test(missing): pin _knn_fill against nullable-integer partner columns #753

Workflow file for this run

	name: CI

	on:
	push:
	branches: [main]
	pull_request:
	schedule:
	- cron: "0 3 * * *"
	workflow_dispatch:

	# Only a newer push to the same PR cancels its superseded run. Every other run
	# (each merge to main, the nightly schedule, manual dispatches) is grouped by
	# commit: a group keeps at most one queued run and a newer queued run replaces
	# it even without cancel-in-progress, so a per-ref group still dropped the CI of
	# back-to-back merges. Per-commit groups keep a complete result on every commit.
	concurrency:
	group: ci-${{ github.event_name }}-${{ github.event_name == 'pull_request' && github.ref \|\| github.sha }}
	cancel-in-progress: ${{ github.event_name == 'pull_request' }}

	# Least privilege by default; jobs that need more (nightly alert issue,
	# coverage-badge push) declare their own elevated permissions.
	permissions:
	contents: read

	# Dependency pinning: the gating jobs install with `-c constraints/ci.txt`
	# (exported from uv.lock), so an upstream release cannot turn CI red overnight.
	# test-matrix deliberately floats to the latest compatible releases: it is the
	# early warning for upstream breakage. Regenerate with `make constraints`.

	jobs:
	lockfile:
	runs-on: ubuntu-latest
	timeout-minutes: 10
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	- name: uv.lock and constraints/ci.txt are up to date
	run: \|
	python -m pip install "uv==0.12.10"
	uv lock --check
	uv export --frozen --no-hashes --all-extras --no-emit-project --quiet -o constraints/ci.txt
	if ! git diff --exit-code -- constraints/ci.txt; then
	echo "::error::constraints/ci.txt is stale; run 'make constraints' and commit the result"
	exit 1
	fi

	quality-fast:
	runs-on: ubuntu-latest
	timeout-minutes: 20
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -c constraints/ci.txt -e ".[dev,ml]"
	- name: Lint
	run: ruff check .
	- name: Test (required fast lane)
	run: pytest -m "not online and not large"
	- name: Typecheck
	# mypy targets Python 3.10; NumPy 2.5+ stubs require Python 3.12, so the
	# type check runs against numpy<2.5 after the tests used the locked pin.
	run: \|
	pip install "numpy<2.5"
	mypy src/freshdata

	truthbench:
	runs-on: ubuntu-latest
	timeout-minutes: 30
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -c constraints/ci.txt -e ".[dev,ml]"
	- name: TruthBench PR ratchet
	# PRs must not regress any gate that passes in the committed
	# baseline.json; the known-red gates are release blockers and are
	# enforced absolutely by the release workflow (make truthbench-release),
	# so they are reported here as KNOWN-RED without failing every
	# unrelated PR. Infrastructure errors and partial runs still fail.
	run: make truthbench-pr
	- name: Upload run artifacts
	if: always()
	uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
	with:
	name: truthbench-results
	path: benchmarks/truthbench/results/

	test-matrix:
	runs-on: ubuntu-latest
	timeout-minutes: 30
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
	include:
	- python-version: "3.9"
	pandas: "pandas>=1.5,<2"
	numpy: "numpy<2"
	- python-version: "3.13"
	pandas: "pandas"
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip
	- name: Install
	# Intentionally unpinned (no constraints file): this matrix tracks the
	# latest releases each Python version resolves to.
	run: \|
	python -m pip install --upgrade pip
	pip install -e ".[dev,ml]"
	if [ -n "${{ matrix.pandas }}" ]; then pip install "${{ matrix.pandas }}"; fi
	if [ -n "${{ matrix.numpy }}" ]; then pip install "${{ matrix.numpy }}"; fi
	- name: Test (fast marker set)
	run: pytest -m "not online and not large"

	nightly-online-large:
	if: github.event_name == 'schedule' \|\| github.event_name == 'workflow_dispatch'
	runs-on: ubuntu-latest
	timeout-minutes: 45
	# NO continue-on-error here: when this lane runs, a failure is a real
	# failure. Visibility is guaranteed by the alert step below (a pinned
	# issue), so a red nightly can't scroll by unnoticed.
	permissions:
	issues: write
	contents: read
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -c constraints/ci.txt -e ".[dev,ml]"
	- name: Nightly online/large drift checks
	# --no-cov: this lane deliberately runs ~20 tests, so the repo-wide
	# --cov-fail-under=93 inherited from addopts can never be met here.
	# The coverage gate is enforced by the full fast lane (quality-fast).
	run: pytest -m "online or large or tier1" --no-cov
	- name: Open/refresh alert issue on failure
	if: failure()
	uses: actions/github-script@3a2844b7e9c422d3c10d287c895573f7108da1b3 # v9.0.0
	with:
	script: \|
	const title = "nightly large-data lane failing";
	const body = `The scheduled online/large test lane failed.\n\n` +
	`Run: ${context.serverUrl}/${context.repo.owner}/${context.repo.repo}` +
	`/actions/runs/${context.runId}\n\n` +
	`This lane does not run on push/PR — a failure here is only ` +
	`visible through this issue and the Actions tab.`;
	const open = await github.rest.issues.listForRepo({
	...context.repo, state: "open", labels: "nightly-failure",
	});
	const existing = open.data.find(i => i.title === title);
	if (existing) {
	await github.rest.issues.createComment({
	...context.repo, issue_number: existing.number, body,
	});
	} else {
	await github.rest.issues.create({
	...context.repo, title, body, labels: ["nightly-failure"],
	});
	}

	# Runs on every push/PR: makes the existence and status of the large-data
	# lane visible where a green checkmark would otherwise hide it. Fails if the
	# large/online markers stop collecting any tests (a silently-rotted lane).
	large-data-status:
	runs-on: ubuntu-latest
	timeout-minutes: 15
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -c constraints/ci.txt -e ".[dev,ml]"
	- name: Assert the large/online lane still collects tests
	run: \|
	N=$(pytest -m "online or large or tier1" --collect-only -q -o addopts="" \
	2>/dev/null \| grep -c "::" \|\| true)
	echo "large/online/tier1 tests collected: $N"
	if [ "$N" -eq 0 ]; then
	echo "::error::the large/online test lane collects zero tests — it has rotted"
	exit 1
	fi
	{
	echo "## Large-data test lane"
	echo ""
	echo "$N large/online/tier1 test(s) exist. They do not run on this"
	echo "push/PR — they run on the nightly schedule (see the nightly-online-large"
	echo "job in scheduled runs; failures open a pinned \`nightly-failure\` issue)."
	} >> "$GITHUB_STEP_SUMMARY"

	build:
	needs: quality-fast
	runs-on: ubuntu-latest
	timeout-minutes: 10
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	- name: Build distributions
	run: \|
	python -m pip install build twine
	python -m build
	twine check dist/*

	freshcore-native:
	# Builds the optional FreshCore Rust extension (crates/freshcore) and runs
	# the FreshCore tests against it. No other job installs the extension, so
	# the native parity tests skip everywhere else.
	runs-on: ubuntu-latest
	timeout-minutes: 10
	env:
	RUSTUP_TOOLCHAIN: "1.98.1"
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install Rust toolchain
	run: rustup toolchain install "$RUSTUP_TOOLCHAIN" --profile minimal
	- name: Install
	# maturin develop installs into a virtualenv, so create one in the
	# workspace and put it first on PATH for the remaining steps.
	run: \|
	python -m venv .venv
	echo "VIRTUAL_ENV=$PWD/.venv" >> "$GITHUB_ENV"
	echo "$PWD/.venv/bin" >> "$GITHUB_PATH"
	.venv/bin/python -m pip install --upgrade pip
	.venv/bin/pip install -c constraints/ci.txt -e ".[dev,freshcore]"
	- name: Rust unit tests
	run: cargo test --locked --manifest-path crates/freshcore/Cargo.toml
	- name: Build the extension
	run: maturin develop --manifest-path crates/freshcore/Cargo.toml --features extension-module
	- name: FreshCore tests
	# The coverage gate in addopts applies to the full suite, not this subset.
	run: \|
	python -c "import freshdata_freshcore"
	pytest tests/test_execution -k freshcore -o addopts="--strict-markers" -q

	coverage-badge:
	# Publish a self-hosted shields endpoint badge to the `badges` branch
	# (no third-party account needed). Runs only on main.
	if: github.ref == 'refs/heads/main'
	needs: quality-fast
	runs-on: ubuntu-latest
	timeout-minutes: 15
	permissions:
	contents: write
	steps:
	- uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
	- uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
	with:
	python-version: "3.12"
	cache: pip
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -c constraints/ci.txt -e ".[dev,ml]"
	- name: Compute coverage and write badge JSON
	run: \|
	pytest -m "not online and not large and not tier1" \
	--cov=freshdata --cov-report=json -o addopts=""
	python - <<'PY'
	import json
	pct = round(json.load(open("coverage.json"))["totals"]["percent_covered"])
	color = ("brightgreen" if pct >= 90 else "green" if pct >= 80
	else "yellow" if pct >= 70 else "orange" if pct >= 60 else "red")
	json.dump(
	{"schemaVersion": 1, "label": "coverage", "message": f"{pct}%", "color": color},
	open("coverage.json", "w"),
	)
	print("coverage badge:", pct, "%", color)
	PY
	- name: Push badge to `badges` branch
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	mkdir -p /tmp/badges && cp coverage.json /tmp/badges/coverage.json
	cd /tmp/badges
	git init -q
	git config user.name "github-actions[bot]"
	git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
	git checkout -q -b badges
	git add coverage.json
	git commit -q -m "Update coverage badge"
	# Back-to-back merges run this job concurrently on different commits,
	# and a force push can fail transiently (ref lock, network). Retry with
	# backoff so a badge update never turns main red.
	for attempt in 1 2 3 4; do
	if git push -q --force \
	"https://x-access-token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git" badges; then
	exit 0
	fi
	echo "badge push attempt ${attempt} failed; retrying"
	sleep $((attempt * 10))
	done
	echo "::warning::coverage badge push failed after 4 attempts"
	exit 1

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test(missing): pin _knn_fill against nullable-integer partner columns #753

Workflow file

test(missing): pin _knn_fill against nullable-integer partner columns #753

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Workflow file for this run