Skip to content

Add example data for antibody-antigen docking models use case #553

Description

@gcroci2
  • Ask A. Bonvin for data (or at least samples of them)
    • They are in the process of publishing another study/dataset. They are also working on these systems and plan to generate a larger dataset.
    • Evaluate if the complete dataset, which we don't need yet in this phase, can be used for a future phase of the project, i.e., running a satisfying training for a relevant research question
  • Upload an example dataset somewhere accessible (e.g., Zenodo)
  • For ranking the models
  • https://data.sbgrid.org/dataset/686/
    • Chat with Cunliang
      • They seem to be 2 chains-things. What's the difference with PPIs we have and why we can't support already such complexes?
      • Where are the native structures?
      • Are 16 complexes enough to train a DL model?
      • Brainstorm about the use case
    • What about infrastructure for this?

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    discDiscussion needed, to better define the task/sneeds infomore information is neededstaleissue not touched from too much time

    Type

    No type

    Projects

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions