
+      "Processing amlr08-20220513T2013.nc\n",
+      "Processing amlr08-20220513T2023.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T2045.nc\n",
+      "Processing amlr08-20220513T2059.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T2111.nc\n",
+      "Processing amlr08-20220513T2127.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T2157.nc\n",
+      "Processing amlr08-20220513T2227.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220513T2308.nc\n",
+      "Processing amlr08-20220513T2342.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0024.nc\n",
+      "Processing amlr08-20220514T0101.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0146.nc\n",
+      "Processing amlr08-20220514T0226.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0319.nc\n",
+      "Processing amlr08-20220514T0403.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0445.nc\n",
+      "Processing amlr08-20220514T0532.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0646.nc\n",
+      "Processing amlr08-20220514T0742.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T0834.nc\n",
+      "Processing amlr08-20220514T0933.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1051.nc\n",
+      "Processing amlr08-20220514T1154.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1251.nc\n",
+      "Processing amlr08-20220514T1352.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1503.nc\n",
+      "Processing amlr08-20220514T1602.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1700.nc\n",
+      "Processing amlr08-20220514T1800.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1911.nc\n",
+      "Processing amlr08-20220514T1918.nc\n",
+      "Processing amlr08-20220514T1926.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T1933.nc\n",
+      "Processing amlr08-20220514T1955.nc\n",
+      "Processing amlr08-20220514T2003.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T2010.nc\n",
+      "Processing amlr08-20220514T2017.nc\n",
+      "Processing amlr08-20220514T2037.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T2138.nc\n",
+      "Processing amlr08-20220514T2237.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220514T2337.nc\n",
+      "Processing amlr08-20220515T0102.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T0202.nc\n",
+      "Processing amlr08-20220515T0302.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T0401.nc\n",
+      "Processing amlr08-20220515T0544.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T0644.nc\n",
+      "Processing amlr08-20220515T0746.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T0845.nc\n",
+      "Processing amlr08-20220515T1000.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T1100.nc\n",
+      "Processing amlr08-20220515T1202.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T1259.nc\n",
+      "Processing amlr08-20220515T1427.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T1518.nc\n",
+      "Processing amlr08-20220515T1611.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T1700.nc\n",
+      "Processing amlr08-20220515T1815.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T1901.nc\n",
+      "Processing amlr08-20220515T1948.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T2027.nc\n",
+      "Processing amlr08-20220515T2203.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220515T2245.nc\n",
+      "Processing amlr08-20220515T2329.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0014.nc\n",
+      "Processing amlr08-20220516T0125.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0214.nc\n",
+      "Processing amlr08-20220516T0305.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0401.nc\n",
+      "Processing amlr08-20220516T0520.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0618.nc\n",
+      "Processing amlr08-20220516T0716.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0805.nc\n",
+      "Processing amlr08-20220516T0908.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T0957.nc\n",
+      "Processing amlr08-20220516T1051.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1132.nc\n",
+      "Processing amlr08-20220516T1234.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1306.nc\n",
+      "Processing amlr08-20220516T1341.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1417.nc\n",
+      "Processing amlr08-20220516T1510.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1528.nc\n",
+      "Processing amlr08-20220516T1549.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1606.nc\n",
+      "Processing amlr08-20220516T1641.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1647.nc\n",
+      "Processing amlr08-20220516T1704.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1710.nc\n",
+      "Processing amlr08-20220516T1727.nc\n",
+      "Processing amlr08-20220516T1733.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1749.nc\n",
+      "Processing amlr08-20220516T1756.nc\n",
+      "Processing amlr08-20220516T1811.nc\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n",
+      "Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Processing amlr08-20220516T1818.nc\n",
+      "Done!\n"
+     ]
+    }
+   ],
+   "source": [
+    "# Input directory\n",
+    "input_dir = Path(\n",
+    "    \"/Users/madisonrichardson/Desktop/esdglider/\"\n",
+    "    \"sam-nc-files/amlr08-20220513/\"\n",
+    "    \"processed-L1/ngdac/delayed/non-qc\"\n",
+    ")\n",
+    "\n",
+    "# Output directory\n",
+    "output_dir = Path(\n",
+    "    \"/Users/madisonrichardson/Desktop/esdglider/\"\n",
+    "    \"sam-nc-files/amlr08-20220513/\"\n",
+    "    \"processed-L1/ngdac/delayed/qc\"\n",
+    ")\n",
+    "\n",
+    "# Location of qartod-config.yml\n",
+    "config_file = (\n",
+    "    \"/Users/madisonrichardson/Desktop/esdglider-madi/\"\n",
+    "    \"esdglider/data/qartod-config.yml\"\n",
+    ")\n",
+    "\n",
+    "# Make sure output directory exists\n",
+    "output_dir.mkdir(\n",
+    "    parents=True,\n",
+    "    exist_ok=True,\n",
+    ")\n",
+    "\n",
+    "# Process each netcdf file\n",
+    "for input_file in sorted(input_dir.glob(\"*.nc\")):\n",
+    "    # Build output file name\n",
+    "    output_file = (\n",
+    "        output_dir\n",
+    "        / f\"{input_file.stem}_qc.nc\"\n",
+    "    )\n",
+    "    print(f\"Processing {input_file.name}\")\n",
+    "    try:\n",
+    "        # Run complete QARTOD workflow\n",
+    "        run_qartod_qc(\n",
+    "            input_file=str(input_file),\n",
+    "            output_file=str(output_file),\n",
+    "            config_file=config_file,\n",
+    "        )\n",
+    "    # Report files that fail without stopping workflow\n",
+    "    except Exception as e:\n",
+    "        print(f\"Failed: {input_file.name}\")\n",
+    "        print(e)\n",
+    "\n",
+    "print(\"Done!\")\n"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "66ec2bc1",
+   "metadata": {},
+   "source": [
+    "* This error: **Could not run \"qartod.rate_of_change_test: rate_of_change_test() missing 1 required positional argument: 'tinp'** is only because of trying to run this test on variable u_qc and v_qc, which can be disabled in the qartod-config.yml"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "bd63434f",
+   "metadata": {},
+   "source": [
+    "## Create deployment figures and CSV file"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "20e5c468",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Combining deployment QC datasets...\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/Users/madisonrichardson/Desktop/esdglider/esdglider/utils.py:1702: FutureWarning: In a future version of xarray the default value for data_vars will change from data_vars='all' to data_vars=None. This is likely to lead to different results when multiple datasets have matching variables with overlapping values. To opt in to new defaults and get rid of these warnings now use `set_options(use_new_combine_kwarg_defaults=True) or set data_vars explicitly.\n",
+      "  deployment_ds = xr.concat(\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Creating deployment QC summary table...\n",
+      "Creating deployment QC summary plot...\n",
+      "Writing deployment QC summary CSV...\n",
+      "Creating QC timeseries plots...\n",
+      "\n",
+      "Finished processing deployment.\n",
+      "Summary plot saved to:\n",
+      "/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/processed-L1/ngdac/delayed/plots/amlr08-20220513-deployment_qc_summary.png\n",
+      "Summary CSV saved to:\n",
+      "/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/processed-L1/ngdac/delayed/plots/amlr08-20220513-deployment_qc_summary.csv\n",
+      "Timeseries plots saved to:\n",
+      "/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/processed-L1/ngdac/delayed/plots\n",
+      "\n",
+      "Processed 22 QC variables across 102 profiles.\n"
+     ]
+    }
+   ],
+   "source": [
+    "# Directory of _qc.nc files\n",
+    "qc_dir = output_dir\n",
+    "\n",
+    "# Output directory for plots\n",
+    "plot_dir = (\n",
+    "    output_dir.parent\n",
+    "    / \"plots\"\n",
+    ")\n",
+    "plot_dir.mkdir(exist_ok=True)\n",
+    "\n",
+    "# Combine all profile nc files into single deployment dataset\n",
+    "print(\"Combining deployment QC datasets...\")\n",
+    "deployment_ds = combine_datasets(\n",
+    "    qc_dir,\n",
+    ")\n",
+    "\n",
+    "# Create summary table of all qc flags for deployment\n",
+    "print(\"Creating deployment QC summary table...\")\n",
+    "profile_summary_df = create_qc_summary_table(\n",
+    "    deployment_ds,\n",
+    ")\n",
+    "\n",
+    "# Create summary plot of all qc flags for deployment\n",
+    "print(\"Creating deployment QC summary plot...\")\n",
+    "summary_df = plot_qc_summary(\n",
+    "    deployment_ds,\n",
+    "    plot_file=(\n",
+    "        plot_dir\n",
+    "        / \"amlr08-20220513-deployment_qc_summary.png\"\n",
+    "    ),\n",
+    ")\n",
+    "\n",
+    "# Create a CSV with profile name, profile index, and qc flags\n",
+    "print(\"Writing deployment QC summary CSV...\")\n",
+    "profile_summary_df.to_csv(\n",
+    "    plot_dir\n",
+    "    / \"amlr08-20220513-deployment_qc_summary.csv\",\n",
+    "    index=False,\n",
+    ")\n",
+    "\n",
+    "# Create timeseries plots of qc flags for every variable with time dim\n",
+    "print(\"Creating QC timeseries plots...\")\n",
+    "plot_qc_timeseries(\n",
+    "    deployment_ds,\n",
+    "    output_dir=plot_dir,\n",
+    "    deployment_name=\"amlr08-20220513 Deployment\",\n",
+    ")\n",
+    "\n",
+    "print(\"\\nFinished processing deployment.\")\n",
+    "print(\n",
+    "    f\"Summary plot saved to:\\n\"\n",
+    "    f\"{plot_dir / 'amlr08-20220513-deployment_qc_summary.png'}\"\n",
+    ")\n",
+    "print(\n",
+    "    f\"Summary CSV saved to:\\n\"\n",
+    "    f\"{plot_dir / 'amlr08-20220513-deployment_qc_summary.csv'}\"\n",
+    ")\n",
+    "print(\n",
+    "    f\"Timeseries plots saved to:\\n\"\n",
+    "    f\"{plot_dir}\"\n",
+    ")\n",
+    "print(\n",
+    "    f\"\\nProcessed {len(summary_df)} QC variables \"\n",
+    "    f\"across {len(profile_summary_df)} profiles.\"\n",
+    ")"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "esdglider",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.13"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/notebooks/testing-qartod-module.ipynb b/notebooks/testing-qartod-module.ipynb
new file mode 100644
index 0000000..244a0ae
--- /dev/null
+++ b/notebooks/testing-qartod-module.ipynb
@@ -0,0 +1,132 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "91a7a626",
+   "metadata": {},
+   "source": [
+    "# Examples of using the QARTOD module"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "04312ca4",
+   "metadata": {},
+   "source": [
+    "## Create a new NetCDF with QARTOD flags"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "id": "0419103d",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "['latitude', 'longitude', 'lat', 'lon', 'profile_lat', 'profile_lon', 'lat_uv', 'lon_uv', 'pressure', 'depth', 'temperature', 'conductivity', 'salinity', 'density', 'u', 'v', 'potential_temperature', 'potential_density', 'chlorophyll', 'cdom', 'backscatter_700', 'oxygen_concentration', 'oxygen_saturation', 'water_velocity_eastward', 'water_velocity_northward', 'distance_over_ground']\n"
+     ]
+    }
+   ],
+   "source": [
+    "from esdglider.qartod import run_qartod_qc\n",
+    "\n",
+    "run_qartod_qc(\n",
+    "    input_file=\"/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/non-qc/amlr08-20220513T1858.nc\",\n",
+    "    output_file=\"/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/qc/amlr08-20220513T1858_qc.nc\",\n",
+    "    config_file=\"/Users/madisonrichardson/Desktop/esdglider-madi/esdglider/data/qartod-config.yml\"\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "28d2a7b0",
+   "metadata": {},
+   "source": [
+    "## Update an existing NetCDF file\n",
+    "\n",
+    "If a NetCDf already contains placeholder QC variables (or if you want to overwrite the file) the same file can be used as both input and output."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "id": "7024fd33",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Variable 'potential_temperature' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'potential_density' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'chlorophyll' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'cdom' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'backscatter_700' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_concentration' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'oxygen_saturation' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_eastward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'water_velocity_northward' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n",
+      "Variable 'distance_over_ground' is not defined in the QARTOD configuration and does not contain valid_min/valid_max attributes. Using placeholder thresholds.\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "['latitude', 'longitude', 'lat', 'lon', 'profile_lat', 'profile_lon', 'lat_uv', 'lon_uv', 'pressure', 'depth', 'temperature', 'conductivity', 'salinity', 'density', 'u', 'v', 'potential_temperature', 'potential_density', 'chlorophyll', 'cdom', 'backscatter_700', 'oxygen_concentration', 'oxygen_saturation', 'water_velocity_eastward', 'water_velocity_northward', 'distance_over_ground']\n"
+     ]
+    }
+   ],
+   "source": [
+    "from esdglider.qartod import run_qartod_qc\n",
+    "\n",
+    "run_qartod_qc(\n",
+    "    input_file=\"/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/non-qc/amlr08-20220513T2023.nc\",\n",
+    "    output_file=\"/Users/madisonrichardson/Desktop/esdglider/sam-nc-files/amlr08-20220513/non-qc/amlr08-20220513T2023.nc\",\n",
+    "    config_file=\"/Users/madisonrichardson/Desktop/esdglider-madi/esdglider/data/qartod-config.yml\",\n",
+    "    overwrite_qc=True\n",
+    ")"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "esdglider",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.13"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/pyproject.toml b/pyproject.toml
index 0b9684d..af51f56 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -11,6 +11,7 @@ license = "Apache-2.0"
 authors = [
   { name = "Sam Woodman", email = "sam.woodman@noaa.gov" },
   { name = "Caleb Flaim" },
+  { name = "Madison Richardson" },
 ]
 requires-python = ">=3.10"
 classifiers = [
@@ -33,6 +34,7 @@ dependencies = [
   "pyglider",
   "pyyaml",
   "xarray",
+  "ioos_qc",
 ]
 
 optional-dependencies.imagery = [