diff --git a/.github/workflows/flake8.yml b/.github/workflows/flake8.yml
index 8296b42..1f5be86 100644
--- a/.github/workflows/flake8.yml
+++ b/.github/workflows/flake8.yml
@@ -22,7 +22,7 @@ jobs:
         uses: "actions/checkout@v6"
 
       - name: Check for changed files
-        uses: dorny/paths-filter@v2
+        uses: dorny/paths-filter@v4
         id: changes
         with:
           list-files: "json"
diff --git a/.github/workflows/mypy.yml b/.github/workflows/mypy.yml
index 4b27c5d..2b5e4f8 100644
--- a/.github/workflows/mypy.yml
+++ b/.github/workflows/mypy.yml
@@ -27,7 +27,7 @@ jobs:
         uses: "actions/checkout@v6"
 
       - name: Check for changed files
-        uses: dorny/paths-filter@v2
+        uses: dorny/paths-filter@v4
         id: changes
         with:
           list-files: "json"
diff --git a/.github/workflows/python_ci.yml b/.github/workflows/python_ci.yml
index 69d3252..fa2aa04 100644
--- a/.github/workflows/python_ci.yml
+++ b/.github/workflows/python_ci.yml
@@ -34,7 +34,7 @@ jobs:
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
-        uses: dorny/paths-filter@v2
+        uses: dorny/paths-filter@v4
         id: changes
         with:
           list-files: "json"
diff --git a/.github/workflows/python_ci_linux.yml b/.github/workflows/python_ci_linux.yml
index e9a4537..3afec52 100644
--- a/.github/workflows/python_ci_linux.yml
+++ b/.github/workflows/python_ci_linux.yml
@@ -35,7 +35,7 @@ jobs:
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
-        uses: dorny/paths-filter@v2
+        uses: dorny/paths-filter@v4
         id: changes
         with:
           list-files: "json"
diff --git a/.github/workflows/python_ci_macos.yml b/.github/workflows/python_ci_macos.yml
index bae9216..2f7d7a7 100644
--- a/.github/workflows/python_ci_macos.yml
+++ b/.github/workflows/python_ci_macos.yml
@@ -34,7 +34,7 @@ jobs:
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
-        uses: dorny/paths-filter@v2
+        uses: dorny/paths-filter@v4
         id: changes
         with:
           list-files: "json"
diff --git a/README.rst b/README.rst
index 065ba60..c8f485c 100644
--- a/README.rst
+++ b/README.rst
@@ -4,8 +4,8 @@ Contributing Guide
 
 .. start short_desc
 
-**Contributing guide for repo-helper and associated projects**
+**Contributing guide for PyMassSpec and associated projects**
 
 .. end short_desc
 
-View online at https://contributing.repo-helper.uk
+View online at https://contributing-to-pyms.readthedocs.io
diff --git a/contributing/__init__.py b/contributing/__init__.py
index 50b7374..98627c8 100644
--- a/contributing/__init__.py
+++ b/contributing/__init__.py
@@ -2,7 +2,7 @@
 #
 #  __init__.py
 """
-Contributing guide for repo-helper and associated projects.
+Contributing guide for PyMassSpec and associated projects.
 """
 #
 #  Copyright © 2020-2021 Dominic Davis-Foster <dominic@davis-foster.co.uk>
diff --git a/doc-source/PyMassSpec_262.png b/doc-source/PyMassSpec_262.png
new file mode 100644
index 0000000..a3cd682
Binary files /dev/null and b/doc-source/PyMassSpec_262.png differ
diff --git a/doc-source/_templates/base.html b/doc-source/_templates/base.html
index b101b24..69b763e 100644
--- a/doc-source/_templates/base.html
+++ b/doc-source/_templates/base.html
@@ -2,4 +2,5 @@
 {% extends "!base.html" %}
 {% block extrahead %}
 	<link href="{{ pathto("_static/style.css", True) }}" rel="stylesheet" type="text/css">
+	<link rel=icon href=https://pymassspec.github.io/assets/PyMassSpec.ico sizes="48x48" type="image/vnd.microsoft.icon">
 {% endblock %}
diff --git a/doc-source/conf.py b/doc-source/conf.py
index 1b1e520..a9d85cb 100644
--- a/doc-source/conf.py
+++ b/doc-source/conf.py
@@ -102,4 +102,5 @@ def setup(app):
 nitpicky = True
 del version
 del release
-html_title = "repo-helper Contributing Guide"
+html_title = "PyMassSpec Contributing Guide"
+html_logo = "PyMassSpec_262.png"
diff --git a/doc-source/getting-started.rst b/doc-source/getting-started.rst
index 052b182..e84c6f6 100644
--- a/doc-source/getting-started.rst
+++ b/doc-source/getting-started.rst
@@ -49,7 +49,7 @@ With bash:
 
 .. code-block:: bash
 
-	(repo-helper) $
+	(PyMassSpec) $
 
 
 .. _GitHub: https://github.com/
diff --git a/doc-source/index.rst b/doc-source/index.rst
index d9a1f7d..ebbff2a 100644
--- a/doc-source/index.rst
+++ b/doc-source/index.rst
@@ -23,3 +23,7 @@ Contributing Guide
 	documentation
 	building
 	release-process
+
+.. sidebar-links::
+	:caption: Links
+	:github:
diff --git a/justfile b/justfile
index 9cd8b78..4307956 100644
--- a/justfile
+++ b/justfile
@@ -23,3 +23,8 @@ bare-ignore:
 
 lint: unused-imports incomplete-defs bare-ignore
 	tox -n qa
+
+uncomm:
+  git status -uall --ignored
+
+# Custom commands can be added below this comment
diff --git a/pyproject.toml b/pyproject.toml
index 16db69b..ed1781e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "whey"
 [project]
 name = "contributing"
 version = "2021.0.0"
-description = "Contributing guide for repo-helper and associated projects"
+description = "Contributing guide for PyMassSpec and associated projects"
 readme = "README.rst"
 keywords = []
 dynamic = [ "requires-python", "classifiers", "dependencies",]
@@ -18,10 +18,10 @@ name = "Dominic Davis-Foster"
 email = "dominic@davis-foster.co.uk"
 
 [project.urls]
-Homepage = "https://github.com/repo-helper/contributing"
-"Issue Tracker" = "https://github.com/repo-helper/contributing/issues"
-"Source Code" = "https://github.com/repo-helper/contributing"
-Documentation = "https://contributing.repo-helper.uk"
+Homepage = "https://github.com/PyMassSpec/contributing"
+"Issue Tracker" = "https://github.com/PyMassSpec/contributing/issues"
+"Source Code" = "https://github.com/PyMassSpec/contributing"
+Documentation = "https://contributing-to-pyms.readthedocs.io"
 
 [tool.whey]
 base-classifiers = []
@@ -33,7 +33,7 @@ license-key = "MIT"
 [tool.importcheck]
 
 [tool.sphinx-pyproject]
-github_username = "repo-helper"
+github_username = "PyMassSpec"
 github_repository = "contributing"
 author = "Dominic Davis-Foster"
 project = "contributing"
diff --git a/repo_helper.yml b/repo_helper.yml
index 902445b..b6aa5ba 100644
--- a/repo_helper.yml
+++ b/repo_helper.yml
@@ -4,11 +4,11 @@ modname: 'contributing'
 copyright_years: '2020-2021'
 author: 'Dominic Davis-Foster'
 email: 'dominic@davis-foster.co.uk'
-username: 'repo-helper'
+username: 'PyMassSpec'
 assignee: 'domdfcoding'
 version: '2021.0.0'
 license: 'MIT'
-short_desc: 'Contributing guide for repo-helper and associated projects'
+short_desc: 'Contributing guide for PyMassSpec and associated projects'
 
 use_whey: True
 docs_fail_on_warning: true
@@ -16,7 +16,8 @@ sphinx_html_theme: furo
 enable_tests: false
 enable_conda: false
 on_pypi: false
-docs_url: https://contributing.repo-helper.uk
+docs_url: https://contributing-to-pyms.readthedocs.io
+preserve_custom_theme: true
 
 python_versions:
  - '3.8'
@@ -25,7 +26,8 @@ sphinx_conf_epilogue:
  - nitpicky = True
  - del version
  - del release
- - html_title = "repo-helper Contributing Guide"
+ - html_title = "PyMassSpec Contributing Guide"
+ - html_logo = "PyMassSpec_262.png"
 
 extra_sphinx_extensions:
  - html_section