Merge branch 'main' into abstractsparse

Author: gdalle

.buildkite/pipeline.yml

@@ -0,0 +1,18 @@
+env:
+  SECRET_CODECOV_TOKEN: "l7PxpMgxHEiz2l3UDDj5122Xirv5du1QFQiTf09YISC8VOz/nXeQC2yYY6iTMbccQG3xrumfWke9vtLbAc9LPH75kw3zQODuWMbz0eGSf9wtw7foqO6KAo5neMTeZJ0ZFgFMa2Q89T5SNIQsi4b5Zs7BVto6qB9Z/3QEs/BpsR25cYkY4Y6JBU6XuqZ6GRAc6BtlB4OmBEp3BBsXatx6y64zF0qbp4rocmcBQEoeQkcXtxf0dfA0KNAHpweWPrzIAMZ0aUYp6iEikxwLY5TjVFhOIcpVXUlxIdhl2qaaDF6b6WlgGXiGLpBjsLQfvlOgIlXH59Ddg0IVxboF2a37OA==;U2FsdGVkX19MveWMe1aasYZoJwaeiKO5XqwMZ/utOFj7h1CE9UX4nduBMXTyJ77tpNmCBYsQNJ/PadbX2224hQ=="
+
+steps:
+  - label: "Julia v1"
+    plugins:
+      - JuliaCI/julia#v1:
+          version: "1"
+      - JuliaCI/julia-test#v1: ~
+      - JuliaCI/julia-coverage#v1:
+          codecov: true
+    agents:
+      queue: "juliagpu"
+      cuda: "*"
+    if: build.message !~ /\[skip tests\]/
+    timeout_in_minutes: 60
+    env:
+      JULIA_SMC_TEST_GROUP: 'GPU'

.github/workflows/Benchmark.yml

@@ -16,7 +16,7 @@ jobs:
             - uses: julia-actions/setup-julia@v2
               with:
                 version: "1"
-            - uses: julia-actions/cache@v2
+            - uses: julia-actions/cache@v3
             - name: Extract Package Name from Project.toml
               id: extract-package-name
               run: |

.github/workflows/Documentation.yml

@@ -23,7 +23,7 @@ jobs:
       - uses: julia-actions/setup-julia@v2
         with:
           version: '1'
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - name: Install dependencies
         run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build and deploy

.github/workflows/Test-GPU.yml

@@ -32,7 +32,7 @@ jobs:
         if: ${{ matrix.version == '1.10' }}
         with:
           skip: LinearAlgebra, Random, SparseArrays
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1

.github/workflows/Test.yml

@@ -18,7 +18,7 @@ identifiers:
   - type: doi
     value: 10.5281/zenodo.11314275
     description: Zenodo
-repository-code: 'https://github.com/gdalle/SparseMatrixColorings.jl'
+repository-code: 'https://github.com/JuliaDiff/SparseMatrixColorings.jl'
 abstract: >-
   Coloring algorithms for sparse Jacobian and Hessian
   matrices

CITATION.cff

@@ -1,7 +1,7 @@
 name = "SparseMatrixColorings"
 uuid = "0a514795-09f3-496d-8182-132a7b665d35"
 authors = ["Guillaume Dalle", "Alexis Montoison"]
-version = "0.4.24"
+version = "0.4.25"
 
 [deps]
 ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b"

Project.toml

@@ -1,9 +1,11 @@
 # SparseMatrixColorings.jl
 
-[![Build Status](https://github.com/gdalle/SparseMatrixColorings.jl/actions/workflows/Test.yml/badge.svg?branch=main)](https://github.com/gdalle/SparseMatrixColorings.jl/actions/workflows/Test.yml?query=branch%3Amain)
-[![Stable Documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://gdalle.github.io/SparseMatrixColorings.jl/stable/)
-[![Dev Documentation](https://img.shields.io/badge/docs-dev-blue.svg)](https://gdalle.github.io/SparseMatrixColorings.jl/dev/)
-[![Coverage](https://codecov.io/gh/gdalle/SparseMatrixColorings.jl/branch/main/graph/badge.svg)](https://app.codecov.io/gh/gdalle/SparseMatrixColorings.jl)
+[![Build Status](https://github.com/juliadiff/SparseMatrixColorings.jl/actions/workflows/Test.yml/badge.svg?branch=main)](https://github.com/juliadiff/SparseMatrixColorings.jl/actions/workflows/Test.yml?query=branch%3Amain)
+[![GPU build status](https://badge.buildkite.com/7d8ed289d7bdb5a25ae48b2c778a202ce4990b7ee558cdfef8.svg?branch=main)](https://buildkite.com/julialang/sparsematrixcolorings-dot-jl)
+[![Coverage](https://codecov.io/gh/juliadiff/SparseMatrixColorings.jl/branch/main/graph/badge.svg)](https://app.codecov.io/gh/juliadiff/SparseMatrixColorings.jl)
+
+[![Stable Documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliadiff.org/SparseMatrixColorings.jl/stable/)
+[![Dev Documentation](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliadiff.org/SparseMatrixColorings.jl/dev/)
 [![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/JuliaDiff/BlueStyle)
 [![arXiv](https://img.shields.io/badge/arXiv-2505.07308-b31b1b.svg)](https://arxiv.org/abs/2505.07308)
 [![DOI](https://zenodo.org/badge/801999408.svg)](https://zenodo.org/doi/10.5281/zenodo.11314275)

README.md

@@ -21,5 +21,7 @@ makedocs(;
 )
 
 deploydocs(;
-    repo="github.com/gdalle/SparseMatrixColorings.jl", push_preview=true, devbranch="main"
+    repo="github.com/JuliaDiff/SparseMatrixColorings.jl",
+    push_preview=true,
+    devbranch="main",
 )

docs/make.jl

@@ -310,7 +310,7 @@ end
     @test_logs log !substitutable_bidirectional(A, B, [1, 0, 0, 1], [0, 1, 1]; verbose=true)
 end
 
-# See https://github.com/gdalle/SparseMatrixColorings.jl/pull/300
+# See https://github.com/JuliaDiff/SparseMatrixColorings.jl/pull/300
 @testset "Empty matrix" begin
     problem = ColoringProblem(; structure=:symmetric, partition=:column)
     algo = GreedyColoringAlgorithm(; decompression=:substitution)