From c6abb97f34a9fbacba1a6d52b2e2eb1cd209e427 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 30 Jul 2026 09:35:41 -0600 Subject: [PATCH 01/13] close quotes on code chunk --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index b936c5d..5ba0a39 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,7 @@ To install all the packages in the ``` r pak::pkg_install("doi-nps/NPSdataverse") #alternatively: -remotes::install_github("doi-nps/NPSdataverse) +remotes::install_github("doi-nps/NPSdataverse"") ``` ## Workflow outline @@ -61,7 +61,7 @@ accompanying documentation includes information on: 5) Uploading a completed data package to DataStore Please *DO NOT ACTIVATE* the DataStore reference: prior to activation, -data packages need to be reviewed via a yet-to-be-created process. +data packages need to be reviewed. Use ## Accessing the EML creation script From 3fc64fe697a97407ee6ee09a5fe51a61a0f79b02 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 30 Jul 2026 09:39:38 -0600 Subject: [PATCH 02/13] Add link to data package review checklist --- README.md | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 5ba0a39..8124678 100644 --- a/README.md +++ b/README.md @@ -45,23 +45,24 @@ remotes::install_github("doi-nps/NPSdataverse"") EMLeditor comes with a template Rmarkdown script that you can edit to generate a fully fledged EML document. The script includes and -accompanying documentation includes information on: +accompanying documentation includes information to: -1) Generating an initial EML document using the R/EMLassemblyline +1) Generate an initial EML document using the R/EMLassemblyline package functions -2) Adding in NPS specific and DataStore specific EML elements using the +2) Add NPS specific and DataStore specific EML elements using the R/EMLeditor package functions -3) Generating a draft data package reference on DataStore and - incorporating DOIs into the metadata -4) Checking the EML document to make sure it is schema-valid and passes +3) Generate a draft data package reference on DataStore and + incorporate DOIs into the metadata +4) Check the EML document to make sure it is schema-valid and passes all the necessary tests for uploading to DataStore (using the `run_congruence_checks()` function from the [DPchecker](https://doi-nps.github.io/DPchecker/) package) -5) Uploading a completed data package to DataStore +5) Upload a completed data package to DataStore Please *DO NOT ACTIVATE* the DataStore reference: prior to activation, -data packages need to be reviewed. Use +data packages need to be reviewed. Use the [Data Package Review Checklist](https://irma.nps.gov/DataStore/Reference/Profile/2306391?Inv=TRUE) +to complete the review. ## Accessing the EML creation script @@ -77,10 +78,9 @@ template,”Editable_EML_Creation_Workflow {EMLeditor}” then click “OK”. If you use EMLeditor functions to alter your metadata (e.g. “set” class functions) they will also silently add the National Park Service as a publisher (including location, [ROR id](https://ror.org/), etc) to your -metadata unless you set NPS=FALSE. If you leave the default setting as -NPS=TRUE, EMLeditor will also assume the data package is being created +metadata unless you set `NPS=FALSE`. If you leave the default setting as +`NPS=TRUE`, EMLeditor will also assume the data package is being created “by or for the NPS” and add that information to the metadata. EMLeditor will also add information about the version of EMLeditor you -used to edit your metadata (for instance if you used “set” class -functions). +used to edit your metadata when you use “set” class functions. From 3ffbc7f9a957e05926345c769b8d47e4927acb1e Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 30 Jul 2026 09:45:31 -0600 Subject: [PATCH 03/13] update readme.rmd --- README.Rmd | 49 ++++++++++++++++++++++++++++++++++--------------- 1 file changed, 34 insertions(+), 15 deletions(-) diff --git a/README.Rmd b/README.Rmd index 183171c..4a313c0 100644 --- a/README.Rmd +++ b/README.Rmd @@ -19,7 +19,6 @@ knitr::opts_chunk$set( [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) [![R-CMD-check](https://github.com/DOI-NPS/EMLeditor/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/DOI-NPS/EMLeditor/actions/workflows/R-CMD-check.yaml) -[![Codecov test coverage](https://codecov.io/gh/DOI-NPS/EMLeditor/graph/badge.svg)](https://app.codecov.io/gh/DOI-NPS/EMLeditor) # EMLeditor @@ -30,30 +29,48 @@ The goal of EMLeditor is to edit EML-formatted xml files. Specifically, EMLedito ## Installation and updates -You can install and update the development version of EMLeditor from [GitHub](https://github.com/) with: +You can install and update the development version of EMLeditor from +[GitHub](https://github.com/) with: ``` r # install.packages("pak") -pak::pkg_install("nationalparkservice/EMLeditor") +pak::pkg_install("doi-nps/EMLeditor") + +# alternatively: +remotes::install_github("doi-nps/eMLeditor") ``` -To install all the packages in the [NPSdataverse](https://github.com/nationalparkservice/NPSdataverse) (including EMLeditor): +To install all the packages in the +[NPSdataverse](https://github.com/doi-nps/NPSdataverse) +(including EMLeditor): ``` r -pak::pkg_install("nationalparkservice/NPSdataverse") +pak::pkg_install("doi-nps/NPSdataverse") +#alternatively: +remotes::install_github("doi-nps/NPSdataverse"") ``` ## Workflow outline -EMLeditor comes with a template Rmarkdown script that you can edit to generate a fully fledged EML document. The script includes and accompanying documentation includes information on: - -1) Generating an initial EML document using the R/EMLassemblyline package functions -2) Adding in NPS specific and DataStore specific EML elements using the R/EMLeditor package functions -3) Generating a draft data package reference on DataStore and incorporating DOIs into the metadata -4) Checking the EML document to make sure it is schema-valid and passes all the necessary tests for uploading to DataStore (using the `run_congruence_checks()` function from the [DPchecker](https://nationalparkservice.github.io/DPchecker/) package) -5) Uploading a completed data package to DataStore - -Please *DO NOT ACTIVATE* the DataStore reference: prior to activation, data packages need to be reviewed via a yet-to-be-created process. +EMLeditor comes with a template Rmarkdown script that you can edit to +generate a fully fledged EML document. The script includes and +accompanying documentation includes information to: + +1) Generate an initial EML document using the R/EMLassemblyline + package functions +2) Add NPS specific and DataStore specific EML elements using the + R/EMLeditor package functions +3) Generate a draft data package reference on DataStore and + incorporate DOIs into the metadata +4) Check the EML document to make sure it is schema-valid and passes + all the necessary tests for uploading to DataStore (using the + `run_congruence_checks()` function from the + [DPchecker](https://doi-nps.github.io/DPchecker/) + package) +5) Upload a completed data package to DataStore + +Please *DO NOT ACTIVATE* the DataStore reference: prior to activation, +data packages need to be reviewed. Use the [Data Package Review Checklist](https://irma.nps.gov/DataStore/Reference/Profile/2306391?Inv=TRUE) to complete the review. ## Accessing the EML creation script @@ -63,4 +80,6 @@ To access the EML creation script from within EMLeditor, install (or update) the If you use EMLeditor functions to alter your metadata (e.g. "set" class functions) they will also silently add the National Park Service as a publisher (including location, [ROR id](https://ror.org/), etc) to your metadata unless you set NPS=FALSE. If you leave the default setting as NPS=TRUE, EMLeditor will also assume the data package is being created "by or for the NPS" and add that information to the metadata. -EMLeditor will also add information about the version of EMLeditor you used to edit your metadata (for instance if you used "set" class functions). +EMLeditor will also add information about the version of EMLeditor you +used to edit your metadata when you use “set” class functions. + From 861d32ea31958f8e9c199d00198c627efe912022 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 30 Jul 2026 09:45:59 -0600 Subject: [PATCH 04/13] built with devtools::build_readme --- README.md | 25 +++++++++++++------------ 1 file changed, 13 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 8124678..2c3d317 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,11 @@ + [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental) -[![R-CMD-check](https://github.com/doi-nps/EMLeditor/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/doi-nps/EMLeditor/actions/workflows/R-CMD-check.yaml) +[![R-CMD-check](https://github.com/DOI-NPS/EMLeditor/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/DOI-NPS/EMLeditor/actions/workflows/R-CMD-check.yaml) # EMLeditor @@ -32,8 +33,8 @@ remotes::install_github("doi-nps/eMLeditor") ``` To install all the packages in the -[NPSdataverse](https://github.com/doi-nps/NPSdataverse) -(including EMLeditor): +[NPSdataverse](https://github.com/doi-nps/NPSdataverse) (including +EMLeditor): ``` r pak::pkg_install("doi-nps/NPSdataverse") @@ -47,21 +48,21 @@ EMLeditor comes with a template Rmarkdown script that you can edit to generate a fully fledged EML document. The script includes and accompanying documentation includes information to: -1) Generate an initial EML document using the R/EMLassemblyline - package functions +1) Generate an initial EML document using the R/EMLassemblyline package + functions 2) Add NPS specific and DataStore specific EML elements using the R/EMLeditor package functions -3) Generate a draft data package reference on DataStore and - incorporate DOIs into the metadata +3) Generate a draft data package reference on DataStore and incorporate + DOIs into the metadata 4) Check the EML document to make sure it is schema-valid and passes all the necessary tests for uploading to DataStore (using the `run_congruence_checks()` function from the - [DPchecker](https://doi-nps.github.io/DPchecker/) - package) + [DPchecker](https://doi-nps.github.io/DPchecker/) package) 5) Upload a completed data package to DataStore Please *DO NOT ACTIVATE* the DataStore reference: prior to activation, -data packages need to be reviewed. Use the [Data Package Review Checklist](https://irma.nps.gov/DataStore/Reference/Profile/2306391?Inv=TRUE) +data packages need to be reviewed. Use the [Data Package Review +Checklist](https://irma.nps.gov/DataStore/Reference/Profile/2306391?Inv=TRUE) to complete the review. ## Accessing the EML creation script @@ -78,8 +79,8 @@ template,”Editable_EML_Creation_Workflow {EMLeditor}” then click “OK”. If you use EMLeditor functions to alter your metadata (e.g. “set” class functions) they will also silently add the National Park Service as a publisher (including location, [ROR id](https://ror.org/), etc) to your -metadata unless you set `NPS=FALSE`. If you leave the default setting as -`NPS=TRUE`, EMLeditor will also assume the data package is being created +metadata unless you set NPS=FALSE. If you leave the default setting as +NPS=TRUE, EMLeditor will also assume the data package is being created “by or for the NPS” and add that information to the metadata. EMLeditor will also add information about the version of EMLeditor you From 835e0a4aef92556e42d31382c0245f3d7e4857a2 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Thu, 30 Jul 2026 10:03:58 -0600 Subject: [PATCH 05/13] updated via pkgdown::build_site_github_pages --- docs/404.html | 6 ++-- docs/CONTRIBUTING.html | 6 ++-- docs/LICENSE-text.html | 4 +-- docs/LICENSE.html | 4 +-- docs/articles/a01_prereqs.html | 8 ++--- docs/articles/a02_EML_creation_script.html | 34 +++++++++++----------- docs/articles/a03_Template_edits.html | 6 ++-- docs/articles/index.html | 4 +-- docs/authors.html | 4 +-- docs/index.html | 30 +++++++++---------- docs/pkgdown.yml | 4 +-- docs/reference/EMLeditor-package.html | 4 +-- docs/reference/get_abstract.html | 4 +-- docs/reference/get_additional_info.html | 4 +-- docs/reference/get_author_list.html | 4 +-- docs/reference/get_begin_date.html | 4 +-- docs/reference/get_citation.html | 4 +-- docs/reference/get_content_units.html | 4 +-- docs/reference/get_cui.html | 4 +-- docs/reference/get_cui_code.html | 4 +-- docs/reference/get_cui_marking.html | 4 +-- docs/reference/get_doi.html | 4 +-- docs/reference/get_drr_doi.html | 4 +-- docs/reference/get_drr_title.html | 4 +-- docs/reference/get_ds_id.html | 4 +-- docs/reference/get_end_date.html | 4 +-- docs/reference/get_file_info.html | 4 +-- docs/reference/get_lit.html | 4 +-- docs/reference/get_methods.html | 4 +-- docs/reference/get_producing_units.html | 4 +-- docs/reference/get_publisher.html | 4 +-- docs/reference/get_title.html | 4 +-- docs/reference/index.html | 4 +-- docs/reference/remove_datastore_files.html | 4 +-- docs/reference/set_abstract.html | 4 +-- docs/reference/set_additional_info.html | 4 +-- docs/reference/set_content_units.html | 4 +-- docs/reference/set_creator_orcids.html | 4 +-- docs/reference/set_creator_order.html | 4 +-- docs/reference/set_creator_orgs.html | 4 +-- docs/reference/set_cui.html | 4 +-- docs/reference/set_cui_code.html | 4 +-- docs/reference/set_cui_marking.html | 4 +-- docs/reference/set_data_urls.html | 4 +-- docs/reference/set_datastore_doi.html | 4 +-- docs/reference/set_doi.html | 4 +-- docs/reference/set_drr.html | 4 +-- docs/reference/set_int_rights.html | 4 +-- docs/reference/set_language.html | 4 +-- docs/reference/set_lit.html | 4 +-- docs/reference/set_methods.html | 4 +-- docs/reference/set_missing_data.html | 4 +-- docs/reference/set_new_creator.html | 4 +-- docs/reference/set_producing_units.html | 4 +-- docs/reference/set_project.html | 4 +-- docs/reference/set_protocol.html | 4 +-- docs/reference/set_publisher.html | 4 +-- docs/reference/set_title.html | 4 +-- docs/reference/upload_data_package.html | 8 ++--- docs/reference/write_readme.html | 4 +-- 60 files changed, 155 insertions(+), 155 deletions(-) diff --git a/docs/404.html b/docs/404.html index 2750a18..12f28ee 100644 --- a/docs/404.html +++ b/docs/404.html @@ -7,8 +7,8 @@ Page not found (404) • EMLeditor - - + + @@ -71,7 +71,7 @@

Page not found (404)

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index c8a1d71..8c55cd2 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -1,5 +1,5 @@ -Contributing to CONTRIBUTING.md • EMLeditor +Contributing to CONTRIBUTING.md • EMLeditor Skip to contents @@ -134,7 +134,7 @@

How Do I Submit a Good En

Your First Code Contribution

-

If you would like to contribute code please make the adjustments and issue a pull request. The development team will review your code prior to merging and pull request. Before issuing a pull request make sure: 1) You have added a description of any changes made to the changelog in NEWS.md 2) If you have added a function, make sure you also include unit tests that cover the function. If you have changed a function, make sure the unit tests still pass. 3) If you have added or changed a function, make sure that the package loads using devtools::load_all(). 2) You have updated any necessary documentation using devtools::document() 3) You have updated the associated web pages using pkgdown::build_site_github_pages() 4) You have checked that there are no errors or warnings when the package is built using devtools::check().

+

If you would like to contribute code please make the adjustments and issue a pull request. The development team will review your code prior to merging and pull request. Before issuing a pull request make sure: 1) You have added a description of any changes made to the changelog in NEWS.md 2) If you have added a function, make sure you also include unit tests that cover the function. If you have changed a function, make sure the unit tests still pass. 3) If you have added or changed a function, make sure that the package loads using devtools::load_all(). 2) You have updated any necessary documentation using devtools::document() 3) You have updated the associated web pages using pkgdown::build_site_github_pages() 4) You have checked that there are no errors or warnings when the package is built using devtools::check().

@@ -160,7 +160,7 @@

Attribution -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 9667ba0..3788e3e 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -1,5 +1,5 @@ -License • EMLeditor +License • EMLeditor Skip to contents @@ -52,7 +52,7 @@

License

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/LICENSE.html b/docs/LICENSE.html index d6b3619..d38ac8f 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -1,5 +1,5 @@ -MIT License • EMLeditor +MIT License • EMLeditor Skip to contents @@ -56,7 +56,7 @@

MIT License

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/articles/a01_prereqs.html b/docs/articles/a01_prereqs.html index 5cf61c4..2e8b0a4 100644 --- a/docs/articles/a01_prereqs.html +++ b/docs/articles/a01_prereqs.html @@ -7,8 +7,8 @@ Pre-Requisites • EMLeditor - - + + @@ -103,7 +103,7 @@

Softwareinstall.packages(c("remotes", "tidyverse")) #the NPSdataverse includes EMLassemblyline, EMLeditor, and several other useful packages: -remotes::install_github("doi-nps/NPSdataverse") +remotes::install_github("doi-nps/NPSdataverse") library(tidyverse) library(NPSdataverse) @@ -141,7 +141,7 @@

A text editor -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/articles/a02_EML_creation_script.html b/docs/articles/a02_EML_creation_script.html index 38abcb2..941efbe 100644 --- a/docs/articles/a02_EML_creation_script.html +++ b/docs/articles/a02_EML_creation_script.html @@ -7,8 +7,8 @@ EML Creation Script • EMLeditor - - + + @@ -125,7 +125,7 @@

Install and Load R Packages
 #install packages
 install.packages(c("remotes", "tidyverse"))
-remotes::install_github("doi-nps/NPSdataverse")
+remotes::install_github("doi-nps/NPSdataverse") 
 # When loading packages, you may be advised to update to more recent versions
 # of dependent packages. Most of these updates likely are not critical.  
@@ -277,8 +277,8 @@ 
Temporal information
-startdate <- ymd("2010-01-26")
-enddate <- ymd("2013-01-04")
+startdate <- ymd("2010-01-26") +enddate <- ymd("2013-01-04")
@@ -331,7 +331,7 @@

FUNCTION 1 - Core Metadata Infor using EMLeditor::set_int_rights(). There is no need to edit this .txt file.

-EMLassemblyline::template_core_metadata(path = working_folder, 
+EMLassemblyline::template_core_metadata(path = working_folder, 
                        license = "CC0") # that '0' is a zero!

@@ -347,7 +347,7 @@

FUNCTION 2 - Data Table Attributes 
-EMLassemblyline::template_table_attributes(path = working_folder, 
+EMLassemblyline::template_table_attributes(path = working_folder, 
                           data.table = data_files, 
                           write.file = TRUE)

@@ -367,7 +367,7 @@

FUNCTION 3 - Data Table Ca these files already exist from a previous run, they are not overwritten.

-EMLassemblyline::template_categorical_variables(path = working_folder, 
+EMLassemblyline::template_categorical_variables(path = working_folder, 
                                data.path = working_folder, 
                                write.file = TRUE)
@@ -387,7 +387,7 @@

FUNCTION 4 - Geographic CoverageQCkit for R functions that will convert UTM to lat/long).

-EMLassemblyline::template_geographic_coverage(path = working_folder, 
+EMLassemblyline::template_geographic_coverage(path = working_folder, 
                              data.path = working_folder,
                              data.table = data_coordinates_table, 
                              lat.col = data_latitude, 
@@ -404,7 +404,7 @@ 
FUNCTION 5 - Taxonomic Coverage
 
-EMLassemblyline::template_taxonomic_coverage(path = working_folder, 
+EMLassemblyline::template_taxonomic_coverage(path = working_folder, 
                             data.path = working_folder, 
                             taxa.table = data_taxa_tables,
                             taxa.col = data_taxa_fields, 
@@ -423,7 +423,7 @@ 
Create an EML object
-my_metadata <- EMLassemblyline::make_eml(path = working_folder,
+my_metadata <- EMLassemblyline::make_eml(path = working_folder,
                dataset.title = package_title,
                data.table = data_files,
                data.table.name = data_names,
@@ -440,7 +440,7 @@ 
Check for EML validity
 
This is a good point to pause and test whether your EML is valid.

 
-EML::eml_validate(my_metadata)

+EML::eml_validate(my_metadata)

 
if your EML is valid you should see the following (admittedly
 cryptic) result:

 
# [1] TRUE
@@ -656,7 +656,7 @@ 
Validate your EML
-EML::eml_validate(my_metadata)
+EML::eml_validate(my_metadata)

if your EML is valid you should see the following (admittedly crypitic):

# [1] TRUE
@@ -674,7 +674,7 @@ 
Write your EML to an xml file
-EML::write_eml(my_metadata, "mymetadatafilename_metadata.xml")

+EML::write_eml(my_metadata, "mymetadatafilename_metadata.xml")

Check your .xml file @@ -684,7 +684,7 @@

Check your .xml file
 # This assumes that you have written your metadata to an .xml file and that the .xml file is in the current working directory.
-DPchecker::run_congruence_checks(check_metadata_only = TRUE)
+DPchecker::run_congruence_checks(check_metadata_only = TRUE)
 
 # If you .xml file with metadata is in a different directory, you will have to specify that:
 # DPchecker::run_congruence_checks("C:/Users/<yourusername>/Documents/my_data_package", check_metadata_only = TRUE)

@@ -700,7 +700,7 @@

Check your data package 
 # this assumes that the data package is the working directory
-DPchecker::run_congruence_checks()
+DPchecker::run_congruence_checks()
 
 # if your data package is somewhere else, specify that:
 # DPchecker::run_congruence_checks("C:/Users/<yourusername>/Documents/my_data_package")
@@ -743,7 +743,7 @@

Upload your data package
-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/articles/a03_Template_edits.html b/docs/articles/a03_Template_edits.html index 7516b66..d0143a8 100644 --- a/docs/articles/a03_Template_edits.html +++ b/docs/articles/a03_Template_edits.html @@ -7,8 +7,8 @@ Editing .txt Files • EMLeditor - - + + additional_info
-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/articles/index.html b/docs/articles/index.html index b104231..b426b5b 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -1,5 +1,5 @@ -Articles • EMLeditor +Articles • EMLeditor Skip to contents @@ -62,7 +62,7 @@

All vignettes

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/authors.html b/docs/authors.html index a7c051c..78f4be2 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • EMLeditor +Authors and Citation • EMLeditor Skip to contents @@ -86,7 +86,7 @@

Citation

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/index.html b/docs/index.html index 71694c0..779862a 100644 --- a/docs/index.html +++ b/docs/index.html @@ -7,8 +7,8 @@ View and Edit EML Metadata • EMLeditor - - + + @@ -71,27 +71,27 @@

Installation and updatesYou can install and update the development version of EMLeditor from GitHub with:

 # install.packages("pak")
-pak::pkg_install("doi-nps/EMLeditor")
+pak::pkg_install("doi-nps/EMLeditor")
 
 # alternatively:
-remotes::install_github("doi-nps/eMLeditor")
+remotes::install_github("doi-nps/eMLeditor")

To install all the packages in the NPSdataverse (including EMLeditor):

pak::pkg_install("doi-nps/NPSdataverse")
 #alternatively:
-remotes::install_github("doi-nps/NPSdataverse)
+remotes::install_github("doi-nps/NPSdataverse"")

Workflow outline

-

EMLeditor comes with a template Rmarkdown script that you can edit to generate a fully fledged EML document. The script includes and accompanying documentation includes information on:

+

EMLeditor comes with a template Rmarkdown script that you can edit to generate a fully fledged EML document. The script includes and accompanying documentation includes information to:

    -
  1. Generating an initial EML document using the R/EMLassemblyline package functions
    2. -
  2. Adding in NPS specific and DataStore specific EML elements using the R/EMLeditor package functions
    3. -
  3. Generating a draft data package reference on DataStore and incorporating DOIs into the metadata
    4. -
  4. Checking the EML document to make sure it is schema-valid and passes all the necessary tests for uploading to DataStore (using the run_congruence_checks() function from the DPchecker package)
    5. -
  5. Uploading a completed data package to DataStore
    6. +
  6. Generate an initial EML document using the R/EMLassemblyline package functions
    7. +
  7. Add NPS specific and DataStore specific EML elements using the R/EMLeditor package functions
    8. +
  8. Generate a draft data package reference on DataStore and incorporate DOIs into the metadata
    9. +
  9. Check the EML document to make sure it is schema-valid and passes all the necessary tests for uploading to DataStore (using the run_congruence_checks() function from the DPchecker package)
    10. +
  10. Upload a completed data package to DataStore
-

Please DO NOT ACTIVATE the DataStore reference: prior to activation, data packages need to be reviewed via a yet-to-be-created process.

+

Please DO NOT ACTIVATE the DataStore reference: prior to activation, data packages need to be reviewed. Use the Data Package Review Checklist to complete the review.

Accessing the EML creation script @@ -102,7 +102,7 @@

Accessing the EML creation scriptAdditional considerations

If you use EMLeditor functions to alter your metadata (e.g. “set” class functions) they will also silently add the National Park Service as a publisher (including location, ROR id, etc) to your metadata unless you set NPS=FALSE. If you leave the default setting as NPS=TRUE, EMLeditor will also assume the data package is being created “by or for the NPS” and add that information to the metadata.

-

EMLeditor will also add information about the version of EMLeditor you used to edit your metadata (for instance if you used “set” class functions).

+

EMLeditor will also add information about the version of EMLeditor you used to edit your metadata when you use “set” class functions.

@@ -149,7 +149,7 @@

Developers

Dev status

  • Lifecycle: experimental
    • -
  • R-CMD-check
    • +
  • R-CMD-check
@@ -162,7 +162,7 @@

Dev status

-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index e454acb..8008c9b 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,5 +1,5 @@ pandoc: 3.6.3 -pkgdown: 2.2.0 +pkgdown: 2.2.1 pkgdown_sha: ~ articles: a01_prereqs: a01_prereqs.html @@ -7,7 +7,7 @@ articles: a03_Template_edits: a03_Template_edits.html a04_Editing_fixing_eml: a04_Editing_fixing_eml.html a05_advanced_functionality: a05_advanced_functionality.html -last_built: 2026-07-09T19:39Z +last_built: 2026-07-30T15:46Z urls: reference: https://doi-nps.github.io/EMLeditor/reference article: https://doi-nps.github.io/EMLeditor/articles diff --git a/docs/reference/EMLeditor-package.html b/docs/reference/EMLeditor-package.html index 2cceb6c..ba9d38e 100644 --- a/docs/reference/EMLeditor-package.html +++ b/docs/reference/EMLeditor-package.html @@ -1,5 +1,5 @@ -EMLeditor: View and Edit EML Metadata — EMLeditor-package • EMLeditor +EMLeditor: View and Edit EML Metadata — EMLeditor-package • EMLeditor Skip to contents @@ -70,7 +70,7 @@

Author<
-

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_abstract.html b/docs/reference/get_abstract.html index 96cb2ae..e9efac1 100644 --- a/docs/reference/get_abstract.html +++ b/docs/reference/get_abstract.html @@ -1,5 +1,5 @@ -returns the abstract — get_abstract • EMLeditor +returns the abstract — get_abstract • EMLeditor Skip to contents @@ -84,7 +84,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_additional_info.html b/docs/reference/get_additional_info.html index 8a48875..4935404 100644 --- a/docs/reference/get_additional_info.html +++ b/docs/reference/get_additional_info.html @@ -1,5 +1,5 @@ -Get additional information (Notes on DataStore) — get_additional_info • EMLeditor +Get additional information (Notes on DataStore) — get_additional_info • EMLeditor Skip to contents @@ -79,7 +79,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_author_list.html b/docs/reference/get_author_list.html index f608465..a0e931c 100644 --- a/docs/reference/get_author_list.html +++ b/docs/reference/get_author_list.html @@ -1,5 +1,5 @@ -returns the authors — get_author_list • EMLeditor +returns the authors — get_author_list • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_begin_date.html b/docs/reference/get_begin_date.html index f5f9c6e..59f4c73 100644 --- a/docs/reference/get_begin_date.html +++ b/docs/reference/get_begin_date.html @@ -1,5 +1,5 @@ -returns the first date — get_begin_date • EMLeditor +returns the first date — get_begin_date • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_citation.html b/docs/reference/get_citation.html index d33b269..7129353 100644 --- a/docs/reference/get_citation.html +++ b/docs/reference/get_citation.html @@ -1,5 +1,5 @@ -returns the data package citation — get_citation • EMLeditor +returns the data package citation — get_citation • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_content_units.html b/docs/reference/get_content_units.html index a63610a..293b41e 100644 --- a/docs/reference/get_content_units.html +++ b/docs/reference/get_content_units.html @@ -1,5 +1,5 @@ -returns the park unit connections — get_content_units • EMLeditor +returns the park unit connections — get_content_units • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_cui.html b/docs/reference/get_cui.html index 0dc360e..3af2fd9 100644 --- a/docs/reference/get_cui.html +++ b/docs/reference/get_cui.html @@ -1,5 +1,5 @@ -returns a CUI statement — get_cui • EMLeditorreturns a CUI statement — get_cui • EMLeditor Skip to contents @@ -86,7 +86,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_cui_code.html b/docs/reference/get_cui_code.html index 0ac5bfb..68dff6f 100644 --- a/docs/reference/get_cui_code.html +++ b/docs/reference/get_cui_code.html @@ -1,5 +1,5 @@ -returns a CUI dissemination code statement — get_cui_code • EMLeditor +returns a CUI dissemination code statement — get_cui_code • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_cui_marking.html b/docs/reference/get_cui_marking.html index c77b67e..b3ce64d 100644 --- a/docs/reference/get_cui_marking.html +++ b/docs/reference/get_cui_marking.html @@ -1,5 +1,5 @@ -Returns the CUI marking — get_cui_marking • EMLeditor +Returns the CUI marking — get_cui_marking • EMLeditor Skip to contents @@ -84,7 +84,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_doi.html b/docs/reference/get_doi.html index 282a9a0..8279eb8 100644 --- a/docs/reference/get_doi.html +++ b/docs/reference/get_doi.html @@ -1,5 +1,5 @@ -returns the DOI — get_doi • EMLeditor +returns the DOI — get_doi • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_drr_doi.html b/docs/reference/get_drr_doi.html index 2dfcc1a..f35d663 100644 --- a/docs/reference/get_drr_doi.html +++ b/docs/reference/get_drr_doi.html @@ -1,5 +1,5 @@ -returns the DOI of the associated DRR — get_drr_doi • EMLeditor +returns the DOI of the associated DRR — get_drr_doi • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_drr_title.html b/docs/reference/get_drr_title.html index e6ae141..473182a 100644 --- a/docs/reference/get_drr_title.html +++ b/docs/reference/get_drr_title.html @@ -1,5 +1,5 @@ -returns the title of the associated DRR — get_drr_title • EMLeditor +returns the title of the associated DRR — get_drr_title • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_ds_id.html b/docs/reference/get_ds_id.html index fa87c01..3e40cfb 100644 --- a/docs/reference/get_ds_id.html +++ b/docs/reference/get_ds_id.html @@ -1,5 +1,5 @@ -returns the DataStore Reference ID — get_ds_id • EMLeditor +returns the DataStore Reference ID — get_ds_id • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_end_date.html b/docs/reference/get_end_date.html index b3a7f6d..5bbbabb 100644 --- a/docs/reference/get_end_date.html +++ b/docs/reference/get_end_date.html @@ -1,5 +1,5 @@ -returns the last date — get_end_date • EMLeditor +returns the last date — get_end_date • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_file_info.html b/docs/reference/get_file_info.html index db8b281..87a190a 100644 --- a/docs/reference/get_file_info.html +++ b/docs/reference/get_file_info.html @@ -1,5 +1,5 @@ -displays file names, sizes, and descriptions — get_file_info • EMLeditor +displays file names, sizes, and descriptions — get_file_info • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_lit.html b/docs/reference/get_lit.html index 7829d02..34c2f56 100644 --- a/docs/reference/get_lit.html +++ b/docs/reference/get_lit.html @@ -1,5 +1,5 @@ -Get literature cited — get_lit • EMLeditor +Get literature cited — get_lit • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_methods.html b/docs/reference/get_methods.html index 544b280..c1fb2f8 100644 --- a/docs/reference/get_methods.html +++ b/docs/reference/get_methods.html @@ -1,5 +1,5 @@ -Get methods — get_methods • EMLeditor +Get methods — get_methods • EMLeditor Skip to contents @@ -81,7 +81,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_producing_units.html b/docs/reference/get_producing_units.html index 9baa3c0..9019dea 100644 --- a/docs/reference/get_producing_units.html +++ b/docs/reference/get_producing_units.html @@ -1,5 +1,5 @@ -Returns the Producing Units — get_producing_units • EMLeditor +Returns the Producing Units — get_producing_units • EMLeditor Skip to contents @@ -79,7 +79,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_publisher.html b/docs/reference/get_publisher.html index 6a6d3e3..41366fc 100644 --- a/docs/reference/get_publisher.html +++ b/docs/reference/get_publisher.html @@ -1,5 +1,5 @@ -Returns the publisher information — get_publisher • EMLeditor +Returns the publisher information — get_publisher • EMLeditor Skip to contents @@ -79,7 +79,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/get_title.html b/docs/reference/get_title.html index ad6abd9..cffe26c 100644 --- a/docs/reference/get_title.html +++ b/docs/reference/get_title.html @@ -1,5 +1,5 @@ -returns the data package title — get_title • EMLeditor +returns the data package title — get_title • EMLeditor Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/index.html b/docs/reference/index.html index 27d4950..03c20f6 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -1,5 +1,5 @@ -Package index • EMLeditor +Package index • EMLeditor Skip to contents @@ -428,7 +428,7 @@

All functions -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/remove_datastore_files.html b/docs/reference/remove_datastore_files.html index daa3a18..0d6ccae 100644 --- a/docs/reference/remove_datastore_files.html +++ b/docs/reference/remove_datastore_files.html @@ -1,5 +1,5 @@ -Remove files from a data package Reference on DataStore — remove_datastore_files • EMLeditorRemove files from a data package Reference on DataStore — remove_datastore_files • EMLeditorExamples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_abstract.html b/docs/reference/set_abstract.html index 47146fc..269972c 100644 --- a/docs/reference/set_abstract.html +++ b/docs/reference/set_abstract.html @@ -1,5 +1,5 @@ -adds an abstract — set_abstract • EMLeditor +adds an abstract — set_abstract • EMLeditor Skip to contents @@ -95,7 +95,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_additional_info.html b/docs/reference/set_additional_info.html index ab46dca..4d232a7 100644 --- a/docs/reference/set_additional_info.html +++ b/docs/reference/set_additional_info.html @@ -1,5 +1,5 @@ -Set Notes for DataStore landing page — set_additional_info • EMLeditor +Set Notes for DataStore landing page — set_additional_info • EMLeditor Skip to contents @@ -97,7 +97,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_content_units.html b/docs/reference/set_content_units.html index 58698d1..6f84a89 100644 --- a/docs/reference/set_content_units.html +++ b/docs/reference/set_content_units.html @@ -1,5 +1,5 @@ -Add Park Unit Connections to metadata — set_content_units • EMLeditor +Add Park Unit Connections to metadata — set_content_units • EMLeditor Skip to contents @@ -96,7 +96,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_creator_orcids.html b/docs/reference/set_creator_orcids.html index 4dd6160..9b26f00 100644 --- a/docs/reference/set_creator_orcids.html +++ b/docs/reference/set_creator_orcids.html @@ -1,5 +1,5 @@ -Allows user to add ORCids to the creator — set_creator_orcids • EMLeditor +Allows user to add ORCids to the creator — set_creator_orcids • EMLeditor Skip to contents @@ -100,7 +100,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_creator_order.html b/docs/reference/set_creator_order.html index 3e97004..4a1da0c 100644 --- a/docs/reference/set_creator_order.html +++ b/docs/reference/set_creator_order.html @@ -1,5 +1,5 @@ -Rearrange the order of creators (authors) — set_creator_order • EMLeditor +Rearrange the order of creators (authors) — set_creator_order • EMLeditor Skip to contents @@ -103,7 +103,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_creator_orgs.html b/docs/reference/set_creator_orgs.html index 35d16da..a27c24f 100644 --- a/docs/reference/set_creator_orgs.html +++ b/docs/reference/set_creator_orgs.html @@ -1,5 +1,5 @@ -Add an organization as a creator to metadata (author in DataStore) — set_creator_orgs • EMLeditor +Add an organization as a creator to metadata (author in DataStore) — set_creator_orgs • EMLeditor Skip to contents @@ -127,7 +127,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_cui.html b/docs/reference/set_cui.html index f73e8d6..6709315 100644 --- a/docs/reference/set_cui.html +++ b/docs/reference/set_cui.html @@ -1,5 +1,5 @@ -Adds CUI to metadata — set_cui • EMLeditorAdds CUI to metadata — set_cui • EMLeditor Skip to contents @@ -108,7 +108,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_cui_code.html b/docs/reference/set_cui_code.html index c1e10cd..d8fe89c 100644 --- a/docs/reference/set_cui_code.html +++ b/docs/reference/set_cui_code.html @@ -1,5 +1,5 @@ -Adds CUI dissemination codes to metadata — set_cui_code • EMLeditor +Adds CUI dissemination codes to metadata — set_cui_code • EMLeditor Skip to contents @@ -106,7 +106,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_cui_marking.html b/docs/reference/set_cui_marking.html index 0930e8b..18615c5 100644 --- a/docs/reference/set_cui_marking.html +++ b/docs/reference/set_cui_marking.html @@ -1,5 +1,5 @@ -The function sets the CUI marking for the data package — set_cui_marking • EMLeditorThe function sets the CUI marking for the data package — set_cui_marking • EMLeditorExamples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_data_urls.html b/docs/reference/set_data_urls.html index 234aab1..798016f 100644 --- a/docs/reference/set_data_urls.html +++ b/docs/reference/set_data_urls.html @@ -1,5 +1,5 @@ -Update (or add) data table URLs — set_data_urls • EMLeditor +Update (or add) data table URLs — set_data_urls • EMLeditor Skip to contents @@ -108,7 +108,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_datastore_doi.html b/docs/reference/set_datastore_doi.html index 64e77ce..d16bb27 100644 --- a/docs/reference/set_datastore_doi.html +++ b/docs/reference/set_datastore_doi.html @@ -1,5 +1,5 @@ -Initiates a draft reference and inserts the reserved DOI into metadata — set_datastore_doi • EMLeditor +Initiates a draft reference and inserts the reserved DOI into metadata — set_datastore_doi • EMLeditor Skip to contents @@ -108,7 +108,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_doi.html b/docs/reference/set_doi.html index 04af0e0..cff0b9e 100644 --- a/docs/reference/set_doi.html +++ b/docs/reference/set_doi.html @@ -1,5 +1,5 @@ -Check & set a DOI — set_doi • EMLeditorCheck & set a DOI — set_doi • EMLeditor Skip to contents @@ -102,7 +102,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_drr.html b/docs/reference/set_drr.html index d28205b..87304ac 100644 --- a/docs/reference/set_drr.html +++ b/docs/reference/set_drr.html @@ -1,5 +1,5 @@ -adds DRR connection — set_drr • EMLeditor +adds DRR connection — set_drr • EMLeditor Skip to contents @@ -111,7 +111,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_int_rights.html b/docs/reference/set_int_rights.html index a817918..9ef6ca8 100644 --- a/docs/reference/set_int_rights.html +++ b/docs/reference/set_int_rights.html @@ -1,5 +1,5 @@ -Set Intellectual Rights (and License) — set_int_rights • EMLeditor +Set Intellectual Rights (and License) — set_int_rights • EMLeditor Skip to contents @@ -101,7 +101,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_language.html b/docs/reference/set_language.html index 1c7323d..5024b74 100644 --- a/docs/reference/set_language.html +++ b/docs/reference/set_language.html @@ -1,5 +1,5 @@ -Set the human language used for metadata — set_language • EMLeditor +Set the human language used for metadata — set_language • EMLeditor Skip to contents @@ -97,7 +97,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_lit.html b/docs/reference/set_lit.html index 87aa599..186ee63 100644 --- a/docs/reference/set_lit.html +++ b/docs/reference/set_lit.html @@ -1,5 +1,5 @@ -Edit literature cited — set_lit • EMLeditorEdit literature cited — set_lit • EMLeditor Skip to contents @@ -98,7 +98,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_methods.html b/docs/reference/set_methods.html index 7b3b2f4..6470ebe 100644 --- a/docs/reference/set_methods.html +++ b/docs/reference/set_methods.html @@ -1,5 +1,5 @@ -Sets the Methods in metadata — set_methods • EMLeditor +Sets the Methods in metadata — set_methods • EMLeditor Skip to contents @@ -96,7 +96,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_missing_data.html b/docs/reference/set_missing_data.html index bf61673..5e0b87b 100644 --- a/docs/reference/set_missing_data.html +++ b/docs/reference/set_missing_data.html @@ -1,5 +1,5 @@ -Adds a missing value code and definition to EML metadata — set_missing_data • EMLeditor +Adds a missing value code and definition to EML metadata — set_missing_data • EMLeditor Skip to contents @@ -150,7 +150,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_new_creator.html b/docs/reference/set_new_creator.html index 24a7d41..1518722 100644 --- a/docs/reference/set_new_creator.html +++ b/docs/reference/set_new_creator.html @@ -1,5 +1,5 @@ -Adds creators to EML — set_new_creator • EMLeditor +Adds creators to EML — set_new_creator • EMLeditor Skip to contents @@ -126,7 +126,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_producing_units.html b/docs/reference/set_producing_units.html index 91f22b2..90bc029 100644 --- a/docs/reference/set_producing_units.html +++ b/docs/reference/set_producing_units.html @@ -1,5 +1,5 @@ -Sets Producing Units for use in DataStore — set_producing_units • EMLeditor +Sets Producing Units for use in DataStore — set_producing_units • EMLeditor Skip to contents @@ -98,7 +98,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_project.html b/docs/reference/set_project.html index 43e105b..6d11fdf 100644 --- a/docs/reference/set_project.html +++ b/docs/reference/set_project.html @@ -1,5 +1,5 @@ -Adds a reference to a DataStore Project housing the data package — set_project • EMLeditor +Adds a reference to a DataStore Project housing the data package — set_project • EMLeditor Skip to contents @@ -107,7 +107,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_protocol.html b/docs/reference/set_protocol.html index bc9d573..d026834 100644 --- a/docs/reference/set_protocol.html +++ b/docs/reference/set_protocol.html @@ -1,5 +1,5 @@ -Adds a connection to the protocol under which the data were collected — set_protocol • EMLeditorAdds a connection to the protocol under which the data were collected — set_protocol • EMLeditorExamples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_publisher.html b/docs/reference/set_publisher.html index d59f93e..9bd99a9 100644 --- a/docs/reference/set_publisher.html +++ b/docs/reference/set_publisher.html @@ -1,5 +1,5 @@ -Set Publisher — set_publisher • EMLeditor +Set Publisher — set_publisher • EMLeditor Skip to contents @@ -153,7 +153,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/set_title.html b/docs/reference/set_title.html index afb8b0c..2844b99 100644 --- a/docs/reference/set_title.html +++ b/docs/reference/set_title.html @@ -1,5 +1,5 @@ -Edit data package title — set_title • EMLeditor +Edit data package title — set_title • EMLeditor Skip to contents @@ -96,7 +96,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/upload_data_package.html b/docs/reference/upload_data_package.html index 59eb869..154875b 100644 --- a/docs/reference/upload_data_package.html +++ b/docs/reference/upload_data_package.html @@ -1,5 +1,5 @@ -Upload a data package to DataStore — upload_data_package • EMLeditor +Upload a data package to DataStore — upload_data_package • EMLeditor Skip to contents @@ -47,7 +47,7 @@

Upload a data package to DataStore

Usage

- 
upload_data_package(directory = here::here(), force = FALSE, dev = FALSE)
+ 
upload_data_package(directory = here::here(), force = FALSE, dev = FALSE)
@@ -82,7 +82,7 @@

Details

Examples

 if (FALSE) { # \dontrun{
-dir <- here::here("..", "Downloads", "BICY")
+dir <- here::here("..", "Downloads", "BICY")
 upload_data_package(dir)
 } # }
@@ -96,7 +96,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

diff --git a/docs/reference/write_readme.html b/docs/reference/write_readme.html index 9ba28ff..a2f529e 100644 --- a/docs/reference/write_readme.html +++ b/docs/reference/write_readme.html @@ -1,5 +1,5 @@ -Writes a README file — write_readme • EMLeditor +Writes a README file — write_readme • EMLeditor Skip to contents @@ -87,7 +87,7 @@

Examples -

Site built with pkgdown 2.2.0.

+

Site built with pkgdown 2.2.1.

From 55211f510d10f9694cac86b1e49ab5fc10d2f43a Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Mon, 3 Aug 2026 09:13:00 -0600 Subject: [PATCH 06/13] fix quotation marks on install code example --- README.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.Rmd b/README.Rmd index 4a313c0..24e30f8 100644 --- a/README.Rmd +++ b/README.Rmd @@ -47,7 +47,7 @@ To install all the packages in the ``` r pak::pkg_install("doi-nps/NPSdataverse") #alternatively: -remotes::install_github("doi-nps/NPSdataverse"") +remotes::install_github("doi-nps/NPSdataverse") ``` ## Workflow outline From a3b86720342dc387dbd46914c926b9dd11bb7e7f Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Mon, 3 Aug 2026 09:18:54 -0600 Subject: [PATCH 07/13] created from readme.rmd with devtools::build_readme() --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 2c3d317..2f8d2bb 100644 --- a/README.md +++ b/README.md @@ -39,7 +39,7 @@ EMLeditor): ``` r pak::pkg_install("doi-nps/NPSdataverse") #alternatively: -remotes::install_github("doi-nps/NPSdataverse"") +remotes::install_github("doi-nps/NPSdataverse") ``` ## Workflow outline From e04c9aeeda1523d1801323f0680e7ab6a7dadd64 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Mon, 3 Aug 2026 09:24:03 -0600 Subject: [PATCH 08/13] updated via pkgdown::build_site_github_pages --- docs/index.html | 7 ++++--- docs/pkgdown.yml | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/docs/index.html b/docs/index.html index 779862a..fd5c5d6 100644 --- a/docs/index.html +++ b/docs/index.html @@ -76,9 +76,10 @@

Installation and updates# alternatively: remotes::install_github("doi-nps/eMLeditor")

To install all the packages in the NPSdataverse (including EMLeditor):

-
pak::pkg_install("doi-nps/NPSdataverse")
-#alternatively:
-remotes::install_github("doi-nps/NPSdataverse"")
+
+pak::pkg_install("doi-nps/NPSdataverse")
+#alternatively:
+remotes::install_github("doi-nps/NPSdataverse")

Workflow outline diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 8008c9b..f4a8648 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -7,7 +7,7 @@ articles: a03_Template_edits: a03_Template_edits.html a04_Editing_fixing_eml: a04_Editing_fixing_eml.html a05_advanced_functionality: a05_advanced_functionality.html -last_built: 2026-07-30T15:46Z +last_built: 2026-08-03T15:19Z urls: reference: https://doi-nps.github.io/EMLeditor/reference article: https://doi-nps.github.io/EMLeditor/articles From 6ab48ba236c3f408a93bbd6e766f7a277e0ffb2c Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 5 Aug 2026 11:45:04 -0600 Subject: [PATCH 09/13] update to move sf from Suggests to Imports --- DESCRIPTION | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 720647d..ebf8e51 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -43,14 +43,14 @@ Imports: curl, mockr, rlang, - ISOcodes + ISOcodes, + sf Suggests: stargazer, knitr, rmarkdown, testthat (>= 3.0.0), QCkit, - sf, withr Config/testthat/edition: 3 URL: https://github.com/doi-nps/EMLeditor, https://doi-nps.github.io/EMLeditor/ From e67bb7915cc81f3ade597441bfa312809d10016b Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 5 Aug 2026 11:45:21 -0600 Subject: [PATCH 10/13] add info about moving sf from suggests to imports in description file --- NEWS.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/NEWS.md b/NEWS.md index fbe7f2a..59b058c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,8 @@ # EMLeditor v1.2.1 (Development version) + +## 2026-08-05 + * Update DESCRIPTION: move sf from Suggests to Imports. Hopefully fixes issues with `set_content_units` etc. + ## 2026-07-09 * Update `set_datastore_doi()` to include information or download tags in the data table URL by calling `set_data_urls()` * Update `set_doi()` to including information or download tag in the data table URL by calling `set_data_urls()` From 7d731974b77c9c82bee412f4687d954314c1324f Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 5 Aug 2026 11:48:22 -0600 Subject: [PATCH 11/13] update via pkgdown::build_site_github_pages --- docs/pkgdown.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index f4a8648..ef4522a 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -7,7 +7,7 @@ articles: a03_Template_edits: a03_Template_edits.html a04_Editing_fixing_eml: a04_Editing_fixing_eml.html a05_advanced_functionality: a05_advanced_functionality.html -last_built: 2026-08-03T15:19Z +last_built: 2026-08-05T17:44Z urls: reference: https://doi-nps.github.io/EMLeditor/reference article: https://doi-nps.github.io/EMLeditor/articles From c6c9ee73fccc681b9d155c9120ae5d756a7a4f3b Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 5 Aug 2026 12:29:02 -0600 Subject: [PATCH 12/13] updated via devtools::document --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index ebf8e51..65ee1e1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -19,7 +19,6 @@ License: MIT + file LICENSE BugReports: https://github.com/doi-NPS/EMLeditor/issues Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.3 Remotes: doi-NPS/QCkit Imports: @@ -55,3 +54,4 @@ Suggests: Config/testthat/edition: 3 URL: https://github.com/doi-nps/EMLeditor, https://doi-nps.github.io/EMLeditor/ VignetteBuilder: knitr +Config/roxygen2/version: 8.0.0 From f7bdbe22540f2502d77cbded91c6f8c591d2d7c1 Mon Sep 17 00:00:00 2001 From: Rob Baker Date: Wed, 5 Aug 2026 12:29:16 -0600 Subject: [PATCH 13/13] updated with devtools::document --- man/EMLeditor-package.Rd | 1 + 1 file changed, 1 insertion(+) diff --git a/man/EMLeditor-package.Rd b/man/EMLeditor-package.Rd index c8cdbca..0006320 100644 --- a/man/EMLeditor-package.Rd +++ b/man/EMLeditor-package.Rd @@ -22,6 +22,7 @@ Useful links: Authors: \itemize{ + \item Robert Baker \email{robert_baker@nps.gov} (\href{https://orcid.org/0000-0001-7591-5035}{ORCID}) \item Judd Patterson \email{Judd_Patterson@nps.gov} (\href{https://orcid.org/0000-0002-0951-7917}{ORCID}) }