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Copy pathmodules.json
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194 lines (194 loc) · 9.04 KB
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{
"name": "IntGenomicsLab/lrsinglecell",
"homePage": "https://github.com/IntGenomicsLab/lrsinglecell",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bamtools/split": {
"branch": "master",
"git_sha": "8c8ee20d5b87647b24df0c95296b2a9854a139aa",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "7ed72ef972290b93d0bdd7c60ff00a693250f77a",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"csvtk/concat": {
"branch": "master",
"git_sha": "2f74af306499775ab48db1ed4077d2fa5aecf9c4",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "ad65d06c959cff1da9e94c4a972deaf7430931fa",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "18eb358065b06f2d3419e37383b002fe7db3da02",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "c9ad4d691aa339e478a77847e3ef854ccd21778b",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "5c9f8d5b7671237c906abadc9ff732b301ca15ca",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
"git_sha": "14980f759266eec42dac401fcafeb83d6c957b41",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/index/minimap2-index.diff"
},
"multiqc": {
"branch": "master",
"git_sha": "98403d15b0e50edae1f3fec5eae5e24982f1fade",
"installed_by": ["modules"]
},
"nanocomp": {
"branch": "master",
"git_sha": "2956d489fac13be1b7c8d54effd766a1965cd3de",
"installed_by": ["modules"],
"patch": "modules/nf-core/nanocomp/nanocomp.diff"
},
"nanoplot": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"],
"patch": "modules/nf-core/nanoplot/nanoplot.diff"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "a631e12055f6c23ba2c942d3902b3ed1b9eed859",
"installed_by": ["modules"],
"patch": "modules/nf-core/picard/markduplicates/picard-markduplicates.diff"
},
"pigz/compress": {
"branch": "master",
"git_sha": "c908ccaf0a5c802b6f8e814d8c5cf85da2364222",
"installed_by": ["modules"]
},
"pigz/uncompress": {
"branch": "master",
"git_sha": "f84336b7fa91a65aa61d215b8c109fbb8e4b4ac6",
"installed_by": ["modules"],
"patch": "modules/nf-core/pigz/uncompress/pigz-uncompress.diff"
},
"rseqc/readdistribution": {
"branch": "master",
"git_sha": "eed5d14302a6c9070dcc25feeab707a27a4b3254",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b2e78932ef01165fd85829513eaca29eff8e640a",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "1d2fbdcbca677bbe8da0f9d0d2bb7c02f2cab1c9",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "1d2fbdcbca677bbe8da0f9d0d2bb7c02f2cab1c9",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "1d2fbdcbca677bbe8da0f9d0d2bb7c02f2cab1c9",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "440edf75d8782913115a7b72a88392a227f72cc1",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "fe93fde0845f907fc91ad7cc7d797930408824df",
"installed_by": ["bam_stats_samtools"]
},
"samtools/view": {
"branch": "master",
"git_sha": "b2e78932ef01165fd85829513eaca29eff8e640a",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/view/samtools-view.diff"
},
"seqkit/split2": {
"branch": "master",
"git_sha": "f03a30b46ebe59ba12b79115f05ab545d5ca2e5e",
"installed_by": ["modules"]
},
"toulligqc": {
"branch": "master",
"git_sha": "d9137377f4dd6246242829772eb1949b96de1ef0",
"installed_by": ["modules"],
"patch": "modules/nf-core/toulligqc/toulligqc.diff"
},
"ucsc/gtftogenepred": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"umitools/dedup": {
"branch": "master",
"git_sha": "bd6d730b3f32742f402189113ba9480006a3350f",
"installed_by": ["modules"],
"patch": "modules/nf-core/umitools/dedup/umitools-dedup.diff"
},
"unzipfiles": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "7ac6cbe7c17c2dad685da7f70496c8f48ea48687",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "7ac6cbe7c17c2dad685da7f70496c8f48ea48687",
"installed_by": ["bam_sort_stats_samtools"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "6ef220fd9252b42fb3c50348bbdbcb6246730686",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
"installed_by": ["subworkflows"]
}
}
}
}
}
}