Bumpt to 4.2.8

Author: gnodar01

cellprofiler_core/__init__.py

@@ -1 +1 @@
-__version__ = "4.2.7"
+__version__ = "4.2.8"

cellprofiler_core/__main__.py

@@ -1,55 +0,0 @@
-import os
-import pathlib
-
-import click
-
-import cellprofiler_core.commands
-
-CONTEXT_SETTINGS = dict(auto_envvar_prefix="COMPLEX")
-
-
-class Command(click.MultiCommand):
-    def get_command(self, context, name):
-        try:
-            name = f"cellprofiler_core.commands._{name}_command"
-
-            imported_module = __import__(name, None, None, ["command"])
-        except ImportError:
-            return
-
-        return imported_module.command
-
-    def list_commands(self, context):
-        command_names = []
-
-        commands_pathname = cellprofiler_core.commands.__file__
-
-        commands_directory = pathlib.Path(commands_pathname).parent
-
-        for filename in os.listdir(commands_directory):
-            if filename.endswith("_command.py") and filename.startswith("_"):
-                command_name = filename[1:-11]
-
-                command_names += [command_name]
-
-        command_names.sort()
-
-        return command_names
-
-
-class Environment:
-    def __init__(self):
-        pass
-
-
-pass_environment = click.make_pass_decorator(Environment, ensure=True)
-
-
-@click.command(cls=Command, context_settings=CONTEXT_SETTINGS)
-@pass_environment
-def main(context):
-    pass
-
-
-if __name__ == "__main__":
-    main({})

cellprofiler_core/commands/__init__.py

@@ -12,6 +12,6 @@
 
 project = "CellProfiler-core"
 
-release = "4.2.7"
+release = "4.2.8"
 
 templates_path = ["_templates"]

cellprofiler_core/commands/_pipeline_command.py

@@ -3,6 +3,6 @@ filterwarnings =
     ignore::DeprecationWarning
     ignore::FutureWarning
 minversion =
-    4.2.7
+    4.2.8
 testpaths =
     ./tests/

cellprofiler_core/commands/_worker_command.py

@@ -8,16 +8,14 @@
         "License :: OSI Approved :: MIT License",
         "Programming Language :: Python :: 3",
         "Programming Language :: Python :: 3.8",
+        "Programming Language :: Python :: 3.9",
     ],
     extras_require={
         "dev": [
-            "black==19.10b0",
-            "click>=7.1.2",
-            "pre-commit==2.2.0",
             "sphinx==3.1.2",
             "twine==3.1.1",
         ],
-        "test": ["pytest==5.4.1"],
+        "test": ["pytest~=7.4.1"],
         "wx": ["wxPython==4.1.0"],
     },
     install_requires=[
@@ -29,8 +27,8 @@
         "numpy>=1.18.2",
         "prokaryote==2.4.4",
         "psutil>=5.7.0",
-        "python-bioformats==4.0.7",
-        "python-javabridge==4.0.3",
+        "python-bioformats>=4.0.7,<5",
+        "python-javabridge>=4.0.3,<5",
         "pyzmq~=22.3",
         "scikit-image==0.18.3",
         "scipy>=1.4.1",
@@ -41,6 +39,6 @@
     packages=setuptools.find_packages(exclude=["tests"]),
     python_requires=">=3.8",
     url="https://github.com/CellProfiler/core",
-    version="4.2.7",
+    version="4.2.8",
     zip_safe=False,
 )