Issues

• Create a separate script for each component of the pipeline: Data Loader

  PerkLab/Spectroscopy_TrackedTissueSensing#43 · Filter by author 16djm10 opened on Jun 7, 2023

• Feature reduction 4: Feature selection techniques using scikitlearn

  PerkLab/Spectroscopy_TrackedTissueSensing#42 · Filter by author 16djm10 opened on May 30, 2023

• Feature reduction 3: Resampling to 100 wavelengths

  PerkLab/Spectroscopy_TrackedTissueSensing#41 · Filter by author 16djm10 opened on May 30, 2023

• Feature reduction 2: Testing PCA with 100 components

  PerkLab/Spectroscopy_TrackedTissueSensing#40 · Filter by author 16djm10 opened on May 30, 2023

• Create an evaluation function for the feature reduction pipeline

  PerkLab/Spectroscopy_TrackedTissueSensing#39 · Filter by author 16djm10 opened on May 30, 2023

• Testing LDA without any feature reduction as baseline

  PerkLab/Spectroscopy_TrackedTissueSensing#38 · Filter by author 16djm10 opened on May 30, 2023

• Experiment 3: k-fold cross validation based on sampleID and sample number

  PerkLab/Spectroscopy_TrackedTissueSensing#37 · Filter by author 16djm10 opened on May 23, 2023

• Experiment 2: Train on back, test on front'

  PerkLab/Spectroscopy_TrackedTissueSensing#36 · Filter by author 16djm10 opened on May 23, 2023

• Experiment: Sweep through n_components for PCA and plot them. Determine optimal parameter

  PerkLab/Spectroscopy_TrackedTissueSensing#35 · Filter by author 16djm10 opened on May 23, 2023

• Experiment 1: Implement LDA using random split - Histopathology separation + sample separation

  PerkLab/Spectroscopy_TrackedTissueSensing#34 · Filter by author 16djm10 opened on May 23, 2023

• Create a PCA LDA pipeline

  PerkLab/Spectroscopy_TrackedTissueSensing#33 · Filter by author 16djm10 opened on May 19, 2023

• Update time plot to use shapes to differentiate between different samples

  PerkLab/Spectroscopy_TrackedTissueSensing#32 · Filter by author 16djm10 opened on May 15, 2023

• Kidney Data exploration

  PerkLab/Spectroscopy_TrackedTissueSensing#31 · Filter by author 16djm10 opened on Apr 10, 2023

• Use settings to save the previously used classifier instead of saving it in the module code

  PerkLab/Spectroscopy_TrackedTissueSensing#30 · Filter by author 16djm10 opened on Jan 18, 2023

• Add the characteristic curve of the lightsource to my preprocessing

  PerkLab/Spectroscopy_TrackedTissueSensing#29 · Filter by author 16djm10 opened on Dec 13, 2022

• Rework model generation script to work with module

  PerkLab/Spectroscopy_TrackedTissueSensing#28 · Filter by author 16djm10 opened on Nov 22, 2022

• Standard Operating Protocol

  PerkLab/Spectroscopy_TrackedTissueSensing#27 · Filter by author 16djm10 opened on Nov 15, 2022

• Add a function to initialize the scene with needle,, lists, and place them on transform if present

  PerkLab/Spectroscopy_TrackedTissueSensing#26 · Filter by author 16djm10 opened on Nov 15, 2022

• Decouple classification from the plotting function

  PerkLab/Spectroscopy_TrackedTissueSensing#25 · Filter by author 16djm10 opened on Nov 15, 2022

• Implement data collection mode

  PerkLab/Spectroscopy_TrackedTissueSensing#24 · Filter by author 16djm10 opened on Oct 20, 2022

• Go through my code. Use parameter node instead of getting nodes from the scene

  PerkLab/Spectroscopy_TrackedTissueSensing#23 · Filter by author 16djm10 opened on Oct 20, 2022

• Add a toggle button to allow for a continual scanning with x mm gap from last placed point

  PerkLab/Spectroscopy_TrackedTissueSensing#22 · Filter by author 16djm10 opened on Aug 4, 2022

• Switch enable plotting from a checkbox to a toggleable button

  PerkLab/Spectroscopy_TrackedTissueSensing#21 · Filter by author 16djm10 opened on Aug 4, 2022

• Add an image of the setup into the scene, and register it to the scene frame using the fiducial registration wizard

  PerkLab/Spectroscopy_TrackedTissueSensing#20 · Filter by author 16djm10 opened on Aug 2, 2022

• train a new model using data from the blue and white box

  PerkLab/Spectroscopy_TrackedTissueSensing#19 · Filter by author 16djm10 opened on Aug 2, 2022