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docs/Installation/Troubleshooting/index.rst

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@@ -231,3 +231,22 @@ Is because you tryed to install xmipp in release mode and you abort the installa
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and remove that 'xmipp3' folder
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libhdf5_cpp.so: undefined reference to `__cxa_call_terminate@CXXABI_1.3.15'\ncollect2:`
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^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
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If an error like this arise:
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::
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Error 2\n/usr/bin/ld: /home/REDACTED/miniforge3/envs/scipion3/lib/libhdf5_cpp.so: undefined reference to `__cxa_call_terminate@CXXABI_1.3.15'\ncollect2:
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Is because hdf5 was installed in a conda environment with the last version and the compiler of the system is older than GCC 13. For this reason, it is **required to explicitly install a compatible HDF5 version** inside the Scipion Conda environment:
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.. code-block:: bash
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scipion3 run conda install conda-forge::hdf5==1.12.2
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This version is known to be compatible with older GCC compilers commonly found on supported Linux distributions.
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