From e63cf400f947f63fdee424184a548d4a9c357a67 Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Mon, 20 Jul 2026 13:04:17 -0400 Subject: [PATCH 01/13] feat: sort projects alphabetically --- package-lock.json | 3095 ++++++++++++--------- src/components/projects/CardContainer.jsx | 14 +- src/components/projects/FilterMenu.jsx | 20 + src/pages/projects/index.astro | 6 + src/stores/selectedSortStore.js | 39 + 5 files changed, 1886 insertions(+), 1288 deletions(-) create mode 100644 src/stores/selectedSortStore.js diff --git a/package-lock.json b/package-lock.json index 04bb537f..002111b3 100644 --- a/package-lock.json +++ b/package-lock.json @@ -51,36 +51,23 @@ "url": "https://github.com/sponsors/sindresorhus" } }, - "node_modules/@ampproject/remapping": { - "version": "2.3.0", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz", - "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==", - "license": 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"rollup": "^4.30.1" + "rollup": "^4.34.9", + "tinyglobby": "^0.2.13" }, "bin": { "vite": "bin/vite.js" @@ -8342,17 +8843,47 @@ } } }, + "node_modules/vite/node_modules/fdir": { + "version": "6.5.0", + "resolved": "https://registry.npmjs.org/fdir/-/fdir-6.5.0.tgz", + "integrity": "sha512-tIbYtZbucOs0BRGqPJkshJUYdL+SDH7dVM8gjy+ERp3WAUjLEFJE+02kanyHtwjWOnwrKYBiwAmM0p4kLJAnXg==", + "license": "MIT", + "engines": { + "node": ">=12.0.0" + }, + "peerDependencies": { + "picomatch": "^3 || ^4" + }, + "peerDependenciesMeta": { + "picomatch": { + "optional": true + } + } + }, + "node_modules/vite/node_modules/picomatch": { + "version": "4.0.5", + "resolved": "https://registry.npmjs.org/picomatch/-/picomatch-4.0.5.tgz", + "integrity": "sha512-RvwwcruNjI1ncT5xRakeyS9Lf8lcItv34KD+aif+VH9kduAyfYBipGh12274xtenIPZ119/R9BdTBa8gAwSh0A==", + "license": "MIT", + "engines": { + "node": ">=12" + }, + "funding": { + "url": "https://github.com/sponsors/jonschlinkert" + } + }, "node_modules/vitefu": { - "version": "1.0.6", - 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"node_modules/which-pm": { - "version": "3.0.1", - "resolved": "https://registry.npmjs.org/which-pm/-/which-pm-3.0.1.tgz", - "integrity": "sha512-v2JrMq0waAI4ju1xU5x3blsxBBMgdgZve580iYMN5frDaLGjbA24fok7wKCsya8KLVO19Ju4XDc5+zTZCJkQfg==", - "license": "MIT", - "dependencies": { - "load-yaml-file": "^0.2.0" - }, - "engines": { - "node": ">=18.12" - } - }, "node_modules/which-pm-runs": { "version": "1.1.0", "resolved": "https://registry.npmjs.org/which-pm-runs/-/which-pm-runs-1.1.0.tgz", @@ -8582,15 +9102,18 @@ "license": "ISC" }, "node_modules/yaml": { - "version": "2.5.1", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.5.1.tgz", - "integrity": "sha512-bLQOjaX/ADgQ20isPJRvF0iRUHIxVhYvr53Of7wGcWlO2jvtUlH5m87DsmulFVxRpNLOnI4tB6p/oh8D7kpn9Q==", + "version": "2.9.0", + "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.9.0.tgz", + "integrity": "sha512-2AvhNX3mb8zd6Zy7INTtSpl1F15HW6Wnqj0srWlkKLcpYl/gMIMJiyuGq2KeI2YFxUPjdlB+3Lc10seMLtL4cA==", "license": "ISC", "bin": { "yaml": "bin.mjs" }, "engines": { - "node": ">= 14" + "node": ">= 14.6" + }, + "funding": { + "url": "https://github.com/sponsors/eemeli" } }, "node_modules/yargs-parser": { @@ -8625,9 +9148,9 @@ } }, "node_modules/yocto-spinner": { - "version": "0.2.1", - "resolved": "https://registry.npmjs.org/yocto-spinner/-/yocto-spinner-0.2.1.tgz", - "integrity": "sha512-lHHxjh0bXaLgdJy3cNnVb/F9myx3CkhrvSOEVTkaUgNMXnYFa2xYPVhtGnqhh3jErY2gParBOHallCbc7NrlZQ==", + "version": "0.2.3", + "resolved": "https://registry.npmjs.org/yocto-spinner/-/yocto-spinner-0.2.3.tgz", + "integrity": "sha512-sqBChb33loEnkoXte1bLg45bEBsOP9N1kzQh5JZNKj/0rik4zAPTNSAVPj3uQAdc6slYJ0Ksc403G2XgxsJQFQ==", "license": "MIT", "dependencies": { "yoctocolors": "^2.1.1" @@ -8640,9 +9163,9 @@ } }, "node_modules/yoctocolors": { - "version": "2.1.1", - "resolved": "https://registry.npmjs.org/yoctocolors/-/yoctocolors-2.1.1.tgz", - "integrity": "sha512-GQHQqAopRhwU8Kt1DDM8NjibDXHC8eoh1erhGAJPEyveY9qqVeXvVikNKrDz69sHowPMorbPUrH/mx8c50eiBQ==", + "version": "2.1.2", + "resolved": "https://registry.npmjs.org/yoctocolors/-/yoctocolors-2.1.2.tgz", + "integrity": "sha512-CzhO+pFNo8ajLM2d2IW/R93ipy99LWjtwblvC1RsoSUMZgyLbYFr221TnSNT7GjGdYui6P459mw9JH/g/zW2ug==", "license": "MIT", "engines": { "node": ">=18" @@ -8652,21 +9175,21 @@ } }, "node_modules/zod": { - 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"zod": "^3.24.1" + "zod": "^3.25.28 || ^4" } }, "node_modules/zod-to-ts": { diff --git a/src/components/projects/CardContainer.jsx b/src/components/projects/CardContainer.jsx index 2c4f86dd..cc61f6ac 100644 --- a/src/components/projects/CardContainer.jsx +++ b/src/components/projects/CardContainer.jsx @@ -2,6 +2,7 @@ import { useState, useEffect } from "react"; import { useStore } from "@nanostores/react"; import { selectedTags } from "@stores/selectedTagsStore"; import { selectedProjectType } from "@stores/selectedProjectTypeStore"; +import { selectedSort } from "@stores/selectedSortStore"; import { getTagValues } from "@utils/getTags"; import { $projectData } from "@stores/projectSearchResultsStore"; import { $ecosystemData } from "@stores/ecosystemSearchResultsStore"; @@ -17,6 +18,7 @@ export default function CardContainer({ cardContent, contentType, maxLength, + sortedTitles, }) { const [visible, setVisible] = useState("relative"); const [order, setOrder] = useState(0); @@ -25,6 +27,7 @@ export default function CardContainer({ const ecosystemData = useStore($ecosystemData); const $selectedTags = useStore(selectedTags); const $selectedProjectType = useStore(selectedProjectType); + const $selectedSort = useStore(selectedSort); const tagsArray = getTagValues(tagsObj); let contentData = null; @@ -53,8 +56,14 @@ export default function CardContainer({ useEffect(() => { if (typeof window !== "undefined") { const matchingIndex = findMatchingIndex(contentData, title); - const itemOrder = - urlQuery === "" ? Math.floor(Math.random() * maxLength) : matchingIndex; + let itemOrder; + if (urlQuery !== "") { + itemOrder = matchingIndex; + } else if ($selectedSort === "alphabetical" && sortedTitles) { + itemOrder = sortedTitles.indexOf(title); + } else { + itemOrder = Math.floor(Math.random() * maxLength); + } setOrder(itemOrder); const isSearchMatch = @@ -83,6 +92,7 @@ export default function CardContainer({ contentData, $selectedProjectType, $selectedTags, + $selectedSort, contentType, projectType, ]); diff --git a/src/components/projects/FilterMenu.jsx b/src/components/projects/FilterMenu.jsx index 40ec8ce5..48fcaf8d 100644 --- a/src/components/projects/FilterMenu.jsx +++ b/src/components/projects/FilterMenu.jsx @@ -6,12 +6,14 @@ import { toggleVisibility, } from "@stores/isFilterMenuVisibleStore.js"; import { selectedTags, handleTagSelection } from "@stores/selectedTagsStore.js"; +import { selectedSort, handleSortSelection } from "@stores/selectedSortStore.js"; import { getBackgroundColor } from "@utils/getTagBgColor"; const OMIT_TAG_CATEGORIES = ["software ecosystem", "supported file types"]; export default function FilterMenu({ uniqueTags }) { const $selectedTags = useStore(selectedTags); + const $selectedSort = useStore(selectedSort); //used to manage state for the close ("x") button on the small screen filter menu const $isFilterMenuVisible = useStore(isFilterMenuVisible); @@ -118,6 +120,24 @@ export default function FilterMenu({ uniqueTags }) { ) )} + +
+

Sort by

+ +
diff --git a/src/pages/projects/index.astro b/src/pages/projects/index.astro index db0d5c88..96e771fe 100644 --- a/src/pages/projects/index.astro +++ b/src/pages/projects/index.astro @@ -25,6 +25,11 @@ const allProjects = await getCollection("projects"); // uniqueTags is an object where keys = unique tag categories, values = unique tags within a category, both across allProjects. All lowercase. // used to populate the filter menu const uniqueTags = getTagKeysAndValues(allProjects); + +// all project titles sorted alphabetically; used to position cards when the "Alphabetical" sort is selected +const sortedTitles = allProjects + .map((content) => content.data.title) + .sort((a, b) => a.localeCompare(b)); --- @@ -73,6 +78,7 @@ const uniqueTags = getTagKeysAndValues(allProjects); projectType={content.data["project type"][0]} contentType="projects" maxLength={allProjects.length} + sortedTitles={sortedTitles} client:only="react" > {content.data["image file"] ? ( diff --git a/src/stores/selectedSortStore.js b/src/stores/selectedSortStore.js new file mode 100644 index 00000000..7fe04c97 --- /dev/null +++ b/src/stores/selectedSortStore.js @@ -0,0 +1,39 @@ +import { atom, onMount } from "nanostores"; + +export const selectedSort = atom(""); + +onMount(selectedSort, () => { + const currentSort = selectedSort.get(); + let urlSort = ""; + if (typeof window !== "undefined") { + const searchParams = new URLSearchParams(window.location.search); + urlSort = searchParams.get("sort") || ""; + } + if (currentSort === "" && urlSort !== "") { + selectedSort.set(urlSort); + } +}); + +function updateSortSearchParams(updatedSort) { + // update URL search params + if (typeof window !== "undefined") { + const currentUrl = new URL(window.location); + const searchParams = new URLSearchParams(currentUrl.search); + + if (updatedSort) { + searchParams.set("sort", updatedSort); + } else { + searchParams.delete("sort"); + } + + // Use history.pushState to update the URL without reloading the page + window.history.pushState({}, "", `${currentUrl.pathname}?${searchParams}`); + } +} + +export function handleSortSelection(sort) { + const prevSort = selectedSort.get(); + const updatedSort = prevSort === sort ? "" : sort; + selectedSort.set(updatedSort); + updateSortSearchParams(updatedSort); +} From bfd40f06291f2d75dc90f269a160fbfa9be52b37 Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Mon, 3 Aug 2026 16:00:13 -0400 Subject: [PATCH 02/13] feat: add option to sort by last update --- .github/actions/package-lock.json | 105 +++++++++++- .github/actions/package.json | 1 + .github/actions/repo-dates.json | 37 +++++ .github/actions/update-project-dates.js | 157 ++++++++++++++++++ .github/workflows/update-project-dates.yml | 48 ++++++ src/components/projects/CardContainer.jsx | 6 +- src/components/projects/FilterMenu.jsx | 28 ++++ src/content.config.ts | 1 + src/content/projects/_project-template.md | 1 + ...atform-for-single-molecule-localization.md | 1 + src/content/projects/bigstitcher-spark.md | 1 + src/content/projects/bigstitcher.md | 1 + src/content/projects/bigstream.md | 1 + src/content/projects/bigwarp.md | 1 + src/content/projects/catena.md | 1 + src/content/projects/cellpose.md | 1 + src/content/projects/dacapo.md | 1 + src/content/projects/dvid.md | 1 + src/content/projects/easi-fish-pipeline.md | 1 + src/content/projects/entrypoints.md | 1 + src/content/projects/facemap.md | 1 + src/content/projects/geff.md | 1 + src/content/projects/hortacloud.md | 1 + src/content/projects/kilosort.md | 1 + src/content/projects/maru.md | 1 + src/content/projects/motile-tracker.md | 1 + src/content/projects/neuronbridge.md | 1 + src/content/projects/neuvid.md | 1 + src/content/projects/nidaq.md | 1 + src/content/projects/ossi-website.md | 1 + src/content/projects/paintera.md | 1 + src/content/projects/phase-diversity.md | 1 + src/content/projects/rastermap.md | 1 + src/content/projects/rs-fish.md | 1 + src/content/projects/songexplorer.md | 1 + src/content/projects/stim.md | 1 + src/content/projects/stitching-spark.md | 1 + src/content/projects/suite2p.md | 1 + src/content/projects/traccuracy.md | 1 + src/content/projects/trainspikingnet.md | 1 + .../projects/video-annotation-library.md | 1 + src/content/projects/vvd-viewer.md | 1 + src/content/projects/x2s3.md | 1 + src/content/projects/zarrcade.md | 1 + src/pages/projects/index.astro | 20 ++- 45 files changed, 431 insertions(+), 8 deletions(-) create mode 100644 .github/actions/repo-dates.json create mode 100644 .github/actions/update-project-dates.js create mode 100644 .github/workflows/update-project-dates.yml diff --git a/.github/actions/package-lock.json b/.github/actions/package-lock.json index e85c8d67..4929f3bc 100644 --- a/.github/actions/package-lock.json +++ b/.github/actions/package-lock.json @@ -9,18 +9,115 @@ "version": "1.0.0", "license": "BSD-3 Clause", "dependencies": { + "@octokit/graphql": "^8.1.1", "yaml": "^2.4.1" } }, + "node_modules/@octokit/endpoint": { + "version": "10.1.4", + "resolved": "https://registry.npmjs.org/@octokit/endpoint/-/endpoint-10.1.4.tgz", + "integrity": "sha512-OlYOlZIsfEVZm5HCSR8aSg02T2lbUWOsCQoPKfTXJwDzcHQBrVBGdGXb89dv2Kw2ToZaRtudp8O3ZIYoaOjKlA==", + "license": "MIT", + "dependencies": { + "@octokit/types": "^14.0.0", + "universal-user-agent": "^7.0.2" + }, + "engines": { + "node": ">= 18" + } + }, + "node_modules/@octokit/graphql": { + "version": "8.2.2", + "resolved": "https://registry.npmjs.org/@octokit/graphql/-/graphql-8.2.2.tgz", + "integrity": "sha512-Yi8hcoqsrXGdt0yObxbebHXFOiUA+2v3n53epuOg1QUgOB6c4XzvisBNVXJSl8RYA5KrDuSL2yq9Qmqe5N0ryA==", + "license": "MIT", + "dependencies": { + "@octokit/request": "^9.2.3", + "@octokit/types": "^14.0.0", + "universal-user-agent": "^7.0.0" + }, + "engines": { + "node": ">= 18" + } + }, + "node_modules/@octokit/openapi-types": { + "version": "25.1.0", + "resolved": "https://registry.npmjs.org/@octokit/openapi-types/-/openapi-types-25.1.0.tgz", + "integrity": "sha512-idsIggNXUKkk0+BExUn1dQ92sfysJrje03Q0bv0e+KPLrvyqZF8MnBpFz8UNfYDwB3Ie7Z0TByjWfzxt7vseaA==", + "license": "MIT" + }, + "node_modules/@octokit/request": { + "version": "9.2.4", + "resolved": "https://registry.npmjs.org/@octokit/request/-/request-9.2.4.tgz", + "integrity": "sha512-q8ybdytBmxa6KogWlNa818r0k1wlqzNC+yNkcQDECHvQo8Vmstrg18JwqJHdJdUiHD2sjlwBgSm9kHkOKe2iyA==", + "license": "MIT", + "dependencies": { + "@octokit/endpoint": "^10.1.4", + "@octokit/request-error": "^6.1.8", + "@octokit/types": "^14.0.0", + "fast-content-type-parse": "^2.0.0", + "universal-user-agent": "^7.0.2" + }, + "engines": { + "node": ">= 18" + } + }, + "node_modules/@octokit/request-error": { + "version": "6.1.8", + "resolved": "https://registry.npmjs.org/@octokit/request-error/-/request-error-6.1.8.tgz", + "integrity": "sha512-WEi/R0Jmq+IJKydWlKDmryPcmdYSVjL3ekaiEL1L9eo1sUnqMJ+grqmC9cjk7CA7+b2/T397tO5d8YLOH3qYpQ==", + "license": "MIT", + "dependencies": { + "@octokit/types": "^14.0.0" + }, + "engines": { + "node": ">= 18" + } + }, + "node_modules/@octokit/types": { + "version": "14.1.0", + "resolved": "https://registry.npmjs.org/@octokit/types/-/types-14.1.0.tgz", + "integrity": "sha512-1y6DgTy8Jomcpu33N+p5w58l6xyt55Ar2I91RPiIA0xCJBXyUAhXCcmZaDWSANiha7R9a6qJJ2CRomGPZ6f46g==", + "license": "MIT", + "dependencies": { + "@octokit/openapi-types": "^25.1.0" + } + }, + "node_modules/fast-content-type-parse": { + "version": "2.0.1", + "resolved": "https://registry.npmjs.org/fast-content-type-parse/-/fast-content-type-parse-2.0.1.tgz", + "integrity": "sha512-nGqtvLrj5w0naR6tDPfB4cUmYCqouzyQiz6C5y/LtcDllJdrcc6WaWW6iXyIIOErTa/XRybj28aasdn4LkVk6Q==", + "funding": [ + { + "type": "github", + "url": "https://github.com/sponsors/fastify" + }, + { + "type": "opencollective", + "url": "https://opencollective.com/fastify" + } + ], + "license": "MIT" + }, + "node_modules/universal-user-agent": { + "version": "7.0.3", + "resolved": "https://registry.npmjs.org/universal-user-agent/-/universal-user-agent-7.0.3.tgz", + "integrity": "sha512-TmnEAEAsBJVZM/AADELsK76llnwcf9vMKuPz8JflO1frO8Lchitr0fNaN9d+Ap0BjKtqWqd/J17qeDnXh8CL2A==", + "license": "ISC" + }, "node_modules/yaml": { - "version": "2.4.1", - "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.4.1.tgz", - "integrity": "sha512-pIXzoImaqmfOrL7teGUBt/T7ZDnyeGBWyXQBvOVhLkWLN37GXv8NMLK406UY6dS51JfcQHsmcW5cJ441bHg6Lg==", + "version": "2.9.0", + "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.9.0.tgz", + "integrity": "sha512-2AvhNX3mb8zd6Zy7INTtSpl1F15HW6Wnqj0srWlkKLcpYl/gMIMJiyuGq2KeI2YFxUPjdlB+3Lc10seMLtL4cA==", + "license": "ISC", "bin": { "yaml": "bin.mjs" }, "engines": { - "node": ">= 14" + "node": ">= 14.6" + }, + "funding": { + "url": "https://github.com/sponsors/eemeli" } } } diff --git a/.github/actions/package.json b/.github/actions/package.json index 807cb790..b37086a2 100644 --- a/.github/actions/package.json +++ b/.github/actions/package.json @@ -10,6 +10,7 @@ "author": "allison-truhlar", "license": "BSD-3 Clause", "dependencies": { + "@octokit/graphql": "^8.1.1", "yaml": "^2.4.1" } } diff --git a/.github/actions/repo-dates.json b/.github/actions/repo-dates.json new file mode 100644 index 00000000..3bd20d43 --- /dev/null +++ b/.github/actions/repo-dates.json @@ -0,0 +1,37 @@ +{ + "turagalab/decode": "2023-06-22T11:37:19Z", + "janeliascicomp/bigstitcher-spark": "2026-08-01T20:13:27Z", + "preibischlab/bigstitcher": "2026-07-03T10:03:04Z", + "janeliascicomp/bigstream": "2026-07-30T23:38:10Z", + "saalfeldlab/bigwarp": "2026-07-29T18:47:26Z", + "mohinta2892/catena": "2026-05-18T12:52:09Z", + "mouseland/cellpose": "2026-06-14T13:21:03Z", + "janelia-cellmap/dacapo": "2026-04-24T15:25:37Z", + "janelia-flyem/dvid": "2026-07-25T01:05:08Z", + "janeliascicomp/multifish": "2026-04-15T13:08:03Z", + "janeliascicomp/entrypoints": "2021-01-03T20:07:50Z", + "mouseland/facemap": "2026-01-26T23:17:05Z", + "live-image-tracking-tools/geff": "2026-07-29T17:04:02Z", + "janeliascicomp/hortacloud": "2026-07-15T20:01:40Z", + "mouseland/kilosort": "2026-04-27T20:33:25Z", + "janeliascicomp/maru": "2021-08-31T21:45:55Z", + "funkelab/motile_tracker": "2026-08-03T15:11:00Z", + "janeliascicomp/neuronbridge": "2026-07-27T21:30:06Z", + "connectome-neuprint/neuvid": "2026-03-22T12:45:55Z", + "janeliascicomp/nidaq.jl": "2026-02-08T14:42:51Z", + "janeliascicomp/ossi-website": "2026-03-25T23:06:56Z", + "saalfeldlab/paintera": "2026-07-30T19:56:27Z", + "ceej640/phasediversity": "2025-02-25T19:27:04Z", + "mouseland/rastermap": "2025-04-04T17:38:27Z", + "preibischlab/rs-fish": "2025-02-04T15:48:48Z", + "janeliascicomp/songexplorer": "2026-04-10T18:05:33Z", + "preibischlab/stim": "2025-05-27T15:11:27Z", + "saalfeldlab/stitching-spark": "2023-10-17T14:27:21Z", + "mouseland/suite2p": "2026-07-01T15:11:01Z", + "live-image-tracking-tools/traccuracy": "2026-07-27T04:04:10Z", + "spikingnetwork/trainspikingnet.jl": "2024-08-29T16:11:49Z", + "janeliascicomp/videoannotation": "2026-07-28T15:49:31Z", + "janeliascicomp/vvdviewer": "2026-07-15T23:55:56Z", + "janeliascicomp/x2s3": "2026-07-30T12:19:49Z", + "janeliascicomp/zarrcade": "2026-07-07T00:58:57Z" +} diff --git a/.github/actions/update-project-dates.js b/.github/actions/update-project-dates.js new file mode 100644 index 00000000..4d7d14c6 --- /dev/null +++ b/.github/actions/update-project-dates.js @@ -0,0 +1,157 @@ +import { readFileSync, writeFileSync, readdirSync } from "fs"; +import { fileURLToPath } from "url"; +import { dirname, join } from "path"; +import yaml from "yaml"; +import { graphql } from "@octokit/graphql"; + +const __dirname = dirname(fileURLToPath(import.meta.url)); +const PROJECTS_DIR = join(__dirname, "..", "..", "src", "content", "projects"); +const REPO_DATES_PATH = join(__dirname, "repo-dates.json"); + +const authToken = process.env.GITHUB_TOKEN || process.env.OSSI_SITE_TOKEN; +if (!authToken) { + console.error( + "Missing GITHUB_TOKEN (or OSSI_SITE_TOKEN) environment variable." + ); + process.exit(1); +} + +const graphqlWithAuth = graphql.defaults({ + headers: { authorization: `token ${authToken}` }, +}); + +// extracts the frontmatter block, split into the pieces needed to splice a +// single field back in without reserializing (and reformatting) the rest of it +function extractFrontMatter(content) { + const match = content.match(/^(---\n)([\s\S]+?)(\n---)/); + return match + ? { full: match[0], prefix: match[1], body: match[2], suffix: match[3] } + : null; +} + +function parseOwnerRepo(githubUrl) { + let url; + try { + url = new URL(githubUrl); + } catch { + return null; + } + const parts = url.pathname.split("/").filter((part) => part !== ""); + if (parts.length < 2) return null; + return { owner: parts[0], repo: parts[1].replace(/\.git$/, "") }; +} + +function upsertField(frontMatterBody, key, value) { + const lineRegex = new RegExp(`^${key}:.*$`, "m"); + const newLine = `${key}: ${value}`; + if (lineRegex.test(frontMatterBody)) { + return frontMatterBody.replace(lineRegex, newLine); + } + const githubLinkRegex = /^(github link:.*)$/m; + if (githubLinkRegex.test(frontMatterBody)) { + return frontMatterBody.replace(githubLinkRegex, `$1\n${newLine}`); + } + return `${frontMatterBody}\n${newLine}`; +} + +// 1. gather project files and the owner/repo their "github link" points to +const projectFiles = readdirSync(PROJECTS_DIR).filter( + (file) => file.endsWith(".md") && !file.startsWith("_") +); + +const projectRepos = []; +for (const file of projectFiles) { + const filePath = join(PROJECTS_DIR, file); + const content = readFileSync(filePath, "utf8"); + const frontMatter = extractFrontMatter(content); + if (!frontMatter) { + console.warn(`Skipping ${file}: no frontmatter found.`); + continue; + } + + const parsed = yaml.parse(frontMatter.body); + const githubUrl = parsed["github link"]; + const ownerRepo = githubUrl ? parseOwnerRepo(githubUrl) : null; + if (!ownerRepo) { + console.warn( + `Skipping ${file}: could not parse "github link" (${githubUrl}).` + ); + continue; + } + + projectRepos.push({ file, filePath, content, frontMatter, ...ownerRepo }); +} + +// 2. batch-fetch pushedAt for every unique repo in a single GraphQL call +const repoKey = (owner, repo) => `${owner}/${repo}`.toLowerCase(); +const uniqueRepos = [ + ...new Map( + projectRepos.map((p) => [repoKey(p.owner, p.repo), p]) + ).values(), +]; + +const queryParts = []; +const variableDefs = []; +const variables = {}; +uniqueRepos.forEach((p, i) => { + queryParts.push( + `r${i}: repository(owner: $owner${i}, name: $name${i}) { nameWithOwner pushedAt }` + ); + variableDefs.push(`$owner${i}: String!`, `$name${i}: String!`); + variables[`owner${i}`] = p.owner; + variables[`name${i}`] = p.repo; +}); + +const query = `query(${variableDefs.join(", ")}) {\n${queryParts.join( + "\n" +)}\n}`; + +let result; +try { + result = await graphqlWithAuth(query, variables); +} catch (error) { + console.error("GraphQL query failed:", error.message); + process.exit(1); +} + +// 3. regenerate repo-dates.json wholesale: repo (owner/name, lowercased) -> pushedAt +const repoDates = {}; +uniqueRepos.forEach((p, i) => { + const repoResult = result[`r${i}`]; + if (repoResult && repoResult.pushedAt) { + repoDates[repoKey(p.owner, p.repo)] = repoResult.pushedAt; + } else { + console.warn( + `No pushedAt found for ${p.owner}/${p.repo} (referenced by ${p.file})` + ); + } +}); + +writeFileSync(REPO_DATES_PATH, JSON.stringify(repoDates, null, 2) + "\n"); +console.log( + `Wrote ${Object.keys(repoDates).length} repo dates to ${REPO_DATES_PATH}` +); + +// 4. splice the resulting update_date into each project's frontmatter +let updatedCount = 0; +for (const project of projectRepos) { + const pushedAt = repoDates[repoKey(project.owner, project.repo)]; + if (!pushedAt) continue; + + const updateDate = pushedAt.slice(0, 10); // YYYY-MM-DD + const newBody = upsertField( + project.frontMatter.body, + "update_date", + updateDate + ); + if (newBody === project.frontMatter.body) continue; + + const newContent = project.content.replace( + project.frontMatter.full, + `${project.frontMatter.prefix}${newBody}${project.frontMatter.suffix}` + ); + writeFileSync(project.filePath, newContent); + updatedCount++; +} + +console.log(`Updated update_date in ${updatedCount} project file(s).`); diff --git a/.github/workflows/update-project-dates.yml b/.github/workflows/update-project-dates.yml new file mode 100644 index 00000000..5c78c435 --- /dev/null +++ b/.github/workflows/update-project-dates.yml @@ -0,0 +1,48 @@ +name: Update project last-updated dates + +# Refreshes the update_date frontmatter field on every project .md file from +# each project's GitHub repository pushedAt timestamp, so the site's +# "Last updated" sort stays current without manual upkeep. +on: + schedule: + - cron: "0 6 * * 1" # every Monday at 06:00 UTC + workflow_dispatch: + +permissions: + contents: write + +jobs: + update-dates: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: Setup node + uses: actions/setup-node@v4 + with: + node-version: 20 + cache: "npm" + cache-dependency-path: .github/actions/package-lock.json + + - name: Install npm dependencies + run: npm ci + working-directory: .github/actions + + - name: Fetch and update project dates + run: node update-project-dates.js + working-directory: .github/actions + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + + - name: Commit changes + run: | + git config user.name "github-actions[bot]" + git config user.email "github-actions[bot]@users.noreply.github.com" + git add src/content/projects .github/actions/repo-dates.json + if git diff --cached --quiet; then + echo "No changes to commit." + else + git commit -m "chore: update project last-updated dates" + git push + fi diff --git a/src/components/projects/CardContainer.jsx b/src/components/projects/CardContainer.jsx index cc61f6ac..f027127b 100644 --- a/src/components/projects/CardContainer.jsx +++ b/src/components/projects/CardContainer.jsx @@ -18,7 +18,7 @@ export default function CardContainer({ cardContent, contentType, maxLength, - sortedTitles, + sortedTitlesMap, }) { const [visible, setVisible] = useState("relative"); const [order, setOrder] = useState(0); @@ -59,8 +59,8 @@ export default function CardContainer({ let itemOrder; if (urlQuery !== "") { itemOrder = matchingIndex; - } else if ($selectedSort === "alphabetical" && sortedTitles) { - itemOrder = sortedTitles.indexOf(title); + } else if (sortedTitlesMap && sortedTitlesMap[$selectedSort]) { + itemOrder = sortedTitlesMap[$selectedSort].indexOf(title); } else { itemOrder = Math.floor(Math.random() * maxLength); } diff --git a/src/components/projects/FilterMenu.jsx b/src/components/projects/FilterMenu.jsx index 48fcaf8d..52b8b9df 100644 --- a/src/components/projects/FilterMenu.jsx +++ b/src/components/projects/FilterMenu.jsx @@ -136,6 +136,34 @@ export default function FilterMenu({ uniqueTags }) { Alphabetical (A–Z)
+
  • handleSortSelection("updated-newest")} + > +
    + Last updated (newest first) +
    +
    • +
  • handleSortSelection("updated-oldest")} + > +
    + Last updated (oldest first) +
    +
    • diff --git a/src/content.config.ts b/src/content.config.ts index 9ef08ec9..97efee71 100644 --- a/src/content.config.ts +++ b/src/content.config.ts @@ -12,6 +12,7 @@ const projectsCollection = defineCollection({ "OSSI project status": z.array(z.string()).optional(), "OSSI proposal link": z.string().optional(), "github link": z.string(), + update_date: z.coerce.date().optional(), "documentation link": z.string(), "installation instructions link": z.string().optional(), "how to cite text": z.union([z.string(), z.undefined(), z.null()]), diff --git a/src/content/projects/_project-template.md b/src/content/projects/_project-template.md index 70dcfe50..852fe8f7 100644 --- a/src/content/projects/_project-template.md +++ b/src/content/projects/_project-template.md @@ -8,6 +8,7 @@ project type: [OSSI - current, OSSI - alumni, Other] OSSI project status: [Proposed, Accepted, Active Development, Maintenance] OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal. github link: Required. Link to GitHub repository +#update_date - Do not set this manually. It is automatically populated by a scheduled GitHub Action from the repository's most recent push date, and used to power the "Last updated" sort option. documentation link: Required. Link to documentation - can be the same as the GitHub repo if the README is the documentation installation instructions link: Required. Link to installation instructions - can be the same as the GitHub repo preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." diff --git a/src/content/projects/an-open-source-platform-for-single-molecule-localization.md b/src/content/projects/an-open-source-platform-for-single-molecule-localization.md index bbbc8950..d8882d72 100644 --- a/src/content/projects/an-open-source-platform-for-single-molecule-localization.md +++ b/src/content/projects/an-open-source-platform-for-single-molecule-localization.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Accepted] OSSI proposal link: ../../proposals/single_molecule_localization.pdf github link: https://github.com/TuragaLab/DECODE +update_date: 2023-06-22 documentation link: https://decode.readthedocs.io/ installation instructions link: https://github.com/TuragaLab/DECODE?tab=readme-ov-file#local-installation how to cite link: https://doi.org/10.1038/s41592-021-01236-x diff --git a/src/content/projects/bigstitcher-spark.md b/src/content/projects/bigstitcher-spark.md index 3ab391ca..2987dae5 100644 --- a/src/content/projects/bigstitcher-spark.md +++ b/src/content/projects/bigstitcher-spark.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/petascale_lightsheet.pdf github link: https://github.com/JaneliaSciComp/BigStitcher-Spark +update_date: 2026-08-01 documentation link: https://github.com/JaneliaSciComp/BigStitcher-Spark?tab=readme-ov-file#readme installation instructions link: https://github.com/JaneliaSciComp/BigStitcher-Spark/?tab=readme-ov-file#install preferred contact method: https://github.com/JaneliaSciComp/BigStitcher-Spark/issues diff --git a/src/content/projects/bigstitcher.md b/src/content/projects/bigstitcher.md index f6469cd8..3a2469fc 100644 --- a/src/content/projects/bigstitcher.md +++ b/src/content/projects/bigstitcher.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/petascale_lightsheet.pdf github link: https://github.com/preibischlab/bigstitcher/ +update_date: 2026-07-03 documentation link: https://imagej.net/plugins/bigstitcher/ installation instructions link: https://imagej.net/plugins/bigstitcher/#download how to cite link: https://doi.org/10.1038/s41592-019-0501-0 diff --git a/src/content/projects/bigstream.md b/src/content/projects/bigstream.md index 81be697a..25303624 100644 --- a/src/content/projects/bigstream.md +++ b/src/content/projects/bigstream.md @@ -6,6 +6,7 @@ preferred contact method: mailto:fleishmang@janelia.hhmi.org project type: [Other] OSSI proposal link: "" github link: https://github.com/JaneliaSciComp/bigstream +update_date: 2026-07-30 documentation link: https://github.com/JaneliaSciComp/bigstream installation instructions link: https://github.com/JaneliaSciComp/bigstream how to cite text: "Wang Y, Eddison M, Fleishman G, Weigert M, Xu S, Wang T, Rokicki K, Goina C, Henry FE, Lemire AL, Schmidt U, Yang H, Svoboda K, Myers EW, Saalfeld S, Korff W, Sternson SM, Tillberg PW. EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization. Cell. 2021 Dec 22;184(26):6361-6377.e24. doi: 10.1016/j.cell.2021.11.024. Epub 2021 Dec 6. PMID: 34875226." diff --git a/src/content/projects/bigwarp.md b/src/content/projects/bigwarp.md index 4ff29cad..4711903c 100644 --- a/src/content/projects/bigwarp.md +++ b/src/content/projects/bigwarp.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Accepted] OSSI proposal link: ../../proposals/bigwarp.pdf github link: https://github.com/saalfeldlab/bigwarp +update_date: 2026-07-29 documentation link: https://imagej.net/plugins/bigwarp installation instructions link: https://imagej.net/plugins/bigwarp#installation how to cite link: https://doi.org/10.1109/ISBI.2016.7493463 diff --git a/src/content/projects/catena.md b/src/content/projects/catena.md index 4735c3fd..4d757052 100644 --- a/src/content/projects/catena.md +++ b/src/content/projects/catena.md @@ -6,6 +6,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/catena.pdf github link: https://github.com/Mohinta2892/catena +update_date: 2026-05-18 documentation link: https://github.com/Mohinta2892/catena installation instructions link: https://github.com/Mohinta2892/catena preferred contact method: mailto:sm2667@cam.ac.uk diff --git a/src/content/projects/cellpose.md b/src/content/projects/cellpose.md index e12442c8..78e95e64 100644 --- a/src/content/projects/cellpose.md +++ b/src/content/projects/cellpose.md @@ -6,6 +6,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/suite2p_and_cellpose.pdf github link: https://github.com/MouseLand/cellpose +update_date: 2026-06-14 documentation link: https://cellpose.readthedocs.io/en/latest/ installation instructions link: https://github.com/MouseLand/cellpose?tab=readme-ov-file#installation how to cite link: https://doi.org/10.1038/s41592-020-01018-x diff --git a/src/content/projects/dacapo.md b/src/content/projects/dacapo.md index 0f320f73..6b4cb50a 100644 --- a/src/content/projects/dacapo.md +++ b/src/content/projects/dacapo.md @@ -6,6 +6,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/dacapo.pdf github link: https://github.com/janelia-cellmap/dacapo +update_date: 2026-04-24 documentation link: https://janelia-cellmap.github.io/dacapo/ installation instructions link: https://janelia-cellmap.github.io/dacapo/install.html preferred contact method: mailto:rhoadesj@janelia.hhmi.org diff --git a/src/content/projects/dvid.md b/src/content/projects/dvid.md index 772bd3bf..ef24817e 100644 --- a/src/content/projects/dvid.md +++ b/src/content/projects/dvid.md @@ -4,6 +4,7 @@ tagline: A dataservice for branched versioning of a variety of data types includ maintainer: Bill Katz project type: [Other] github link: https://github.com/janelia-flyem/dvid +update_date: 2026-07-25 documentation link: https://github.com/janelia-flyem/dvid/blob/master/README.md installation instructions link: https://github.com/janelia-flyem/dvid/blob/master/README.md#installation how to cite link: "https://doi.org/10.3389/fncir.2019.00005" diff --git a/src/content/projects/easi-fish-pipeline.md b/src/content/projects/easi-fish-pipeline.md index 12bf51fd..d86da330 100644 --- a/src/content/projects/easi-fish-pipeline.md +++ b/src/content/projects/easi-fish-pipeline.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/easifish_pipeline.pdf github link: https://github.com/JaneliaSciComp/multifish +update_date: 2026-04-15 documentation link: https://janeliascicomp.github.io/multifish/ installation instructions link: https://janeliascicomp.github.io/multifish/QuickStart.html how to cite link: https://doi.org/10.1016/j.cell.2021.11.024 diff --git a/src/content/projects/entrypoints.md b/src/content/projects/entrypoints.md index 5038400e..b57dfdc0 100644 --- a/src/content/projects/entrypoints.md +++ b/src/content/projects/entrypoints.md @@ -5,6 +5,7 @@ maintainer: Konrad Rokicki preferred contact method: https://github.com/JaneliaSciComp/entrypoints/issues project type: [Other] github link: https://github.com/JaneliaSciComp/entrypoints +update_date: 2021-01-03 documentation link: https://github.com/JaneliaSciComp/entrypoints installation instructions link: https://github.com/JaneliaSciComp/entrypoints?tab=readme-ov-file#installation how to cite link: https://github.com/JaneliaSciComp/entrypoints diff --git a/src/content/projects/facemap.md b/src/content/projects/facemap.md index c7f58fa1..1f209a67 100644 --- a/src/content/projects/facemap.md +++ b/src/content/projects/facemap.md @@ -5,6 +5,7 @@ maintainer: Carsen Stringer #project type - Required. Pick one of the three options - delete the other two. project type: [Other] github link: https://github.com/MouseLand/facemap +update_date: 2026-01-26 documentation link: https://facemap.readthedocs.io/en/latest/index.html installation instructions link: https://facemap.readthedocs.io/en/latest/installation.html how to cite text: "Syeda, A., Zhong, L., Tung, R., Long, W., Pachitariu, M.*, & Stringer, C.* (2024). Facemap: a framework for modeling neural activity based on orofacial tracking. Nature Neuroscience, 27(1), 187-195." diff --git a/src/content/projects/geff.md b/src/content/projects/geff.md index 6dbb73c9..5f360d8e 100644 --- a/src/content/projects/geff.md +++ b/src/content/projects/geff.md @@ -8,6 +8,7 @@ project type: [Other] # OSSI project status: [Proposed, Accepted, Active Development, Maintenance] # OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal. github link: https://github.com/live-image-tracking-tools/geff +update_date: 2026-07-29 documentation link: https://liveimagetrackingtools.org/geff/latest/ installation instructions link: https://liveimagetrackingtools.org/geff/latest/#installation # preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." diff --git a/src/content/projects/hortacloud.md b/src/content/projects/hortacloud.md index 1722edc1..ac3b21c0 100644 --- a/src/content/projects/hortacloud.md +++ b/src/content/projects/hortacloud.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Maintenance] OSSI proposal link: ../../proposals/hortacloud.pdf github link: https://github.com/JaneliaSciComp/hortacloud +update_date: 2026-07-15 documentation link: https://hortacloud.janelia.org/docs/ installation instructions link: https://hortacloud.janelia.org/docs/administration/aws/ how to cite link: https://github.com/JaneliaSciComp/hortacloud diff --git a/src/content/projects/kilosort.md b/src/content/projects/kilosort.md index 72d4fff7..aa6051de 100644 --- a/src/content/projects/kilosort.md +++ b/src/content/projects/kilosort.md @@ -6,6 +6,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/kilosort.pdf github link: https://github.com/MouseLand/Kilosort +update_date: 2026-04-27 documentation link: https://kilosort.readthedocs.io/en/latest/ installation instructions link: https://github.com/MouseLand/Kilosort?tab=readme-ov-file#installation how to cite link: https://doi.org/10.1101/061481 diff --git a/src/content/projects/maru.md b/src/content/projects/maru.md index d1d0c9b2..75d8f141 100644 --- a/src/content/projects/maru.md +++ b/src/content/projects/maru.md @@ -5,6 +5,7 @@ maintainer: Konrad Rokicki preferred contact method: https://github.com/JaneliaSciComp/maru/issues project type: [Other] github link: https://github.com/JaneliaSciComp/maru +update_date: 2021-08-31 documentation link: https://github.com/JaneliaSciComp/maru installation instructions link: https://github.com/JaneliaSciComp/maru?tab=readme-ov-file#get-maru how to cite link: https://github.com/JaneliaSciComp/maru diff --git a/src/content/projects/motile-tracker.md b/src/content/projects/motile-tracker.md index 84bba597..1b9319b3 100644 --- a/src/content/projects/motile-tracker.md +++ b/src/content/projects/motile-tracker.md @@ -8,6 +8,7 @@ project type: [Other] # OSSI project status: [Proposed, Accepted, Active Development, Maintenance] # OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal. github link: https://github.com/funkelab/motile_tracker +update_date: 2026-08-03 documentation link: https://funkelab.github.io/motile_tracker/ installation instructions link: https://funkelab.github.io/motile_tracker/getting_started.html#installation # preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." diff --git a/src/content/projects/neuronbridge.md b/src/content/projects/neuronbridge.md index e38d8423..2f31bd28 100644 --- a/src/content/projects/neuronbridge.md +++ b/src/content/projects/neuronbridge.md @@ -5,6 +5,7 @@ maintainer: Konrad Rokicki preferred contact method: mailto:neuronbridge@janelia.hhmi.org project type: [Other] github link: https://github.com/JaneliaSciComp/neuronbridge +update_date: 2026-07-27 documentation link: https://neuronbridge.janelia.org/help installation instructions link: https://github.com/JaneliaSciComp/neuronbridge/blob/master/docs/Development.md how to cite link: "https://doi.org/10.1186/s12859-024-05732-7" diff --git a/src/content/projects/neuvid.md b/src/content/projects/neuvid.md index 1b6dda0e..1bf112ed 100644 --- a/src/content/projects/neuvid.md +++ b/src/content/projects/neuvid.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Maintenance] OSSI proposal link: ../../proposals/neuvid.pdf github link: https://github.com/connectome-neuprint/neuVid +update_date: 2026-03-22 documentation link: https://github.com/connectome-neuprint/neuVid/tree/master/documentation installation instructions link: https://github.com/connectome-neuprint/neuVid?tab=readme-ov-file#usage-with-neuprint how to cite text: "Philip M. Hubbard, The newVid video generation system, https://zenodo.org/records/10805089" diff --git a/src/content/projects/nidaq.md b/src/content/projects/nidaq.md index c38063da..36aae5e1 100644 --- a/src/content/projects/nidaq.md +++ b/src/content/projects/nidaq.md @@ -5,6 +5,7 @@ maintainer: ben arthur #project type - Required. Pick one of the three options - delete the other two. project type: [Other] github link: https://github.com/JaneliaSciComp/NIDAQ.jl +update_date: 2026-02-08 documentation link: https://github.com/JaneliaSciComp/NIDAQ.jl?tab=readme-ov-file#national-instruments-data-acquisition-interface installation instructions link: https://github.com/JaneliaSciComp/NIDAQ.jl?tab=readme-ov-file#installation preferred contact method: mailto:arthurb@hhmi.org diff --git a/src/content/projects/ossi-website.md b/src/content/projects/ossi-website.md index c58d65f8..b64e4eb1 100644 --- a/src/content/projects/ossi-website.md +++ b/src/content/projects/ossi-website.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/ossi_website.pdf github link: https://github.com/JaneliaSciComp/ossi-website +update_date: 2026-03-25 documentation link: https://github.com/JaneliaSciComp/ossi-website installation instructions link: https://github.com/JaneliaSciComp/ossi-website?tab=readme-ov-file#how-to-addedit-your-software-project how to cite text: Cite the current deployment diff --git a/src/content/projects/paintera.md b/src/content/projects/paintera.md index 31b92c79..9646a603 100644 --- a/src/content/projects/paintera.md +++ b/src/content/projects/paintera.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/paintera.pdf github link: https://github.com/saalfeldlab/paintera +update_date: 2026-07-30 documentation link: https://github.com/saalfeldlab/paintera installation instructions link: https://github.com/saalfeldlab/paintera?tab=readme-ov-file#installation-and-usage how to cite link: https://zenodo.org/doi/10.5281/zenodo.3351562 diff --git a/src/content/projects/phase-diversity.md b/src/content/projects/phase-diversity.md index e358bcb4..150affe5 100755 --- a/src/content/projects/phase-diversity.md +++ b/src/content/projects/phase-diversity.md @@ -4,6 +4,7 @@ tagline: Software for analyzing phase diversity data for adaptive optics maintainer: Magdalena Schneider project type: [Other] github link: https://github.com/ceej640/PhaseDiversity +update_date: 2025-02-25 documentation link: https://github.com/ceej640/PhaseDiversity?tab=readme-ov-file#phase-diversity-wavefront-sensing-for-microscopy installation instructions link: https://github.com/ceej640/PhaseDiversity#Installation how to cite text: "Cite the corresponding paper: Johnson et al., Optica (2024)" diff --git a/src/content/projects/rastermap.md b/src/content/projects/rastermap.md index 444b4e95..483e3501 100644 --- a/src/content/projects/rastermap.md +++ b/src/content/projects/rastermap.md @@ -5,6 +5,7 @@ maintainer: Carsen Stringer #project type - Required. Pick one of the three options - delete the other two. project type: [Other] github link: https://github.com/mouseland/rastermap +update_date: 2025-04-04 documentation link: https://github.com/mouseland/rastermap?tab=readme-ov-file#rastermap installation instructions link: https://github.com/mouseland/rastermap?tab=readme-ov-file#installation # preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." diff --git a/src/content/projects/rs-fish.md b/src/content/projects/rs-fish.md index 56e848de..986983e0 100644 --- a/src/content/projects/rs-fish.md +++ b/src/content/projects/rs-fish.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Maintenance] OSSI proposal link: ../../proposals/spatial_transcriptomics_tools.pdf github link: https://github.com/PreibischLab/RS-FISH +update_date: 2025-02-04 additional links array: [https://github.com/PreibischLab/RS-FISH-Spark] documentation link: https://github.com/PreibischLab/RS-FISH installation instructions link: https://github.com/PreibischLab/RS-FISH?tab=readme-ov-file#download diff --git a/src/content/projects/songexplorer.md b/src/content/projects/songexplorer.md index 503525c3..a8681b4b 100644 --- a/src/content/projects/songexplorer.md +++ b/src/content/projects/songexplorer.md @@ -5,6 +5,7 @@ maintainer: ben arthur #project type - Required. Pick one of the three options - delete the other two. project type: [Other] github link: https://github.com/JaneliaSciComp/SongExplorer +update_date: 2026-04-10 documentation link: https://github.com/JaneliaSciComp/SongExplorer?tab=readme-ov-file#table-of-contents installation instructions link: https://github.com/JaneliaSciComp/SongExplorer?tab=readme-ov-file#installation preferred contact method: mailto:arthurb@hhmi.org diff --git a/src/content/projects/stim.md b/src/content/projects/stim.md index 3867968c..d7895754 100644 --- a/src/content/projects/stim.md +++ b/src/content/projects/stim.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/spatial_transcriptomics_tools.pdf github link: https://github.com/PreibischLab/STIM +update_date: 2025-05-27 documentation link: https://github.com/PreibischLab/STIM/wiki how to cite link: https://doi.org/10.1016/j.cels.2025.101264 how to cite text: "S. Preibisch, N. Karaiskos, N.Rajewsky, Scalable image-based visualization and alignment of spatial transcriptomics datasets. Cell Systems, Vol. 16, No. 5 (2025)." diff --git a/src/content/projects/stitching-spark.md b/src/content/projects/stitching-spark.md index f2483f6f..b460b18d 100644 --- a/src/content/projects/stitching-spark.md +++ b/src/content/projects/stitching-spark.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Accepted] OSSI proposal link: ../../proposals/petascale_lightsheet.pdf github link: https://github.com/saalfeldlab/stitching-spark +update_date: 2023-10-17 documentation link: https://github.com/saalfeldlab/stitching-spark installation instructions link: https://github.com/saalfeldlab/stitching-spark?tab=readme-ov-file#usage how to cite link: https://doi.org/10.1126/science.aau8302 diff --git a/src/content/projects/suite2p.md b/src/content/projects/suite2p.md index 94c2a52c..dc3c7842 100644 --- a/src/content/projects/suite2p.md +++ b/src/content/projects/suite2p.md @@ -6,6 +6,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/suite2p_and_cellpose.pdf github link: https://github.com/MouseLand/suite2p +update_date: 2026-07-01 documentation link: https://suite2p.readthedocs.io/en/latest/ installation instructions link: https://github.com/MouseLand/suite2p?tab=readme-ov-file#local-installation how to cite link: https://doi.org/10.1101/061507 diff --git a/src/content/projects/traccuracy.md b/src/content/projects/traccuracy.md index 7e73d183..e852027a 100644 --- a/src/content/projects/traccuracy.md +++ b/src/content/projects/traccuracy.md @@ -8,6 +8,7 @@ project type: [Other] # OSSI project status: [Proposed, Accepted, Active Development, Maintenance] # OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal. github link: https://github.com/live-image-tracking-tools/traccuracy +update_date: 2026-07-27 documentation link: https://traccuracy.readthedocs.io/en/latest/ installation instructions link: https://traccuracy.readthedocs.io/en/latest/#installation # preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." diff --git a/src/content/projects/trainspikingnet.md b/src/content/projects/trainspikingnet.md index 8aa61911..bf34d35d 100755 --- a/src/content/projects/trainspikingnet.md +++ b/src/content/projects/trainspikingnet.md @@ -5,6 +5,7 @@ maintainer: ben arthur #project type - Required. Pick one of the three options - delete the other two. project type: [Other] github link: https://github.com/SpikingNetwork/TrainSpikingNet.jl +update_date: 2024-08-29 documentation link: https://github.com/SpikingNetwork/TrainSpikingNet.jl?tab=readme-ov-file installation instructions link: https://github.com/SpikingNetwork/TrainSpikingNet.jl?tab=readme-ov-file#installation preferred contact method: mailto:arthurb@hhmi.org diff --git a/src/content/projects/video-annotation-library.md b/src/content/projects/video-annotation-library.md index b76f3fe5..3255ea52 100644 --- a/src/content/projects/video-annotation-library.md +++ b/src/content/projects/video-annotation-library.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Active Development] OSSI proposal link: ../../proposals/video_annotation_library.pdf github link: https://github.com/JaneliaSciComp/videoAnnotation +update_date: 2026-07-28 documentation link: https://github.com/JaneliaSciComp/videoAnnotation installation instructions link: https://github.com/JaneliaSciComp/videoAnnotation how to cite link: https://github.com/JaneliaSciComp/videoAnnotation diff --git a/src/content/projects/vvd-viewer.md b/src/content/projects/vvd-viewer.md index d6b30276..29731711 100644 --- a/src/content/projects/vvd-viewer.md +++ b/src/content/projects/vvd-viewer.md @@ -7,6 +7,7 @@ project type: [OSSI - current] OSSI project status: [Maintenance] OSSI proposal link: ../../proposals/vvdviewer.pdf github link: https://github.com/JaneliaSciComp/VVDViewer +update_date: 2026-07-15 documentation link: https://github.com/JaneliaSciComp/VVDViewer/wiki installation instructions link: https://github.com/JaneliaSciComp/VVDViewer?tab=readme-ov-file#building-vvdviewer how to cite link: https://doi.org/10.5281/zenodo.5841616 diff --git a/src/content/projects/x2s3.md b/src/content/projects/x2s3.md index f04e340a..68d206e8 100644 --- a/src/content/projects/x2s3.md +++ b/src/content/projects/x2s3.md @@ -5,6 +5,7 @@ maintainer: Konrad Rokicki preferred contact method: https://github.com/JaneliaSciComp/x2s3/issues project type: [Other] github link: https://github.com/JaneliaSciComp/x2s3 +update_date: 2026-07-30 documentation link: https://github.com/JaneliaSciComp/x2s3 installation instructions link: https://github.com/JaneliaSciComp/x2s3?tab=readme-ov-file#running how to cite link: https://github.com/JaneliaSciComp/x2s3 diff --git a/src/content/projects/zarrcade.md b/src/content/projects/zarrcade.md index d9e4d1c8..cc75c9c8 100644 --- a/src/content/projects/zarrcade.md +++ b/src/content/projects/zarrcade.md @@ -5,6 +5,7 @@ maintainer: Konrad Rokicki preferred contact method: https://github.com/JaneliaSciComp/zarrcade/issues project type: [Other] github link: https://github.com/JaneliaSciComp/zarrcade +update_date: 2026-07-07 documentation link: https://github.com/JaneliaSciComp/zarrcade installation instructions link: https://github.com/JaneliaSciComp/zarrcade?tab=readme-ov-file#getting-started how to cite link: https://github.com/JaneliaSciComp/zarrcade diff --git a/src/pages/projects/index.astro b/src/pages/projects/index.astro index 96e771fe..d0666722 100644 --- a/src/pages/projects/index.astro +++ b/src/pages/projects/index.astro @@ -30,6 +30,24 @@ const uniqueTags = getTagKeysAndValues(allProjects); const sortedTitles = allProjects .map((content) => content.data.title) .sort((a, b) => a.localeCompare(b)); + +// project titles sorted by update_date, oldest-to-newest; projects with no +// known update_date are left at the end regardless of sort direction +const undatedTitles = allProjects + .filter((content) => !content.data.update_date) + .map((content) => content.data.title); +const titlesByUpdateDateAsc = allProjects + .filter((content) => content.data.update_date) + .sort((a, b) => a.data.update_date - b.data.update_date) + .map((content) => content.data.title); + +// maps each selectable "sort by" key to its pre-sorted array of titles; +// consumed by CardContainer to position each card via CSS order +const sortedTitlesMap = { + alphabetical: sortedTitles, + "updated-newest": [...titlesByUpdateDateAsc].reverse().concat(undatedTitles), + "updated-oldest": [...titlesByUpdateDateAsc, ...undatedTitles], +}; --- @@ -78,7 +96,7 @@ const sortedTitles = allProjects projectType={content.data["project type"][0]} contentType="projects" maxLength={allProjects.length} - sortedTitles={sortedTitles} + sortedTitlesMap={sortedTitlesMap} client:only="react" > {content.data["image file"] ? ( From 651df174b6f6350575e0399836d785c81abe0ffb Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Fri, 28 Aug 2026 14:52:13 -0400 Subject: [PATCH 03/13] Chore: adjust filter menu font --- src/components/projects/FilterMenu.jsx | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/components/projects/FilterMenu.jsx b/src/components/projects/FilterMenu.jsx index 52b8b9df..cbd705a5 100644 --- a/src/components/projects/FilterMenu.jsx +++ b/src/components/projects/FilterMenu.jsx @@ -122,7 +122,8 @@ export default function FilterMenu({ uniqueTags }) { )}
    -

    Sort by

    +

    Sort by

    +
    • Date: Mon, 14 Sep 2026 13:41:37 -0400 Subject: [PATCH 04/13] feat: move sort options into their own SortMenu component The sort options lived inside FilterMenu, which coupled them to the tag-filter drawer on small screens and made the sidebar spacing inconsistent with SearchInput. SortMenu now renders standalone on the projects page, matching the SearchInput and FilterMenu pattern: a title, a Reset button, and the option list. On small screens the drawer stays tag-filters only. Sort becomes an MUI Select beside the "Filter by tag" button, reusing the Select and Option primitives from ProjectTypeDropdown for consistent styling. The "No sorting" option acts as the reset there, so no separate button is needed. The ecosystems page never wired up sortedTitlesMap, so the sort options that previously rendered there did nothing. They no longer render on that page. --- src/components/projects/FilterMenu.jsx | 49 --------------- .../projects/ProjectTypeDropdown.jsx | 4 +- src/components/projects/SortMenu.jsx | 62 +++++++++++++++++++ .../projects/ToggleFilterMenuBtn.jsx | 2 +- src/pages/projects/index.astro | 7 ++- 5 files changed, 71 insertions(+), 53 deletions(-) create mode 100644 src/components/projects/SortMenu.jsx diff --git a/src/components/projects/FilterMenu.jsx b/src/components/projects/FilterMenu.jsx index cbd705a5..40ec8ce5 100644 --- a/src/components/projects/FilterMenu.jsx +++ b/src/components/projects/FilterMenu.jsx @@ -6,14 +6,12 @@ import { toggleVisibility, } from "@stores/isFilterMenuVisibleStore.js"; import { selectedTags, handleTagSelection } from "@stores/selectedTagsStore.js"; -import { selectedSort, handleSortSelection } from "@stores/selectedSortStore.js"; import { getBackgroundColor } from "@utils/getTagBgColor"; const OMIT_TAG_CATEGORIES = ["software ecosystem", "supported file types"]; export default function FilterMenu({ uniqueTags }) { const $selectedTags = useStore(selectedTags); - const $selectedSort = useStore(selectedSort); //used to manage state for the close ("x") button on the small screen filter menu const $isFilterMenuVisible = useStore(isFilterMenuVisible); @@ -120,53 +118,6 @@ export default function FilterMenu({ uniqueTags }) {
    ) )} - -
    -

    Sort by

    - -
      -
    • handleSortSelection("alphabetical")} - > -
      - Alphabetical (A–Z) -
      -
      • -
    • handleSortSelection("updated-newest")} - > -
      - Last updated (newest first) -
      -
      • -
    • handleSortSelection("updated-oldest")} - > -
      - Last updated (oldest first) -
      -
      • -
    -
    diff --git a/src/components/projects/ProjectTypeDropdown.jsx b/src/components/projects/ProjectTypeDropdown.jsx index 26b9e490..f2611214 100644 --- a/src/components/projects/ProjectTypeDropdown.jsx +++ b/src/components/projects/ProjectTypeDropdown.jsx @@ -31,7 +31,7 @@ const getOptionColorClasses = ({ selected, highlighted, disabled }) => { return classes; }; -const Option = React.forwardRef((props, ref) => { +export const Option = React.forwardRef((props, ref) => { return ( typeof fn === "function" ? fn(args) : fn; // I added the prop "multiple" to allow for multiple selections -const Select = React.forwardRef(function CustomSelect(props, ref) { +export const Select = React.forwardRef(function CustomSelect(props, ref) { return ( +

    Sort by

    +
    +

    Sort by

    + +
    + +
    + +
    + +
      + {SORT_OPTIONS.map(({ key, label }) => ( +
    • handleSortSelection(key)} + > +
      + {label} +
      +
      • + ))} +
    +
    + ); +} diff --git a/src/components/projects/ToggleFilterMenuBtn.jsx b/src/components/projects/ToggleFilterMenuBtn.jsx index f622cdcf..199883cd 100644 --- a/src/components/projects/ToggleFilterMenuBtn.jsx +++ b/src/components/projects/ToggleFilterMenuBtn.jsx @@ -24,7 +24,7 @@ export default function ToggleFilterMenuBtn() { > {numFilters} -

    Filter by tag

    +

    Filter by tag

    ); diff --git a/src/pages/projects/index.astro b/src/pages/projects/index.astro index d0666722..098b0e5a 100644 --- a/src/pages/projects/index.astro +++ b/src/pages/projects/index.astro @@ -14,6 +14,7 @@ import ProjectCount from "@components/projects/ProjectCount"; import ProjectTypeBtns from "@components/projects/ProjectTypeBtns"; import ProjectTypeDropdown from "@components/projects/ProjectTypeDropdown"; import SearchInput from "@components/projects/SearchInput"; +import SortMenu from "@components/projects/SortMenu"; import Tag from "@components/projects/Tag.astro"; import ToggleFilterMenuBtn from "@components/projects/ToggleFilterMenuBtn"; @@ -64,8 +65,12 @@ const sortedTitlesMap = { >
    - + +
    + + +
    From ced0d05d2d8c3c971cda0912ff4eb5d08f35ac5a Mon Sep 17 00:00:00 2001 From: Allison Truhlar Date: Mon, 14 Sep 2026 13:41:37 -0400 Subject: [PATCH 05/13] fix: align filter menu spacing and show its title on all screens The "Filter by tag" heading and Reset button were hidden below the md breakpoint, so the drawer had no label. The header now shows on all screen sizes. On md+ the header top padding and the empty bottom button row added extra height, so the gap between the filter list and the sort menu didn't match the gap between the search input and the filter list. Both gaps are now 32px. --- src/components/projects/FilterMenu.jsx | 15 +++++---------- 1 file changed, 5 insertions(+), 10 deletions(-) diff --git a/src/components/projects/FilterMenu.jsx b/src/components/projects/FilterMenu.jsx index 40ec8ce5..8ebfadc0 100644 --- a/src/components/projects/FilterMenu.jsx +++ b/src/components/projects/FilterMenu.jsx @@ -51,7 +51,7 @@ export default function FilterMenu({ uniqueTags }) {
    - {/* This h3 and button are visible only on medium and larger screen sizes */} -
    +

    Filter by tag

    - {/* This reset button is visible on small screens */} -
    From 6203ab046f93531194f139a9ec6518bfd9e69053 Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Mon, 5 Oct 2026 11:59:55 -0400 Subject: [PATCH 06/13] Chore: update package-lock --- package-lock.json | 1407 +++++++++++++++------------------------------ 1 file changed, 470 insertions(+), 937 deletions(-) diff --git a/package-lock.json b/package-lock.json index 8c911ddb..e5b5ea2e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -51,41 +51,19 @@ "url": "https://github.com/sponsors/sindresorhus" } }, - "node_modules/@ampproject/remapping": { - "version": "2.3.0", - "resolved": "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.3.0.tgz", - "integrity": "sha512-30iZtAPgz+LTIYoeivqYo853f02jBYSd5uGnGpkFV0M3xOt9aN73erkgYAmZU43x4VfqcnLxW9Kpg3R5LC4YYw==", - "license": "Apache-2.0", - "dependencies": { - "@jridgewell/gen-mapping": "^0.3.5", - "@jridgewell/trace-mapping": "^0.3.24" - }, - "engines": { - "node": ">=6.0.0" - } - }, "node_modules/@antfu/install-pkg": { - "version": "1.1.0", - "resolved": "https://registry.npmjs.org/@antfu/install-pkg/-/install-pkg-1.1.0.tgz", - "integrity": "sha512-MGQsmw10ZyI+EJo45CdSER4zEb+p31LpDAFp2Z3gkSd1yqVZGi0Ebx++YTEMonJy4oChEMLsxZ64j8FH6sSqtQ==", + "version": "2.1.0", + "resolved": "https://registry.npmjs.org/@antfu/install-pkg/-/install-pkg-2.1.0.tgz", + "integrity": "sha512-sdg9NxU3zR4Mnawfbc/x6GB5Wf17WYud5qOuEuxXjaKpYpMkISSJEjItGebXJ2bQ4DIcly4NYH23mtkGJjvKUw==", "license": "MIT", "dependencies": { - "package-manager-detector": "^1.3.0", - "tinyexec": "^1.0.1" + "package-manager-detector": "^1.8.0", + "tinyexec": "^1.3.1" }, "funding": { "url": "https://github.com/sponsors/antfu" } }, - "node_modules/@antfu/utils": { - "version": "8.1.1", - "resolved": "https://registry.npmjs.org/@antfu/utils/-/utils-8.1.1.tgz", - "integrity": "sha512-Mex9nXf9vR6AhcXmMrlz/HVgYYZpVGJ6YlPgwl7UnaFpnshXs6EK/oa5Gpf3CzENMjkvEx2tQtntGnb7UtSTOQ==", - "license": "MIT", - "funding": { - "url": "https://github.com/sponsors/antfu" - } - }, "node_modules/@astro-community/astro-embed-integration": { "version": "0.7.2", "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-integration/-/astro-embed-integration-0.7.2.tgz", @@ -114,17 +92,20 @@ } }, "node_modules/@astro-community/astro-embed-twitter": { - "version": "0.5.6", - "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-twitter/-/astro-embed-twitter-0.5.6.tgz", - "integrity": "sha512-ywUjNhYbGW17vAQXj2tMus9JvLw8cwgzMshu6tVkzSRlyOoLFeWSNKwe44sU7REhUgmTCEQOUUfleN1j1Zwd4Q==", + "version": "0.5.11", + "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-twitter/-/astro-embed-twitter-0.5.11.tgz", + "integrity": "sha512-6cmyQY4LVVJj6x7qC6XrhWcxNffLvR+QGE/iw5HTOtAn60AStr6u+IX2Txpy6N6bta0DLjGqhTBhkC3NxmVKJg==", "license": "MIT", "dependencies": { - "@astro-community/astro-embed-utils": "^0.1.0" - }, - "peerDependencies": { - "astro": "^2.0.0 || ^3.0.0-beta || ^4.0.0-beta || ^5.0.0-beta" + "@astro-community/astro-embed-utils": "^0.2.0" } }, + "node_modules/@astro-community/astro-embed-twitter/node_modules/@astro-community/astro-embed-utils": { + "version": "0.2.0", + "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-utils/-/astro-embed-utils-0.2.0.tgz", + "integrity": "sha512-Ia70AMCFOUOSoaMfMaK7Ovk7VyIY4opwzBJoA6GeL+omkvpFwDbSWmA8MOiMF4gJC0j/1dgrEir+txIb+WvsCA==", + "license": "MIT" + }, "node_modules/@astro-community/astro-embed-utils": { "version": "0.1.3", "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-utils/-/astro-embed-utils-0.1.3.tgz", @@ -135,27 +116,27 @@ } }, "node_modules/@astro-community/astro-embed-vimeo": { - "version": "0.3.10", - "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-vimeo/-/astro-embed-vimeo-0.3.10.tgz", - "integrity": "sha512-H7v8BozWXG+EhIOn1DcNKLRO6z3bNXZVESUR25mNFiDd3Ue8MEzp8mWkBeRd6Y2onV9acxR34ZhXN36fsSb8bA==", + "version": "0.3.12", + "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-vimeo/-/astro-embed-vimeo-0.3.12.tgz", + "integrity": "sha512-VLNcsniT5qZ/7GaSGFWnX4ar0qcGyAYB1HQnAH362Zjqs0QI2he9u1nWv1kEx4xr3fZVxl6D2QuNN4xKtd8/ig==", "license": "MIT", "dependencies": { - "@astro-community/astro-embed-utils": "^0.1.2" - }, - "peerDependencies": { - "astro": "^2.0.0 || ^3.0.0-beta || ^4.0.0-beta || ^5.0.0-beta" + "@astro-community/astro-embed-utils": "^0.2.0" } }, + "node_modules/@astro-community/astro-embed-vimeo/node_modules/@astro-community/astro-embed-utils": { + "version": "0.2.0", + "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-utils/-/astro-embed-utils-0.2.0.tgz", + "integrity": "sha512-Ia70AMCFOUOSoaMfMaK7Ovk7VyIY4opwzBJoA6GeL+omkvpFwDbSWmA8MOiMF4gJC0j/1dgrEir+txIb+WvsCA==", + "license": "MIT" + }, "node_modules/@astro-community/astro-embed-youtube": { - "version": "0.5.5", - "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-youtube/-/astro-embed-youtube-0.5.5.tgz", - "integrity": "sha512-pG9uYjyZB1kpW8Ljy/H1Klof2txVXLwQmyoG4XWblZyt9eqFlaa65MdzL7UKzzqdoOsn64TN+Q+zPbx0HJhP4Q==", + "version": "0.5.10", + "resolved": "https://registry.npmjs.org/@astro-community/astro-embed-youtube/-/astro-embed-youtube-0.5.10.tgz", + "integrity": "sha512-hVlx77KQLjKzElVQnrU5znQ5/E60keVSAPrhuWvQQHuqva5auJtt8YBpOThkwDMuEKXjQybEF1/3C07RZ8MAOQ==", "license": "MIT", "dependencies": { - "lite-youtube-embed": "^0.3.3" - }, - "peerDependencies": { - "astro": "^2.0.0 || ^3.0.0-beta || ^4.0.0-beta || ^5.0.0-beta" + "lite-youtube-embed": "^0.3.4" } }, "node_modules/@astrojs/compiler": { @@ -232,13 +213,13 @@ } }, "node_modules/@astrojs/tailwind": { - "version": "5.1.3", - "resolved": "https://registry.npmjs.org/@astrojs/tailwind/-/tailwind-5.1.3.tgz", - "integrity": "sha512-XF7WhXRhqEHGvADqc0kDtF7Yv/g4wAWTaj91jBBTBaYnc4+MQLH94duFfFa4NlTkRG40VQd012eF3MhO3Kk+bg==", + "version": "5.1.5", + "resolved": "https://registry.npmjs.org/@astrojs/tailwind/-/tailwind-5.1.5.tgz", + "integrity": "sha512-1diguZEau7FZ9vIjzE4BwavGdhD3+JkdS8zmibl1ene+EHgIU5hI0NMgRYG3yea+Niaf7cyMwjeWeLvzq/maxg==", "license": "MIT", "dependencies": { "autoprefixer": "^10.4.20", - "postcss": "^8.4.49", + "postcss": "^8.5.1", "postcss-load-config": "^4.0.2" }, "peerDependencies": { @@ -265,12 +246,12 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.29.0", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.29.0.tgz", - "integrity": "sha512-9NhCeYjq9+3uxgdtp20LSiJXJvN0FeCtNGpJxuMFZ1Kv3cWUNb6DOhJwUvcVCzKGR66cw4njwM6hrJLqgOwbcw==", + "version": "7.29.7", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.29.7.tgz", + "integrity": "sha512-Aup7aUOfpbAUg2ROOJN6Iw5f9DMBlzu0mIkm/malLQFN/YQgO48wCj0Kxa3sEHJvPVFg7siR+qRInwXd2qhQKw==", "license": "MIT", "dependencies": { - "@babel/helper-validator-identifier": "^7.28.5", + "@babel/helper-validator-identifier": "^7.29.7", "js-tokens": "^4.0.0", "picocolors": "^1.1.1" }, @@ -279,30 +260,30 @@ } }, "node_modules/@babel/compat-data": { - "version": "7.26.3", - "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.26.3.tgz", - "integrity": "sha512-nHIxvKPniQXpmQLb0vhY3VaFb3S0YrTAwpOWJZh1wn3oJPjJk9Asva204PsBdmAE8vpzfHudT8DB0scYvy9q0g==", + "version": "7.29.7", + "resolved": "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.29.7.tgz", + "integrity": "sha512-locTkQyKvwIEgBzVrn8693ebc97F2U8ZHjbXwDXJ5Fn2TCpNwTlKcaKLkdHop5c/icOFE7qt7Q9JC5hnKNa6Gg==", "license": "MIT", "engines": { "node": ">=6.9.0" } }, "node_modules/@babel/core": { - 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"version": "1.1.1", - "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.1.1.tgz", - "integrity": "sha512-R8UzCaa9Az+38REPiJ1tXlImTJXlVfgHZsglwBD/k6nj76ctsH1E3q4doGrukiLQd3sGQYu56r5+lo5r94l29A==", + "version": "1.3.3", + "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.3.3.tgz", + "integrity": "sha512-pJ2sYawQS0R/WI928Gj5GlPhTGzbMelq0+4INtSYNDV9ErKJcX6xjGWkoG/VnB3dpUm00zALaqkrUD77pO5TDQ==", "funding": [ { "type": "opencollective", @@ -8615,7 +8180,7 @@ "license": "MIT", "dependencies": { "escalade": "^3.2.0", - "picocolors": "^1.1.0" + "picocolors": "^1.1.1" }, "bin": { "update-browserslist-db": "cli.js" @@ -8691,9 +8256,9 @@ "license": "MIT" }, "node_modules/vite": { - "version": "6.4.1", - "resolved": "https://registry.npmjs.org/vite/-/vite-6.4.1.tgz", - "integrity": "sha512-+Oxm7q9hDoLMyJOYfUYBuHQo+dkAloi33apOPP56pzj+vsdJDzr+j1NISE5pyaAuKL4A3UD34qd0lx5+kfKp2g==", + "version": "6.4.3", + "resolved": "https://registry.npmjs.org/vite/-/vite-6.4.3.tgz", + "integrity": "sha512-NTKlcQjlAK7MlQoyb6LgaqHc8sso/pVyUJYWMws3jg21uTJw/LddqIFPcPqP6PzpgbIcZyKI85sFE4HBrQDA8A==", "license": "MIT", "dependencies": { "esbuild": "^0.25.0", @@ -8822,28 +8387,6 @@ "url": "https://github.com/sponsors/wooorm" } }, - "node_modules/whatwg-encoding": { - "version": "3.1.1", - "resolved": "https://registry.npmjs.org/whatwg-encoding/-/whatwg-encoding-3.1.1.tgz", - "integrity": "sha512-6qN4hJdMwfYBtE3YBTTHhoeuUrDBPZmbQaxWAqSALV/MeEnR5z1xd8UKud2RAkFoPkmB+hli1TZSnyi84xz1vQ==", - "deprecated": "Use @exodus/bytes instead for a more spec-conformant and faster implementation", - "license": "MIT", - "dependencies": { - "iconv-lite": "0.6.3" - }, - "engines": { - "node": ">=18" - } - }, - "node_modules/whatwg-mimetype": { - "version": "4.0.0", - "resolved": "https://registry.npmjs.org/whatwg-mimetype/-/whatwg-mimetype-4.0.0.tgz", - "integrity": "sha512-QaKxh0eNIi2mE9p2vEdzfagOKHCcj1pJ56EEHGQOVxp8r9/iszLUUV7v89x9O1p/T+NlTM5W7jW6+cz4Fq1YVg==", - "license": "MIT", - "engines": { - "node": ">=18" - } - }, "node_modules/which": { "version": "2.0.2", "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz", @@ -9046,16 +8589,6 @@ "node": ">=12" } }, - "node_modules/yauzl": { - "version": "2.10.0", - "resolved": "https://registry.npmjs.org/yauzl/-/yauzl-2.10.0.tgz", - "integrity": "sha512-p4a9I6X6nu6IhoGmBqAcbJy1mlC4j27vEPZX9F4L4/vZT3Lyq1VkFHw/V/PUcB9Buo+DG3iHkT0x3Qya58zc3g==", - "license": "MIT", - "dependencies": { - "buffer-crc32": "~0.2.3", - "fd-slicer": "~1.1.0" - } - }, "node_modules/yocto-queue": { "version": "1.2.0", "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-1.2.0.tgz", From 889e5497f609e206ae59f8a56267e3949ed2e160 Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Fri, 9 Oct 2026 11:45:25 -0400 Subject: [PATCH 07/13] perf: pass per-card sortOrder instead of full sortedTitlesMap to CardContainer --- src/components/projects/CardContainer.jsx | 9 +++++---- src/pages/projects/index.astro | 8 +++++++- 2 files changed, 12 insertions(+), 5 deletions(-) diff --git a/src/components/projects/CardContainer.jsx b/src/components/projects/CardContainer.jsx index f027127b..9b253581 100644 --- a/src/components/projects/CardContainer.jsx +++ b/src/components/projects/CardContainer.jsx @@ -18,7 +18,8 @@ export default function CardContainer({ cardContent, contentType, maxLength, - sortedTitlesMap, + //sortedTitlesMap, + sortOrder }) { const [visible, setVisible] = useState("relative"); const [order, setOrder] = useState(0); @@ -58,9 +59,9 @@ export default function CardContainer({ const matchingIndex = findMatchingIndex(contentData, title); let itemOrder; if (urlQuery !== "") { - itemOrder = matchingIndex; - } else if (sortedTitlesMap && sortedTitlesMap[$selectedSort]) { - itemOrder = sortedTitlesMap[$selectedSort].indexOf(title); + itemOrder = matchingIndex; + } else if (sortOrder && Number.isInteger(sortOrder[$selectedSort])) { + itemOrder = sortOrder[$selectedSort]; } else { itemOrder = Math.floor(Math.random() * maxLength); } diff --git a/src/pages/projects/index.astro b/src/pages/projects/index.astro index 098b0e5a..183eb6ac 100644 --- a/src/pages/projects/index.astro +++ b/src/pages/projects/index.astro @@ -92,6 +92,12 @@ const sortedTitlesMap = { { allProjects.map((content) => { const tagsObj = getTagKeysAndValues(content); + const title=content.data.title; + const sortOrder = { + alphabetical: sortedTitlesMap.alphabetical.indexOf(title), + "updated-newest": sortedTitlesMap["updated-newest"].indexOf(title), + "updated-oldest": sortedTitlesMap["updated-oldest"].indexOf(title), + }; return ( {content.data["image file"] ? ( From 0406991af5de7d6e9a7ae04d95e06b5af446a54b Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Fri, 9 Oct 2026 12:53:33 -0400 Subject: [PATCH 08/13] chore: remove unused repo-dates.json from update-project-dates workflow --- .github/actions/repo-dates.json | 37 ---------------------- .github/actions/update-project-dates.js | 6 ++-- .github/workflows/update-project-dates.yml | 2 +- 3 files changed, 5 insertions(+), 40 deletions(-) delete mode 100644 .github/actions/repo-dates.json diff --git a/.github/actions/repo-dates.json b/.github/actions/repo-dates.json deleted file mode 100644 index 3bd20d43..00000000 --- a/.github/actions/repo-dates.json +++ /dev/null @@ -1,37 +0,0 @@ -{ - "turagalab/decode": "2023-06-22T11:37:19Z", - "janeliascicomp/bigstitcher-spark": "2026-08-01T20:13:27Z", - "preibischlab/bigstitcher": "2026-07-03T10:03:04Z", - "janeliascicomp/bigstream": "2026-07-30T23:38:10Z", - "saalfeldlab/bigwarp": "2026-07-29T18:47:26Z", - "mohinta2892/catena": "2026-05-18T12:52:09Z", - "mouseland/cellpose": "2026-06-14T13:21:03Z", - "janelia-cellmap/dacapo": "2026-04-24T15:25:37Z", - "janelia-flyem/dvid": "2026-07-25T01:05:08Z", - "janeliascicomp/multifish": "2026-04-15T13:08:03Z", - "janeliascicomp/entrypoints": "2021-01-03T20:07:50Z", - "mouseland/facemap": "2026-01-26T23:17:05Z", - "live-image-tracking-tools/geff": "2026-07-29T17:04:02Z", - "janeliascicomp/hortacloud": "2026-07-15T20:01:40Z", - "mouseland/kilosort": "2026-04-27T20:33:25Z", - "janeliascicomp/maru": "2021-08-31T21:45:55Z", - "funkelab/motile_tracker": "2026-08-03T15:11:00Z", - "janeliascicomp/neuronbridge": "2026-07-27T21:30:06Z", - "connectome-neuprint/neuvid": "2026-03-22T12:45:55Z", - "janeliascicomp/nidaq.jl": "2026-02-08T14:42:51Z", - "janeliascicomp/ossi-website": "2026-03-25T23:06:56Z", - "saalfeldlab/paintera": "2026-07-30T19:56:27Z", - "ceej640/phasediversity": "2025-02-25T19:27:04Z", - "mouseland/rastermap": "2025-04-04T17:38:27Z", - "preibischlab/rs-fish": "2025-02-04T15:48:48Z", - "janeliascicomp/songexplorer": "2026-04-10T18:05:33Z", - "preibischlab/stim": "2025-05-27T15:11:27Z", - "saalfeldlab/stitching-spark": "2023-10-17T14:27:21Z", - "mouseland/suite2p": "2026-07-01T15:11:01Z", - "live-image-tracking-tools/traccuracy": "2026-07-27T04:04:10Z", - "spikingnetwork/trainspikingnet.jl": "2024-08-29T16:11:49Z", - "janeliascicomp/videoannotation": "2026-07-28T15:49:31Z", - "janeliascicomp/vvdviewer": "2026-07-15T23:55:56Z", - "janeliascicomp/x2s3": "2026-07-30T12:19:49Z", - "janeliascicomp/zarrcade": "2026-07-07T00:58:57Z" -} diff --git a/.github/actions/update-project-dates.js b/.github/actions/update-project-dates.js index 4d7d14c6..8bb6973d 100644 --- a/.github/actions/update-project-dates.js +++ b/.github/actions/update-project-dates.js @@ -6,7 +6,7 @@ import { graphql } from "@octokit/graphql"; const __dirname = dirname(fileURLToPath(import.meta.url)); const PROJECTS_DIR = join(__dirname, "..", "..", "src", "content", "projects"); -const REPO_DATES_PATH = join(__dirname, "repo-dates.json"); +//const REPO_DATES_PATH = join(__dirname, "repo-dates.json"); const authToken = process.env.GITHUB_TOKEN || process.env.OSSI_SITE_TOKEN; if (!authToken) { @@ -114,7 +114,7 @@ try { process.exit(1); } -// 3. regenerate repo-dates.json wholesale: repo (owner/name, lowercased) -> pushedAt +// 3. build repoDates in memory: repo (owner/name, lowercased) -> pushedAt const repoDates = {}; uniqueRepos.forEach((p, i) => { const repoResult = result[`r${i}`]; @@ -127,10 +127,12 @@ uniqueRepos.forEach((p, i) => { } }); +/* writeFileSync(REPO_DATES_PATH, JSON.stringify(repoDates, null, 2) + "\n"); console.log( `Wrote ${Object.keys(repoDates).length} repo dates to ${REPO_DATES_PATH}` ); +*/ // 4. splice the resulting update_date into each project's frontmatter let updatedCount = 0; diff --git a/.github/workflows/update-project-dates.yml b/.github/workflows/update-project-dates.yml index 5c78c435..56cbbdcb 100644 --- a/.github/workflows/update-project-dates.yml +++ b/.github/workflows/update-project-dates.yml @@ -39,7 +39,7 @@ jobs: run: | git config user.name "github-actions[bot]" git config user.email "github-actions[bot]@users.noreply.github.com" - git add src/content/projects .github/actions/repo-dates.json + git add src/content/projects if git diff --cached --quiet; then echo "No changes to commit." else From 6e320b905ab459a47fab8f430675e44ddadd3b7d Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Mon, 12 Oct 2026 10:56:12 -0400 Subject: [PATCH 09/13] fix: tolerate partial GraphQL results in update-project-dates One renamed, deleted, or private repo made the batched query throw and the script exit, so no project dates updated. Recover the partial data from error.data and continue; the per-repo warning below reports the missing repos. Only exit when no data is returned. Addresses review feedback on #331. --- .github/actions/update-project-dates.js | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/.github/actions/update-project-dates.js b/.github/actions/update-project-dates.js index 8bb6973d..71d44577 100644 --- a/.github/actions/update-project-dates.js +++ b/.github/actions/update-project-dates.js @@ -6,7 +6,6 @@ import { graphql } from "@octokit/graphql"; const __dirname = dirname(fileURLToPath(import.meta.url)); const PROJECTS_DIR = join(__dirname, "..", "..", "src", "content", "projects"); -//const REPO_DATES_PATH = join(__dirname, "repo-dates.json"); const authToken = process.env.GITHUB_TOKEN || process.env.OSSI_SITE_TOKEN; if (!authToken) { @@ -110,8 +109,14 @@ let result; try { result = await graphqlWithAuth(query, variables); } catch (error) { - console.error("GraphQL query failed:", error.message); - process.exit(1); + if (error.data){ + console.warn("GraphQL returned partial data:", error.message); + result = error.data; + } + else { + console.error("GraphQL query failed:", error.message); + process.exit(1); + } } // 3. build repoDates in memory: repo (owner/name, lowercased) -> pushedAt @@ -127,13 +132,6 @@ uniqueRepos.forEach((p, i) => { } }); -/* -writeFileSync(REPO_DATES_PATH, JSON.stringify(repoDates, null, 2) + "\n"); -console.log( - `Wrote ${Object.keys(repoDates).length} repo dates to ${REPO_DATES_PATH}` -); -*/ - // 4. splice the resulting update_date into each project's frontmatter let updatedCount = 0; for (const project of projectRepos) { From de4c3c94c6f0a482261ae23b085fc01d2ec964e9 Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Mon, 12 Oct 2026 11:30:56 -0400 Subject: [PATCH 10/13] fix: trigger deploy after bot commits updated project dates Pushes made with GITHUB_TOKEN do not fire on: push workflows, so the site was never redeployed after the weekly date update. Dispatch deploy-to-github-pages.yml explicitly after a successful push, and grant the job actions: write. Addresses review feedback on #331. --- .github/workflows/update-project-dates.yml | 13 +++++++++++-- 1 file changed, 11 insertions(+), 2 deletions(-) diff --git a/.github/workflows/update-project-dates.yml b/.github/workflows/update-project-dates.yml index 56cbbdcb..8a041a78 100644 --- a/.github/workflows/update-project-dates.yml +++ b/.github/workflows/update-project-dates.yml @@ -10,6 +10,7 @@ on: permissions: contents: write + actions: write jobs: update-dates: @@ -35,14 +36,22 @@ jobs: env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - - name: Commit changes + - name: Commit and push changes + id: commit run: | git config user.name "github-actions[bot]" git config user.email "github-actions[bot]@users.noreply.github.com" - git add src/content/projects + git add src/content/projects if git diff --cached --quiet; then echo "No changes to commit." else git commit -m "chore: update project last-updated dates" git push + echo "pushed=true" >> "$GITHUB_OUTPUT" fi + + - name: Trigger deploy + if: steps.commit.outputs.pushed == 'true' + run: gh workflow run deploy-to-github-pages.yml + env: + GH_TOKEN: ${{ github.token }} From d26162af531c7b153c384f858a1df5d92ae7b92f Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Thu, 15 Oct 2026 17:00:08 -0400 Subject: [PATCH 11/13] fix: add update date to project md --- src/content/projects/fileglancer.md | 1 + 1 file changed, 1 insertion(+) diff --git a/src/content/projects/fileglancer.md b/src/content/projects/fileglancer.md index 4160e4ce..788cce54 100644 --- a/src/content/projects/fileglancer.md +++ b/src/content/projects/fileglancer.md @@ -8,6 +8,7 @@ project type: [Other] # OSSI project status: [Proposed, Accepted, Active Development, Maintenance] # OSSI proposal link: Required if your project is OSSI-funded. Preferred - upload the proposal as a PDF to `public/proposals` and provide the link in the format `../../proposals/PROPOSAL.pdf`. Other option - URL to the externally hosted proposal. github link: https://github.com/JaneliaSciComp/fileglancer +update_date: 2026-10-15 documentation link: https://fileglancer-docs.janelia.org installation instructions link: https://github.com/JaneliaSciComp/fileglancer#installation # preferred contact method: "Creates the link for the 'Reach out for help' button on the project page. Encouraged if there is a preferred way for users to reach out for help other than creating an issue in the project's GitHub repo. Examples: link to Image.sc forum, or an email in the format of mailto:email@example.com." From 2fa97bd098c8833ad337071dadecfa3eef154f3d Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Thu, 15 Oct 2026 17:13:55 -0400 Subject: [PATCH 12/13] fix: correct update_date field in projects content schema --- src/content.config.ts | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/content.config.ts b/src/content.config.ts index 25108a33..fa08c7af 100644 --- a/src/content.config.ts +++ b/src/content.config.ts @@ -12,7 +12,7 @@ const projectsCollection = defineCollection({ "OSSI project status": z.array(z.string()).optional(), "OSSI proposal link": z.string().optional(), "github link": z.string(), - update_date: z.coerce.date().optional(), + "update_date": z.coerce.date().optional(), "documentation link": z.string(), "installation instructions link": z.string().optional(), "how to cite text": z.string().nullish(), From 8c4189cc394e5f66485c9212e550026d8e5c32ad Mon Sep 17 00:00:00 2001 From: Mary Lay Date: Thu, 15 Oct 2026 17:31:57 -0400 Subject: [PATCH 13/13] fix: use grid layout at all breakpoints so card sort order applies on small screens --- src/pages/projects/index.astro | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/pages/projects/index.astro b/src/pages/projects/index.astro index 183eb6ac..5e83cfdb 100644 --- a/src/pages/projects/index.astro +++ b/src/pages/projects/index.astro @@ -87,7 +87,7 @@ const sortedTitlesMap = { client:only="react" />
    { allProjects.map((content) => {