Remove HDF5 file format support interface extension (#328)

* Remove HDF5 file format support interface extension

* PR328. Fix test data generation

Author: shssf

README.rst

@@ -168,6 +168,5 @@ Running unit tests
 ------------------
 ::
 
-    conda install h5py
     python sdc/tests/gen_test_data.py
     python -m unittest

buildscripts/sdc-conda-recipe/bld.bat

@@ -1,5 +1,4 @@
 echo on
 
-set HDF5_DIR="%LIBRARY_PREFIX%"
 "%PYTHON%" setup.py build install --single-version-externally-managed --record=record.txt
 if errorlevel 1 exit 1

buildscripts/sdc-conda-recipe/build.sh

@@ -1,4 +1,4 @@
 set -ex
 
-HDF5_DIR="${PREFIX}" MACOSX_DEPLOYMENT_TARGET=10.9 \
+MACOSX_DEPLOYMENT_TARGET=10.9 \
 $PYTHON setup.py build install --single-version-externally-managed --record=record.txt

buildscripts/sdc-conda-recipe/meta.yaml

@@ -33,8 +33,6 @@ requirements:
     - pyarrow {{ PYARROW_VERSION }}
     - arrow-cpp {{ ARROW_CPP_VERSION }}
     - boost
-    - hdf5
-    - h5py
     - mpich                           # [not win]
     - impi_rt                         # [win]
     - impi-devel                      # [win]
@@ -55,7 +53,6 @@ requirements:
 
 test:
   requires:
-    - h5py
     - scipy
   imports:
     - sdc
@@ -78,8 +75,6 @@ outputs:
         - pyarrow {{ PYARROW_VERSION }}
         - arrow-cpp {{ PYARROW_VERSION }}
         - boost
-        - hdf5
-        - h5py
         - mpich                           # [not win]
         - impi_rt                         # [win]
         - impi-devel                      # [win]

buildscripts/test.py

@@ -112,8 +112,7 @@
             format_print('Coverage can be run only on Linux of mac for now')
             sys.exit(0)
 
-        os.environ['HDF5_DIR'] = conda_prefix
-        coverage_omit = './sdc/ml/*,./sdc/cv_ext.py,./sdc/tests/*'
+        coverage_omit = './sdc/tests/*'
         coverage_cmd = ' && '.join(['coverage erase',
                                    f'coverage run --source=./sdc --omit {coverage_omit} ./sdc/runtests.py',
                                    'coveralls -v'])